1 #ifndef CLITKIMAGECOMMON_H
2 #define CLITKIMAGECOMMON_H
5 -------------------------------------------------------------------
6 * @file clitkImageCommon.h
7 * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
8 * @date 07 Sep 2007 11:30:10
12 -------------------------------------------------------------------*/
15 #include "clitkCommon.h"
19 #include "itkImageFileReader.h"
20 #include "itkImageSeriesReader.h"
21 #include "itkImageFileWriter.h"
23 #include "gdcmFileHelper.h"
28 //--------------------------------------------------------------------
29 // New Image creation (no allocation)
30 template<class PixelType>
31 typename itk::Image<PixelType,1>::Pointer NewImage1D(int size, double spacing=1.0);
32 template<class PixelType>
33 typename itk::Image<PixelType,2>::Pointer NewImage2D(int sx, int sy, double dx=1.0, double dy=1.0);
34 template<class PixelType>
35 typename itk::Image<PixelType,3>::Pointer NewImage3D(int sx, int sy, int sz, double dx=1.0, double dy=1.0, double dz=1.0);
36 template<class PixelType>
37 typename itk::Image<PixelType,4>::Pointer NewImage4D(int sx, int sy, int sz, int st, double dx=1.0, double dy=1.0, double dz=1.0, double dt=1.0);
39 //--------------------------------------------------------------------
40 // New Image creation (with allocation)
42 //--------------------------------------------------------------------
43 // Read an Write image
44 // template<class ImageType>
45 // typename ImageType::Pointer ReadImage(const std::string & filename, const bool verbose=false);
46 template<typename ImageType>
47 typename ImageType::Pointer readImage(const std::string & filename, const bool verbose=false);
48 template<typename ImageType>
49 typename ImageType::Pointer readImage(const std::vector<std::string> & filenames, const bool verbose=false);
50 template<class ImageType>
51 void writeImage(const typename ImageType::Pointer image, const std::string & filename, const bool verbose=false);
52 // template<class ImageType>
53 // void writeConstImage(const typename ImageType::ConstPointer image, const std::string & filename, const bool verbose=false);
54 template<class ImageType>
55 void writeImage(const ImageType* image, const std::string & filename, const bool verbose=false);
57 //--------------------------------------------------------------------
58 // Read/print image header
59 itk::ImageIOBase::Pointer readImageHeader(const std::string & filename);
60 void printImageHeader(itk::ImageIOBase::Pointer header, std::ostream & os, const int level=0);
62 //--------------------------------------------------------------------
63 // Determine pixetype and dimension of an image file
64 void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType);
66 //--------------------------------------------------------------------
67 // Determine pixetype, dimension and number of pixel components of an image file
68 void ReadImageDimensionAndPixelType(const std::string & filename, int & dimension, std::string & pixeType, int & components);
70 //--------------------------------------------------------------------
71 // Read a dicom header
72 gdcm::File * readDicomHeader(const std::string & filename, const bool verbose=false);
74 //--------------------------------------------------------------------
75 template<class ImageType>
76 int ComputeHowManyDifferentIntensity(const typename ImageType::Pointer & image,
77 std::vector<typename ImageType::PixelType> & listOfIntensities);
78 template<class InputImageType, class MaskImageType>
79 void ComputeWeightsOfEachClasses(const typename InputImageType::Pointer & input,
80 const typename MaskImageType::Pointer & mask,
81 const std::vector<typename MaskImageType::PixelType> & listOfIntensities,
82 std::map<typename MaskImageType::PixelType,
83 std::map<typename InputImageType::PixelType, double> > & mapOfLabelsAndWeights);
85 #include "clitkImageCommon.txx"
89 #endif /* end #define CLITKIMAGECOMMON_H */