1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
3 Main authors : XX XX XX
6 - University of LYON http://www.universite-lyon.fr/
7 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
8 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
10 This software is distributed WITHOUT ANY WARRANTY; without even
11 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12 PURPOSE. See the copyright notices for more information.
14 It is distributed under dual licence
15 - BSD http://www.opensource.org/licenses/bsd-license.php
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
18 =========================================================================*/
20 #include "clitkDicomRT_ROI.h"
21 #include <vtkSmartPointer.h>
22 #include <vtkAppendPolyData.h>
24 //--------------------------------------------------------------------
25 clitk::DicomRT_ROI::DicomRT_ROI()
30 mColor[0] = mColor[1] = mColor[2] = 0;
31 mMeshIsUpToDate = false;
33 //--------------------------------------------------------------------
36 //--------------------------------------------------------------------
37 clitk::DicomRT_ROI::~DicomRT_ROI()
41 //--------------------------------------------------------------------
44 //--------------------------------------------------------------------
45 void clitk::DicomRT_ROI::SetDisplayColor(double r, double v, double b)
52 //--------------------------------------------------------------------
55 //--------------------------------------------------------------------
56 int clitk::DicomRT_ROI::GetROINumber() const
60 //--------------------------------------------------------------------
63 //--------------------------------------------------------------------
64 const std::string & clitk::DicomRT_ROI::GetName() const
68 //--------------------------------------------------------------------
71 //--------------------------------------------------------------------
72 const std::vector<double> & clitk::DicomRT_ROI::GetDisplayColor() const
76 //--------------------------------------------------------------------
79 //--------------------------------------------------------------------
80 void clitk::DicomRT_ROI::Print(std::ostream & os) const
82 os << "ROI " << mNumber << "\t" << mName
83 << "\t(" << mColor[0] << " " << mColor[1] << " " << mColor[2] << ")"
84 << "\t Contours = " << mListOfContours.size() << std::endl;
86 //--------------------------------------------------------------------
89 //--------------------------------------------------------------------
90 void clitk::DicomRT_ROI::SetBackgroundValueLabelImage(double bg)
92 mBackgroundValue = bg;
94 //--------------------------------------------------------------------
97 //--------------------------------------------------------------------
98 double clitk::DicomRT_ROI::GetBackgroundValueLabelImage() const
100 return mBackgroundValue;
102 //--------------------------------------------------------------------
105 //--------------------------------------------------------------------
106 void clitk::DicomRT_ROI::Read(std::map<int, std::string> & rois, gdcm::SQItem * item)
109 // Change number if needed
113 // ROI number [Referenced ROI Number]
114 mNumber = atoi(item->GetEntryValue(0x3006,0x0084).c_str());
117 mName = rois[mNumber];
119 // ROI Color [ROI Display Color]
120 mColor = clitk::parse_string<double>(item->GetEntryValue(0x3006,0x002a),'\\');
122 // Read contours [Contour Sequence]
123 gdcm::SeqEntry * contours=item->GetSeqEntry(0x3006,0x0040);
124 for(gdcm::SQItem* j=contours->GetFirstSQItem(); j!=0; j=contours->GetNextSQItem()) {
125 DicomRT_Contour * c = new DicomRT_Contour;
127 if (b) mListOfContours.push_back(c);
130 //--------------------------------------------------------------------
133 //--------------------------------------------------------------------
134 vtkPolyData * clitk::DicomRT_ROI::GetMesh()
136 if (!mMeshIsUpToDate) {
141 //--------------------------------------------------------------------
144 //--------------------------------------------------------------------
145 void clitk::DicomRT_ROI::ComputeMesh()
147 vtkAppendPolyData * append = vtkAppendPolyData::New();
148 for(unsigned int i=0; i<mListOfContours.size(); i++) {
149 append->AddInput(mListOfContours[i]->GetMesh());
152 mMesh = append->GetOutput();
153 mMeshIsUpToDate = true;
155 //--------------------------------------------------------------------
158 //--------------------------------------------------------------------
159 void clitk::DicomRT_ROI::SetFromBinaryImage(vvImage::Pointer image, int n,
161 std::vector<double> color)
164 // ROI number [Referenced ROI Number]
170 // ROI Color [ROI Display Color]
173 // No contours [Contour Sequence]
174 mListOfContours.clear();
179 //--------------------------------------------------------------------
182 //--------------------------------------------------------------------
183 const vvImage::Pointer clitk::DicomRT_ROI::GetImage() const
187 //--------------------------------------------------------------------