itk/clitkDecomposeThroughErosionImageFilter.h

   1 #ifndef clitkDecomposeThroughErosionImageFilter_h
   2 #define clitkDecomposeThroughErosionImageFilter_h
   3
   4 /* =================================================
   5  * @file   clitkDecomposeThroughErosionImageFilter.h
   6  * @author
   7  * @date
   8  *
   9  * @brief
  10  *
  11  ===================================================*/
  12
  13
  14 // clitk include
  15 #include "clitkIO.h"
  16 #include "clitkCommon.h"
  17 #include "clitkSetBackgroundImageFilter.h"
  18
  19 //itk include
  20 #include "itkImageToImageFilter.h"
  21 #include "itkBinaryThresholdImageFilter.h"
  22 #include "itkBinaryErodeImageFilter.h"
  23 #include "itkStatisticsImageFilter.h"
  24 #include "itkConnectedComponentImageFilter.h"
  25 #include "itkCastImageFilter.h"
  26 #include "itkBinaryBallStructuringElement.h"
  27 #include "itkRelabelComponentImageFilter.h"
  28
  29 namespace clitk
  30 {
  31
  32   template <class InputImageType, class OutputImageType>
  33   class ITK_EXPORT DecomposeThroughErosionImageFilter :
  34     public itk::ImageToImageFilter<InputImageType, OutputImageType>
  35   {
  36   public:
  37     //----------------------------------------
  38     // ITK
  39     //----------------------------------------
  40     typedef DecomposeThroughErosionImageFilter                                                 Self;
  41     typedef itk::ImageToImageFilter<InputImageType, OutputImageType>  Superclass;
  42     typedef itk::SmartPointer<Self>                                   Pointer;
  43     typedef itk::SmartPointer<const Self>                             ConstPointer;
  44
  45     // Method for creation through the object factory
  46     itkNewMacro(Self);
  47
  48     // Run-time type information (and related methods)
  49     itkTypeMacro( DecomposeThroughErosionImageFilter, ImageToImageFilter );
  50
  51     /** Dimension of the domain space. */
  52     itkStaticConstMacro(InputImageDimension, unsigned int, Superclass::InputImageDimension);
  53     itkStaticConstMacro(OutputImageDimension, unsigned int, Superclass::OutputImageDimension);
  54
  55     //----------------------------------------
  56     // Typedefs
  57     //----------------------------------------
  58     typedef typename OutputImageType::RegionType OutputImageRegionType;
  59     typedef int InternalPixelType;
  60     typedef typename InputImageType::PixelType InputPixelType;
  61     typedef typename OutputImageType::PixelType OutputPixelType;
  62     typedef typename InputImageType::SizeType SizeType;
  63
  64     //----------------------------------------
  65     // Set & Get
  66     //----------------------------------------
  67     itkBooleanMacro(Verbose);
  68     itkSetMacro( Verbose, bool);
  69     itkGetConstReferenceMacro( Verbose, bool);
  70     itkBooleanMacro(FullyConnected);
  71     itkSetMacro( FullyConnected, bool);
  72     itkGetConstReferenceMacro( FullyConnected, bool);
  73     itkSetMacro( Lower, InputPixelType);
  74     itkGetConstMacro( Lower, InputPixelType);
  75     itkSetMacro( Upper, InputPixelType);
  76     itkGetConstMacro( Upper, InputPixelType);
  77     itkSetMacro( Inside, InternalPixelType);
  78     itkGetConstMacro( Inside, InternalPixelType);
  79     itkSetMacro( Outside, InternalPixelType);
  80     itkGetConstMacro( Outside, InternalPixelType);
  81     itkSetMacro( ErosionPaddingValue, OutputPixelType);
  82     itkGetConstMacro( ErosionPaddingValue, OutputPixelType);
  83     void SetRadius ( const SizeType& s){ m_Radius=s; this->Modified();}
  84     SizeType GetRadius(void){return m_Radius;}
  85     itkSetMacro( NumberOfNewLabels, unsigned int);
  86     itkGetConstMacro( NumberOfNewLabels, unsigned int);
  87     itkSetMacro( MinimumObjectSize, unsigned int);
  88     itkGetConstMacro( MinimumObjectSize, unsigned int);
  89     itkSetMacro( MinimumNumberOfIterations, unsigned int);
  90     itkGetConstMacro( MinimumNumberOfIterations, unsigned int);
  91
  92   protected:
  93
  94     //----------------------------------------
  95     // Constructor & Destructor
  96     //----------------------------------------
  97     DecomposeThroughErosionImageFilter();
  98     ~DecomposeThroughErosionImageFilter() {};
  99
 100     //----------------------------------------
 101     // Update
 102     //----------------------------------------
 103     // Generate Data
 104     void GenerateData(void);
 105     void AllocateOutput(){;}
 106
 107     //     // Threaded Generate Data
 108     //     void BeforeThreadedGenerateData(void );
 109     //     void ThreadedGenerateData(const OutputImageRegionType & outputRegionForThread, int threadId );
 110     //     void AfterThreadedGenerateData(void );
 111     //     // Override defaults
 112     //     virtual void GenerateInputRequestedRegion();
 113     //     virtual void GenerateOutputInformation (void);
 114     //     virtual void EnlargeOutputRequestedRegion(DataObject *data);
 115     //     void AllocateOutputs();
 116     //----------------------------------------
 117     // Data members
 118     //----------------------------------------
 119     bool m_Verbose;
 120     bool m_FullyConnected;
 121     InputPixelType m_Lower;
 122     InputPixelType m_Upper;
 123     OutputPixelType m_ErosionPaddingValue;
 124     InputPixelType m_Inside;
 125     InputPixelType m_Outside;
 126     SizeType m_Radius;
 127     unsigned int m_NumberOfNewLabels;
 128     unsigned int m_MinimumObjectSize;
 129     unsigned int m_MinimumNumberOfIterations;
 130
 131   };
 132
 133
 134 } // end namespace clitk
 135
 136 #ifndef ITK_MANUAL_INSTANTIATION
 137 #include "clitkDecomposeThroughErosionImageFilter.txx"
 138 #endif
 139
 140 #endif // #define clitkDecomposeThroughErosionImageFilter_h
 141
 142