1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
18 #ifndef CLITKIMAGECOMMON_H
19 #define CLITKIMAGECOMMON_H
22 //#include "clitkCommon.h"
26 #include "itkImageFileReader.h"
27 #include "itkImageSeriesReader.h"
28 #include "itkImageFileWriter.h"
32 //--------------------------------------------------------------------
33 // New Image creation (no allocation)
34 template<class PixelType>
35 typename itk::Image<PixelType,1>::Pointer NewImage1D(int size, double spacing=1.0);
36 template<class PixelType>
37 typename itk::Image<PixelType,2>::Pointer NewImage2D(int sx, int sy, double dx=1.0, double dy=1.0);
38 template<class PixelType>
39 typename itk::Image<PixelType,3>::Pointer NewImage3D(int sx, int sy, int sz, double dx=1.0, double dy=1.0, double dz=1.0);
40 template<class PixelType>
41 typename itk::Image<PixelType,4>::Pointer NewImage4D(int sx, int sy, int sz, int st, double dx=1.0, double dy=1.0, double dz=1.0, double dt=1.0);
43 template<class ImageType>
44 typename ImageType::Pointer NewImageLike(const typename ImageType::Pointer input, bool allocate=true);
46 template<class ImageType>
47 void CopyValues(const typename ImageType::Pointer input, typename ImageType::Pointer output);
48 //--------------------------------------------------------------------
49 // New Image creation (with allocation)
51 //--------------------------------------------------------------------
52 // Read an Write image
53 // template<class ImageType>
54 // typename ImageType::Pointer ReadImage(const std::string & filename, const bool verbose=false);
55 template<typename ImageType>
56 typename ImageType::Pointer readImage(const std::string & filename, const bool verbose=false);
57 template<typename ImageType>
58 typename ImageType::Pointer readImage(const std::vector<std::string> & filenames, const bool verbose=false);
59 template<class ImageType>
60 void writeImage(const typename ImageType::Pointer image, const std::string & filename, const bool verbose=false);
61 // template<class ImageType>
62 // void writeConstImage(const typename ImageType::ConstPointer image, const std::string & filename, const bool verbose=false);
63 template<class ImageType>
64 void writeImage(const ImageType* image, const std::string & filename, const bool verbose=false);
66 //--------------------------------------------------------------------
67 // Read/print image header
68 itk::ImageIOBase::Pointer readImageHeader(const std::string & filename,bool exit_on_error=true);
69 void printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level=0);
71 //--------------------------------------------------------------------
72 // Determine pixetype and dimension of an image file
73 void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType);
75 //--------------------------------------------------------------------
76 // Determine pixetype, dimension and number of pixel components of an image file
77 void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType, int & components);
79 //--------------------------------------------------------------------
80 template<class ImageType>
81 int ComputeHowManyDifferentIntensity(const typename ImageType::Pointer & image,
82 std::vector<typename ImageType::PixelType> & listOfIntensities);
83 template<class InputImageType, class MaskImageType>
84 void ComputeWeightsOfEachClasses(const typename InputImageType::Pointer & input,
85 const typename MaskImageType::Pointer & mask,
86 const std::vector<typename MaskImageType::PixelType> & listOfIntensities,
87 std::map<typename MaskImageType::PixelType,
88 std::map<typename InputImageType::PixelType, double> > & mapOfLabelsAndWeights);
90 //--------------------------------------------------------------------
91 template<class ImageType1, class ImageType2>
92 bool HaveSameSizeAndSpacing(typename ImageType1::ConstPointer A,
93 typename ImageType2::ConstPointer B);
95 template<class ImageType1, class ImageType2>
96 bool HaveSameSizeAndSpacing(typename ImageType1::Pointer A,
97 typename ImageType2::Pointer B);
99 //--------------------------------------------------------------------
100 template<class ImageType1, class ImageType2>
101 bool HaveSameSpacing(typename ImageType1::ConstPointer A,
102 typename ImageType2::ConstPointer B);
104 template<class ImageType1, class ImageType2>
105 bool HaveSameSpacing(typename ImageType1::Pointer A,
106 typename ImageType2::Pointer B);
108 #include "clitkImageCommon.txx"
112 #endif /* end #define CLITKIMAGECOMMON_H */