1 #! /usr/local/bin/bash -lx
18 function transferJobData {
19 echo "Copying data back"
20 #ssh -i ${HOME}/.ssh/ccin2p3 linux1.dg.creatis.insa-lyon.fr "mkdir cc/$(basename ${OUTPUTDIR})/output.${JOB_ID%%.*}"
21 #rsync -av --remove-source-files -e "ssh -i ${HOME}/.ssh/ccin2p3" output/ "linux1.dg.creatis.insa-lyon.fr:./cc/$(basename ${OUTPUTDIR})/output.${JOB_ID%%.*}"
24 mkdir "${OUTPUTDIR}/output.${JOB_ID%%.*}"
25 rsync -av --remove-source-files output/ "${OUTPUTDIR}/output.${JOB_ID%%.*}"
27 rm -r ${LOCALMACRODIR}
40 test -f ${HOME}/.bashrc && echo "Sourcing bashrc" && source ${HOME}/.bashrc
45 echo "MACRODIR=${MACRODIR:?"unknown MACRODIR"}"
46 echo "MACROFILE=${MACROFILE:?"unknown MACROFILE"}"
47 echo "RELEASEDIR=${RELEASEDIR:?"unknown RELEASEDIR"}"
48 echo "OUTPUTDIR=${OUTPUTDIR:?"unknown OUTPUTDIR"}"
49 echo "JOB_ID=${JOB_ID}"
51 echo "INDEXMAX=${INDEX}"
54 if test "$RELEASEDIR" = "NONE"
56 echo Using $(which Gate)
59 test -d "${RELEASEDIR}" || error "can't find release"
60 md5sum ${RELEASEDIR}/Gate
61 test -f ${RELEASEDIR}/libGate.so && md5sum ${RELEASEDIR}/libGate.so
63 echo "Finding libraries"
64 ROOTLIBS="${RELEASEDIR}/libCore.so:${RELEASEDIR}/libCint.so:${RELEASEDIR}/libRIO.so:${RELEASEDIR}/libNet.so:${RELEASEDIR}/libHist.so:${RELEASEDIR}/libGraf.so:${RELEASEDIR}/libGraf3d.so:${RELEASEDIR}/libGpad.so:${RELEASEDIR}/libTree.so:${RELEASEDIR}/libRint.so:${RELEASEDIR}/libPostscript.so:${RELEASEDIR}/libMatrix.so:${RELEASEDIR}/libPhysics.so:${RELEASEDIR}/libMathCore.so:${RELEASEDIR}/libThread.so:"
65 echo "ROOTLIBS=${ROOTLIBS}"
66 G4LIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libG4*.so'); do echo -n "${library}:"; done)"
67 echo "G4LIBS=${G4LIBS}"
68 CLHEPLIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libCLHEP*.so'); do echo -n "${library}:"; done)"
69 echo "CLHEPLIBS=${CLHEPLIBS}"
71 test -f ${RELEASEDIR}/libGate.so && GATELIBS="${RELEASEDIR}/libGate.so:"
72 echo "GATELIBS=${GATELIBS}"
74 test -d "${MACRODIR}" && test -d "${MACRODIR}/mac" || error "invalid macro"
78 LOCALMACRODIR=$(mktemp -d)
79 trap "wait ; transferJobData ; exit 1" 137 138 152 153
81 cp -r -L "${MACRODIR}"/{data,mac} .
85 ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
89 if test "$RELEASEDIR" = "NONE"
91 Gate ${PARAM} ${MACROFILE} || error "gate failed"
93 LD_PRELOAD="${ROOTLIBS}${G4LIBS}${CLHEPLIBS}${GATELIBS}" \
94 G4LEVELGAMMADATA="${RELEASEDIR}/PhotonEvaporation2.1" \
95 G4RADIOACTIVEDATA="${RELEASEDIR}/RadioactiveDecay3.3" \
96 G4LEDATA="${RELEASEDIR}/G4EMLOW6.19" \
97 G4NEUTRONHPDATA="${RELEASEDIR}/G4NDL3.14" \
98 G4ABLADATA="${RELEASEDIR}/G4ABLA3.0" \
99 G4REALSURFACEDATA="${RELEASEDIR}/RealSurface1.0" \
100 G4NEUTRONXSDATA="${RELEASEDIR}/G4NEUTRONXS1.0" \
101 G4PIIDATA="${RELEASEDIR}/G4PII1.2" \
102 /usr/bin/time --format="real %es\nuser %Us\nsys %Ss\nmaxmem %Mk" \
103 ${RELEASEDIR}/Gate ${PARAM} ${MACROFILE} \
104 || error "gate failed"