common/vvToITK.h

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17   ======================================================================-====*/
  18
  19 #ifndef VVIMAGETOITK_H
  20 #define VVIMAGETOITK_H
  21
  22 // std
  23 #include <vector>
  24
  25 // vv
  26 #include "vvImage.h"
  27
  28 // itk
  29 #include <itkImage.h>
  30 #include <itkJoinSeriesImageFilter.h>
  31 #include "itkVTKImageToImageFilter.h"
  32
  33 //--------------------------------------------------------------------
  34 ///Converts the vv image to itk, handling the 4D problem
  35 template<unsigned int Dim, class PixelType> std::vector<typename itk::Image<PixelType,Dim>::ConstPointer> vvImageToITKImageVector(vvImage::Pointer vv_image) ///Converts the vv image to itk, handling the 4D problem
  36 {
  37   assert(Dim < 5 && Dim > 1); // We don't handle anything higher than 4-dimensional (for the moment :-p)
  38   assert(vv_image->GetVTKImages().size() > 0); //we assume there is something to convert
  39   typedef itk::Image< PixelType, Dim > OutputImageType;
  40   std::vector<typename itk::Image<PixelType,Dim>::ConstPointer> result;
  41
  42   typedef itk::Image< PixelType, Dim >    ConnectorImageType;
  43   typedef itk::VTKImageToImageFilter<ConnectorImageType> ConnectorType;
  44   for (unsigned int i = 0; i < vv_image->GetVTKImages().size(); i++)
  45     {
  46       typename ConnectorType::Pointer connector = ConnectorType::New();
  47       connector->SetInput(vv_image->GetVTKImages()[i]);
  48       connector->Update();
  49       result.push_back(connector->GetOutput());
  50     }
  51   return result;
  52 }
  53 //--------------------------------------------------------------------
  54
  55
  56 //--------------------------------------------------------------------
  57 ///Converts the vv image to itk, handling the 4D problem
  58 template<class ImageType> typename ImageType::ConstPointer vvImageToITK(vvImage::Pointer vv_image) ///Converts the vv image to itk, handling the 4D problem
  59 {
  60   const unsigned int Dim=ImageType::ImageDimension;
  61   assert(Dim < 5 && Dim > 0); // We don't handle anything higher than 4-dimensional (for the moment :-p)
  62   typedef ImageType OutputImageType;
  63
  64   if (Dim==4)
  65     {
  66       typedef itk::Image< typename ImageType::PixelType,  3 >    ConnectorImageType;
  67       typedef itk::VTKImageToImageFilter<ConnectorImageType> ConnectorType;
  68       typedef itk::JoinSeriesImageFilter<ConnectorImageType,OutputImageType> FilterType;
  69
  70
  71       typename FilterType::Pointer filter = FilterType::New();
  72       filter->SetOrigin(vv_image->GetOrigin()[3]);
  73       filter->SetSpacing(vv_image->GetSpacing()[3]);
  74
  75       for (int i = 0; i < vv_image->GetSize()[3]; i++)
  76         {
  77           typename ConnectorType::Pointer connector = ConnectorType::New();
  78           connector->SetInput(vv_image->GetVTKImages()[i]);
  79           connector->Update();
  80           filter->PushBackInput(connector->GetOutput());
  81         }
  82       filter->Update();
  83       return filter->GetOutput();
  84     }
  85   else //Dim == 1,2,3
  86     {
  87       assert(!vv_image->IsTimeSequence()); //This case isn't implemented
  88       typedef ImageType  ConnectorImageType;
  89       typedef itk::VTKImageToImageFilter <ConnectorImageType> ConnectorType;
  90       typename ConnectorType::Pointer connector = ConnectorType::New();
  91       connector->SetInput(vv_image->GetVTKImages()[0]);
  92       connector->Update();
  93       return connector->GetOutput();
  94     }
  95 }
  96 //--------------------------------------------------------------------
  97
  98
  99 //--------------------------------------------------------------------
 100 ///Converts a single time frame of a vv image to itk.
 101 template<unsigned int Dim, class PixelType> typename itk::Image<PixelType,Dim>::ConstPointer vvSingleFrameToITK(vvImage::Pointer vv_image,int frame) ///Converts the vv image to itk, handling the 4D problem
 102 {
 103   assert(Dim < 4 && Dim > 0);
 104   typedef itk::Image< PixelType, Dim > OutputImageType;
 105   typedef itk::Image< PixelType,  Dim >    ConnectorImageType;
 106   typedef itk::VTKImageToImageFilter <ConnectorImageType> ConnectorType;
 107   typename ConnectorType::Pointer connector = ConnectorType::New();
 108   connector->SetInput(vv_image->GetVTKImages()[frame]);
 109   connector->Update();
 110   return connector->GetOutput();
 111 }
 112 //--------------------------------------------------------------------
 113
 114
 115 //--------------------------------------------------------------------
 116 template<unsigned int Dim, class PixelType>
 117 typename itk::Image<PixelType,Dim>::ConstPointer
 118 ItkImageFromVtk(vtkImageData * input)
 119 {
 120   typedef itk::Image< PixelType, Dim > OutputImageType;
 121   typedef itk::Image< PixelType,  Dim >    ConnectorImageType;
 122   typedef itk::VTKImageToImageFilter <ConnectorImageType> ConnectorType;
 123   typename ConnectorType::Pointer connector = ConnectorType::New();
 124   connector->SetInput(input);
 125   connector->Update();
 126   return connector->GetOutput();
 127 }
 128 //--------------------------------------------------------------------
 129
 130
 131
 132 #endif