1 #! /usr/local/bin/bash -lx
18 function transferJobData {
19 echo "Copying data back"
22 mkdir "${OUTPUTDIR}/output.${JOB_ID%%.*}"
23 rsync -av --remove-source-files output/ "${OUTPUTDIR}/output.${JOB_ID%%.*}"
25 unlink "${LOCALMACRODIR}"/data
26 rm -r ${LOCALMACRODIR}
39 test -f ${HOME}/.bashrc && echo "Sourcing bashrc" && source ${HOME}/.bashrc
44 echo "MACRODIR=${MACRODIR:?"unknown MACRODIR"}"
45 echo "MACROFILE=${MACROFILE:?"unknown MACROFILE"}"
46 echo "RELEASEDIR=${RELEASEDIR:?"unknown RELEASEDIR"}"
47 echo "OUTPUTDIR=${OUTPUTDIR:?"unknown OUTPUTDIR"}"
48 echo "JOB_ID=${JOB_ID}"
50 echo "INDEXMAX=${INDEX}"
53 if test "$RELEASEDIR" = "NONE"
55 echo Using $(which Gate)
58 test -d "${RELEASEDIR}" || error "can't find release"
59 md5sum ${RELEASEDIR}/Gate
60 test -f ${RELEASEDIR}/libGate.so && md5sum ${RELEASEDIR}/libGate.so
62 echo "Finding libraries"
63 ROOTLIBS="${RELEASEDIR}/libCore.so:${RELEASEDIR}/libCint.so:${RELEASEDIR}/libRIO.so:${RELEASEDIR}/libNet.so:${RELEASEDIR}/libHist.so:${RELEASEDIR}/libGraf.so:${RELEASEDIR}/libGraf3d.so:${RELEASEDIR}/libGpad.so:${RELEASEDIR}/libTree.so:${RELEASEDIR}/libRint.so:${RELEASEDIR}/libPostscript.so:${RELEASEDIR}/libMatrix.so:${RELEASEDIR}/libPhysics.so:${RELEASEDIR}/libMathCore.so:${RELEASEDIR}/libThread.so:"
64 echo "ROOTLIBS=${ROOTLIBS}"
65 G4LIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libG4*.so'); do echo -n "${library}:"; done)"
66 echo "G4LIBS=${G4LIBS}"
67 CLHEPLIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libCLHEP*.so'); do echo -n "${library}:"; done)"
68 echo "CLHEPLIBS=${CLHEPLIBS}"
70 test -f ${RELEASEDIR}/libGate.so && GATELIBS="${RELEASEDIR}/libGate.so:"
71 echo "GATELIBS=${GATELIBS}"
73 test -d "${MACRODIR}" && test -d "${MACRODIR}/mac" || error "invalid macro"
77 LOCALMACRODIR=$(mktemp -d)
78 trap "wait ; transferJobData ; exit 1" 1 2 3 15
80 cp -r -L "${MACRODIR}"/mac .
81 ln -s "${MACRODIR}"/data ./data
82 #cp -r -L "${MACRODIR}"/{data,mac} .
86 ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
90 if test "$RELEASEDIR" = "NONE"
92 Gate ${PARAM} ${MACROFILE} || error "gate failed"
94 LD_PRELOAD="${ROOTLIBS}${G4LIBS}${CLHEPLIBS}${GATELIBS}" \
95 G4LEVELGAMMADATA="${RELEASEDIR}/PhotonEvaporation2.1" \
96 G4RADIOACTIVEDATA="${RELEASEDIR}/RadioactiveDecay3.3" \
97 G4LEDATA="${RELEASEDIR}/G4EMLOW6.19" \
98 G4NEUTRONHPDATA="${RELEASEDIR}/G4NDL3.14" \
99 G4ABLADATA="${RELEASEDIR}/G4ABLA3.0" \
100 G4REALSURFACEDATA="${RELEASEDIR}/RealSurface1.0" \
101 G4NEUTRONXSDATA="${RELEASEDIR}/G4NEUTRONXS1.0" \
102 G4PIIDATA="${RELEASEDIR}/G4PII1.2" \
103 /usr/bin/time --format="real %es\nuser %Us\nsys %Ss\nmaxmem %Mk" \
104 ${RELEASEDIR}/Gate ${PARAM} ${MACROFILE} \
105 || error "gate failed"