itk/clitkDecomposeAndReconstructImageFilter.h

   1 #ifndef clitkDecomposeAndReconstructImageFilter_h
   2 #define clitkDecomposeAndReconstructImageFilter_h
   3
   4 /* =================================================
   5  * @file   clitkDecomposeAndReconstructImageFilter.h
   6  * @author
   7  * @date
   8  *
   9  * @brief
  10  *
  11  ===================================================*/
  12
  13
  14 // clitk include
  15 #include "clitkIO.h"
  16 #include "clitkCommon.h"
  17 #include "clitkDecomposeThroughErosionImageFilter.h"
  18 #include "clitkReconstructThroughDilationImageFilter.h"
  19
  20 //itk include
  21 #include "itkImageToImageFilter.h"
  22 #include "itkRelabelComponentImageFilter.h"
  23
  24
  25 namespace clitk
  26 {
  27
  28   template <class InputImageType, class OutputImageType>
  29   class ITK_EXPORT DecomposeAndReconstructImageFilter :
  30     public itk::ImageToImageFilter<InputImageType, OutputImageType>
  31   {
  32   public:
  33     //----------------------------------------
  34     // ITK
  35     //----------------------------------------
  36     typedef DecomposeAndReconstructImageFilter                                                 Self;
  37     typedef itk::ImageToImageFilter<InputImageType, OutputImageType>  Superclass;
  38     typedef itk::SmartPointer<Self>                                   Pointer;
  39     typedef itk::SmartPointer<const Self>                             ConstPointer;
  40
  41     // Method for creation through the object factory
  42     itkNewMacro(Self);
  43
  44     // Run-time type information (and related methods)
  45     itkTypeMacro( DecomposeAndReconstructImageFilter, ImageToImageFilter );
  46
  47     /** Dimension of the domain space. */
  48     itkStaticConstMacro(InputImageDimension, unsigned int, Superclass::InputImageDimension);
  49     itkStaticConstMacro(OutputImageDimension, unsigned int, Superclass::OutputImageDimension);
  50
  51     //----------------------------------------
  52     // Typedefs
  53     //----------------------------------------
  54     typedef typename OutputImageType::RegionType OutputImageRegionType;
  55     typedef int InternalPixelType;
  56     typedef typename InputImageType::PixelType InputPixelType;
  57     typedef typename OutputImageType::PixelType OutputPixelType;
  58     typedef typename InputImageType::SizeType SizeType;
  59
  60
  61     //----------------------------------------
  62     // Set & Get
  63     //----------------------------------------
  64     itkBooleanMacro(Verbose);
  65     itkSetMacro( Verbose, bool);
  66     itkGetConstReferenceMacro( Verbose, bool);
  67     itkBooleanMacro(FullyConnected);
  68     itkSetMacro( FullyConnected, bool);
  69     itkGetConstReferenceMacro( FullyConnected, bool);
  70     void SetRadius ( const SizeType& s){ m_Radius=s; this->Modified();}
  71     SizeType GetRadius(void){return m_Radius;}
  72     itkSetMacro( MaximumNumberOfLabels, unsigned int);
  73     itkGetConstMacro( MaximumNumberOfLabels, unsigned int);
  74     itkSetMacro( BackgroundValue, InternalPixelType);
  75     itkGetConstMacro( BackgroundValue, InternalPixelType);
  76     itkSetMacro( ForegroundValue, InternalPixelType);
  77     itkGetConstMacro( ForegroundValue, InternalPixelType);
  78     itkSetMacro( NumberOfNewLabels, unsigned int);
  79     itkGetConstMacro( NumberOfNewLabels, unsigned int);
  80     itkSetMacro( MinimumObjectSize, unsigned int);
  81     itkGetConstMacro( MinimumObjectSize, unsigned int);
  82     itkSetMacro( MinimumNumberOfIterations, unsigned int);
  83     itkGetConstMacro( MinimumNumberOfIterations, unsigned int);
  84     //     // Convenience macro's: Built-in
  85     //     itkBooleanMacro (flag); //FlagOn FlagOff
  86     //     itkGetMacro(name, type);
  87     //     itkSetMacro(name, type);
  88     //     itkSetConstMacro( name, type);
  89     //     itkGetConstMacro( name, type);
  90     //     itkSetConstReferenceMacro(name, type);
  91     //     itkGetConstReferenceMacro(name, type);
  92     //     // Convenience macro's: Smartpointers
  93     //     itkSetObjectMacro(name, type);
  94     //     itkGetObjectMacro(name, type);
  95     //     itkSetConstObjectMacro(name, type);
  96     //     itkGetConstObjectMacro(name, type);
  97     //     itkSetConstReferenceObjectMacro(name, type);
  98     //     itkSetConstReference(name, type);
  99
 100
 101   protected:
 102
 103     //----------------------------------------
 104     // Constructor & Destructor
 105     //----------------------------------------
 106     DecomposeAndReconstructImageFilter();
 107     ~DecomposeAndReconstructImageFilter() {};
 108
 109     //----------------------------------------
 110     // Update
 111     //----------------------------------------
 112     // Generate Data
 113     void GenerateData(void);
 114
 115     //     // Threaded Generate Data
 116     //     void BeforeThreadedGenerateData(void );
 117     //     void ThreadedGenerateData(const OutputImageRegionType & outputRegionForThread, int threadId );
 118     //     void AfterThreadedGenerateData(void );
 119     //     // Override defaults
 120     //     virtual void GenerateInputRequestedRegion();
 121     //     virtual void GenerateOutputInformation (void);
 122     //     virtual void EnlargeOutputRequestedRegion(DataObject *data);
 123     void AllocateOutputs(){;}
 124     //----------------------------------------
 125     // Data members
 126     //----------------------------------------
 127     bool m_Verbose;
 128     SizeType m_Radius;
 129     unsigned int m_NumberOfNewLabels;
 130     bool m_FullyConnected;
 131     InputPixelType m_BackgroundValue;
 132     InputPixelType m_ForegroundValue;
 133     unsigned int  m_MaximumNumberOfLabels;
 134     unsigned int m_MinimumObjectSize;
 135     unsigned int m_MinimumNumberOfIterations;
 136   };
 137
 138
 139 } // end namespace clitk
 140
 141 #ifndef ITK_MANUAL_INSTANTIATION
 142 #include "clitkDecomposeAndReconstructImageFilter.txx"
 143 #endif
 144
 145 #endif // #define clitkDecomposeAndReconstructImageFilter_h
 146
 147