13 #PBS -l walltime=100:00:00
30 test -f ${HOME}/.bashrc && echo "Sourcing bashrc" && source ${HOME}/.bashrc
35 echo "MACRODIR=${MACRODIR:?"unknown MACRODIR"}"
36 echo "MACROFILE=${MACROFILE:?"unknown MACROFILE"}"
37 echo "RELEASEDIR=${RELEASEDIR:?"unknown RELEASEDIR"}"
38 echo "OUTPUTDIR=${OUTPUTDIR:?"unknown OUTPUTDIR"}"
39 echo "SCRIPTDIR=${SCRIPTDIR:?"unknown SCRIPTDIR"}"
40 echo "PBS_JOBID=${PBS_JOBID}"
42 echo "INDEXMAX=${INDEX}"
44 test -d "${RELEASEDIR}" || error "can't find release"
45 test -d "${MACRODIR}" && test -d "${MACRODIR}/mac" || error "invalid macro"
46 md5sum ${RELEASEDIR}/Gate
47 test -f ${RELEASEDIR}/libGate.so && md5sum ${RELEASEDIR}/libGate.so
49 echo "Finding libraries"
50 ROOTLIBS="${RELEASEDIR}/libCore.so:${RELEASEDIR}/libCint.so:${RELEASEDIR}/libRIO.so:${RELEASEDIR}/libNet.so:${RELEASEDIR}/libHist.so:${RELEASEDIR}/libGraf.so:${RELEASEDIR}/libGraf3d.so:${RELEASEDIR}/libGpad.so:${RELEASEDIR}/libTree.so:${RELEASEDIR}/libRint.so:${RELEASEDIR}/libPostscript.so:${RELEASEDIR}/libMatrix.so:${RELEASEDIR}/libPhysics.so:${RELEASEDIR}/libMathCore.so:${RELEASEDIR}/libThread.so:"
51 echo "ROOTLIBS=${ROOTLIBS}"
52 G4LIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libG4*.so'); do echo -n "${library}:"; done)"
53 echo "G4LIBS=${G4LIBS}"
54 CLHEPLIBS="$(for library in $(find "${RELEASEDIR}" -maxdepth 1 -name 'libCLHEP*.so'); do echo -n "${library}:"; done)"
55 echo "CLHEPLIBS=${CLHEPLIBS}"
57 test -f ${RELEASEDIR}/libGate.so && GATELIBS="${RELEASEDIR}/libGate.so:"
58 echo "GATELIBS=${GATELIBS}"
62 LOCALMACRODIR=$(mktemp -d)
64 cp -r -L "${MACRODIR}"/{data,mac} .
67 #echo "Search for param generation script"
68 #if [ -x "${MACRODIR}/generate_placements.py" -a ! -z "${PARAM}" ]; then
69 # echo "found generate_placements.py and non null param"
70 # cp "${MACRODIR}/generate_placements.py" .
71 # ./generate_placements.py ${PARAM}
76 LD_PRELOAD="${ROOTLIBS}${G4LIBS}${CLHEPLIBS}${GATELIBS}" \
77 G4LEVELGAMMADATA="${RELEASEDIR}/PhotonEvaporation2.1" \
78 G4RADIOACTIVEDATA="${RELEASEDIR}/RadioactiveDecay3.3" \
79 G4LEDATA="${RELEASEDIR}/G4EMLOW6.19" \
80 G4NEUTRONHPDATA="${RELEASEDIR}/G4NDL3.14" \
81 G4ABLADATA="${RELEASEDIR}/G4ABLA3.0" \
82 G4REALSURFACEDATA="${RELEASEDIR}/RealSurface1.0" \
83 G4NEUTRONXSDATA="${RELEASEDIR}/G4NEUTRONXS1.0" \
84 G4PIIDATA="${RELEASEDIR}/G4PII1.2" \
85 /usr/bin/time --format="real %es\nuser %Us\nsys %Ss\nmaxmem %Mk" \
86 ${RELEASEDIR}/Gate ${PARAM} ${MACROFILE} \
87 || error "gate failed"
89 #echo "Convert to energy"
90 #${SCRIPTDIR}/phsptoenergy.py output/phspTarget.root output/energyTarget.mat || warning "convertion failed"
92 if test $(find output -name '*-detected.root' | wc -l) -ne 0
94 echo "Parsing detected particle"
95 ${SCRIPTDIR}/phspdetected.py output || warning "detection failed"
98 echo "Copying data back"
99 mv output "${OUTPUTDIR}/output.${PBS_JOBID%%.*}"
102 rm -r ${LOCALMACRODIR}