1 #! /usr/local/bin/bash -lx
18 function transferJobData {
19 echo "Copying data back"
22 mkdir "${OUTPUTDIR}/output.${JOB_ID%%.*}"
23 rsync -av --remove-source-files output/ "${OUTPUTDIR}/output.${JOB_ID%%.*}"
25 rm -r ${LOCALMACRODIR}
38 test -f ${HOME}/.bashrc && echo "Sourcing bashrc" && source ${HOME}/.bashrc
43 echo "MACRODIR=${MACRODIR:?"unknown MACRODIR"}"
44 echo "MACROFILE=${MACROFILE:?"unknown MACROFILE"}"
45 echo "RELEASEDIR=${RELEASEDIR:?"unknown RELEASEDIR"}"
46 echo "OUTPUTDIR=${OUTPUTDIR:?"unknown OUTPUTDIR"}"
47 echo "JOB_ID=${JOB_ID}"
49 echo "INDEXMAX=${INDEX}"
52 if test "$RELEASEDIR" = "NONE"
54 echo Using $(which Gate)
57 test -d "${RELEASEDIR}" || error "can't find release"
58 md5sum ${RELEASEDIR}/Gate
59 test -f ${RELEASEDIR}/libGate.so && md5sum ${RELEASEDIR}/libGate.so
61 echo "Finding libraries"
62 ROOTLIBS="${RELEASEDIR}/libCore.so:${RELEASEDIR}/libCint.so:${RELEASEDIR}/libRIO.so:${RELEASEDIR}/libNet.so:${RELEASEDIR}/libHist.so:${RELEASEDIR}/libGraf.so:${RELEASEDIR}/libGraf3d.so:${RELEASEDIR}/libGpad.so:${RELEASEDIR}/libTree.so:${RELEASEDIR}/libRint.so:${RELEASEDIR}/libPostscript.so:${RELEASEDIR}/libMatrix.so:${RELEASEDIR}/libPhysics.so:${RELEASEDIR}/libMathCore.so:${RELEASEDIR}/libThread.so:"
63 echo "ROOTLIBS=${ROOTLIBS}"
64 G4LIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libG4*.so'); do echo -n "${library}:"; done)"
65 echo "G4LIBS=${G4LIBS}"
66 CLHEPLIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libCLHEP*.so'); do echo -n "${library}:"; done)"
67 echo "CLHEPLIBS=${CLHEPLIBS}"
69 test -f ${RELEASEDIR}/libGate.so && GATELIBS="${RELEASEDIR}/libGate.so:"
70 echo "GATELIBS=${GATELIBS}"
72 test -d "${MACRODIR}" && test -d "${MACRODIR}/mac" || error "invalid macro"
76 LOCALMACRODIR=$(mktemp -d)
77 trap "wait ; transferJobData ; exit 1" 1 2 3 15
79 cp -r -L "${MACRODIR}"/{data,mac} .
83 ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
87 if test "$RELEASEDIR" = "NONE"
89 Gate ${PARAM} ${MACROFILE} || error "gate failed"
91 LD_PRELOAD="${ROOTLIBS}${G4LIBS}${CLHEPLIBS}${GATELIBS}" \
92 G4LEVELGAMMADATA="${RELEASEDIR}/PhotonEvaporation2.1" \
93 G4RADIOACTIVEDATA="${RELEASEDIR}/RadioactiveDecay3.3" \
94 G4LEDATA="${RELEASEDIR}/G4EMLOW6.19" \
95 G4NEUTRONHPDATA="${RELEASEDIR}/G4NDL3.14" \
96 G4ABLADATA="${RELEASEDIR}/G4ABLA3.0" \
97 G4REALSURFACEDATA="${RELEASEDIR}/RealSurface1.0" \
98 G4NEUTRONXSDATA="${RELEASEDIR}/G4NEUTRONXS1.0" \
99 G4PIIDATA="${RELEASEDIR}/G4PII1.2" \
100 /usr/bin/time --format="real %es\nuser %Us\nsys %Ss\nmaxmem %Mk" \
101 ${RELEASEDIR}/Gate ${PARAM} ${MACROFILE} \
102 || error "gate failed"