1 /*=========================================================================
3 Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
4 l'Image). All rights reserved. See Doc/License.txt or
5 http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
7 This software is distributed WITHOUT ANY WARRANTY; without even
8 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
9 PURPOSE. See the above copyright notices for more information.
11 =========================================================================*/
14 -------------------------------------------------------------------
15 * @file clitkGuerreroVentilationGenericFilter.cxx
16 * @author Joël Schaerer
20 -------------------------------------------------------------------*/
24 #include "clitkGuerreroVentilationGenericFilter.h"
25 #include <itkBinaryGuerreroFilter.h>
26 #include <itkImageDuplicator.h>
27 #include <itkExtractImageFilter.h>
29 //--------------------------------------------------------------------
30 clitk::GuerreroVentilationGenericFilter::GuerreroVentilationGenericFilter()
31 :ImageToImageGenericFilter<Self>("GuerreroVentilationGenericFilter") {
33 InitializeImageType<2>();
34 InitializeImageType<3>();
36 //--------------------------------------------------------------------
38 //--------------------------------------------------------------------
39 template<unsigned int Dim>
40 void clitk::GuerreroVentilationGenericFilter::InitializeImageType() {
41 ADD_IMAGE_TYPE(Dim, short);
43 //--------------------------------------------------------------------
46 //--------------------------------------------------------------------
47 template<class ImageType>
48 void clitk::GuerreroVentilationGenericFilter::UpdateWithInputImageType() {
51 assert(mInputFilenames.size() == 2);
54 typedef ImageType InputImageType;
55 typename InputImageType::Pointer input = this->template GetInput<InputImageType>(0);
56 typename InputImageType::Pointer ref = this->template GetInput<InputImageType>(1);
58 typedef itk::Image<float,InputImageType::ImageDimension> OutputImageType;
59 // typename ImageType::Pointer input = clitk::readImage<ImageType>(mInputFilenames[0], mIOVerbose);
60 //typename ImageType::Pointer ref = clitk::readImage<ImageType>(mInputFilenames[1], mIOVerbose);
62 typedef itk::BinaryGuerreroFilter<ImageType,ImageType,OutputImageType> GFilterType;
63 typename GFilterType::Pointer filter = GFilterType::New();
64 filter->SetInput1(ref);
65 filter->SetInput2(input);
66 filter->SetBloodCorrectionFactor(blood_mass_factor);
67 filter->SetUseCorrectFormula(use_correct_formula);
70 this->SetNextOutput<OutputImageType>(filter->GetOutput());
71 //clitk::writeImage<OutputImageType>(filter->GetOutput(), mOutputFilename, mIOVerbose);
72 //std::cout << "Warning: removed " << filter->GetFunctor().aberant_voxels << " aberant voxels from the ventilation image"