lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16 #include <creaWx.h>
  17
  18 //----------------------------------------------------------------------------------------------------------------
  19 // Class implementation
  20 //----------------------------------------------------------------------------------------------------------------
  21 /** @file wxContourMainFrame.cxx */
  22
  23         //------------------------------------------------------------------------------------------------------------
  24         // Constructors & Destructors
  25         //------------------------------------------------------------------------------------------------------------
  26
  27 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  28 char wxContourMainFrame::COPY = 'C';
  29
  30         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  31                 //: wxPanel(parent, id, title, pos, size, style)
  32                 //: wxWindow(parent, id, pos, size, style)
  33                 : wxPanel(parent, id, pos, size, style)
  34         {
  35                 m_mgr.SetManagedWindow(this);
  36                 _creatingContoursActive         = false;
  37                 _theViewPanel                           = NULL;
  38 //              _modelManager                           = NULL;
  39                 _instantPanel                           = NULL;
  40 //              _buttonsBar                                     = NULL;
  41 //              _gridPanel                                      = NULL;
  42 //              _drawToolsPanel                         = NULL;
  43 //              _operationsToolsPanel           = NULL;
  44                 //_autoFormsPanel                               = NULL;
  45 //              _standardToolsPanel                     = NULL;
  46 //              _editionToolsPanel                      = NULL;
  47 //              _listViewPanel                          = NULL;
  48 //              _sceneManager                           = NULL;
  49                 //_actualInstant                                = NULL;
  50                 _numberOfVariablesStatistics = 6+1;
  51
  52                 _refLineControl                         = NULL;
  53                 _refLineModel                           = NULL;
  54                 _refLineView                            = NULL;
  55                 _imageReslicer                          = NULL;
  56                 _thresholdTable                         = NULL;
  57                 _thresholdMapper                        = NULL;
  58                 _thresholdActor                         = NULL;
  59                 _actorPresent                           = false;
  60
  61                 // set up default notebook style
  62 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  63 //              m_notebook_theme = 0;
  64                 //wxContour_ActionCommandsID a;
  65
  66         }
  67
  68         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  69                 : wxPanel(parent, id, pos, size, style)
  70         {
  71                 m_mgr.SetManagedWindow(this);
  72                 _creatingContoursActive         = false;
  73                 _theViewPanel                           = NULL;
  74
  75                 _instantPanel                           = NULL;
  76                 _refLineControl                         = NULL;
  77                 _refLineModel                           = NULL;
  78                 _refLineView                            = NULL;
  79                 _imageReslicer                          = NULL;
  80                 _thresholdTable                         = NULL;
  81                 _thresholdMapper                        = NULL;
  82                 _thresholdActor                         = NULL;
  83                 _actorPresent                           = false;
  84
  85                 // set up default notebook style
  86                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  87                 m_notebook_theme = 0;
  88                 //wxContour_ActionCommandsID a;
  89                 _numberOfVariablesStatistics = 7;
  90
  91                 _datadir = datadir;
  92
  93
  94                 inredo = 0;
  95                 inundo = 0;
  96
  97                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
  98                 _performingOperation = new PerformingOperation();
  99
 100                 if(images.size() > 0)
 101                 {
 102                         _images = images;
 103                         this->setVectImages(images);
 104                 }
 105
 106 }
 107
 108 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 109 {
 110
 111         #if defined(__GNUC__)
 112                 std::string str_home(getenv("HOME"));
 113         #elif defined(_WIN32)
 114                         std::string str_home(getenv("USERPROFILE"));
 115         #endif
 116                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 117
 118         std::vector<std::string> conceptNameVect;
 119         std::vector<int> conceptSizeVect;
 120
 121         notebook = this->createNotebook();
 122
 123
 124         kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 125
 126
 127         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 128         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 129
 130 //-------------------------------------------------------------
 131         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 132         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 133
 134
 135         double val = _theViewPanel->getCurrentDeep();
 136         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 137         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 138         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 139         //*******************changeInstant();
 140         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 141
 142         this->configurePanels( );
 143
 144 }
 145
 146
 147         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
 148                 if(instance == NULL){
 149                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 150                 }
 151                 return instance;
 152         }
 153
 154         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 155         {
 156                 return kernelManager->getVectImages();
 157         }
 158
 159         wxContourMainFrame* wxContourMainFrame :: getInstance()
 160         {
 161                 return instance;
 162         }
 163
 164         void wxContourMainFrame :: resetInstance()
 165         {
 166                 instance->Destroy();
 167         }
 168
 169         wxContourMainFrame :: ~wxContourMainFrame()
 170         {
 171                 deleteAllContours();
 172                 _pannew->Close();
 173                 interfMainPanel::resetInstance();
 174                 delete kernelManager;
 175                 instance = NULL;
 176                 //_pannew->Destroy();
 177                 //delete _pannew;
 178
 179                 m_mgr.UnInit();
 180                 //delete m_mgr;
 181
 182                 //El problema al cerrar la aplicacion puede estar asociado
 183                 //a que  wxAUINotebook esta en la aplicacion
 184                 //principal (wxContourGUIExample)tambien
 185                 //EED????               delete _theViewPanel;
 186                 //EED????               delete _instantPanel;
 187                 //EED????               delete _buttonsBar;
 188                 //EED????               delete _actualInstant;
 189                 //EED????               delete _sceneManager;
 190         }
 191
 192
 193         //------------------------------------------------------------------------------------------------------------
 194         // Creational and initialization methods using WxAui
 195         //------------------------------------------------------------------------------------------------------------
 196         //
 197         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 198         {
 199                 wxSize client_size = GetClientSize();
 200                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 201                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 202                 return noteBook;
 203         }
 204
 205
 206         //------------------------------------------------------------------------------------------------------------
 207         // Creational and initialization methods
 208         //------------------------------------------------------------------------------------------------------------
 209         bool wxContourMainFrame :: configurePanels( )
 210         {
 211                 bool configured = _theViewPanel!=NULL;
 212
 213                 configured &= _theViewPanel!=NULL;
 214                 if( _theViewPanel!=NULL )
 215                 {
 216                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 217                         m_mgr.Update();
 218                 }
 219
 220
 221                 if( configured )
 222                 {
 223                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 224                         m_mgr.Update();
 225                 }
 226
 227                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 228                 m_mgr.Update();
 229
 230                 SetMinSize(wxSize(300,300));
 231                 m_mgr.Update();
 232                 return configured;
 233         }
 234
 235
 236         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 237                 {
 238                 bool configured = panel!=NULL;
 239                 configured &= panel!=NULL;
 240
 241                 if( configured )
 242                 {
 243                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 244                         m_mgr.Update();
 245                 }
 246                 return configured;
 247         }
 248
 249         //------------------------------------------------------------------------------------------------------------
 250         //  Attributes getters and setters
 251         //------------------------------------------------------------------------------------------------------------
 252
 253
 254
 255         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 256         {
 257                 _instantPanel = theInstantChooserPanel;
 258         }
 259
 260 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 261 //      {
 262 //              _buttonsBar = theButtonsBar;
 263 //      }
 264
 265 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 266 //      {
 267 //              _gridPanel = theGridPanel;
 268 //      }
 269
 270 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 271 //      {
 272 //              _drawToolsPanel = theDrawToolsPanel;
 273 //      }
 274
 275 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 276 //      {
 277 //              _operationsToolsPanel = theOperationsToolsPanel;
 278 //      }
 279
 280 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 281 //      {
 282 //              _autoFormsPanel = theAutoFormsPanel;
 283 //      }
 284
 285 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 286 //      {
 287 //              _standardToolsPanel= theStandardToolsPanel;
 288 //      }
 289
 290 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 291 //      {
 292 //              _editionToolsPanel =  theEditionToolsPanel;
 293 //      }
 294
 295 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 296 //      {
 297 //              _listViewPanel = theListViewPanel;
 298 //      }
 299
 300
 301
 302 void wxContourMainFrame::onCreateContourSpline( ){
 303
 304         //JCP 20-10-08 Undo redo implementation
 305         saveState();
 306         //JCP 20-10-08 Undo redo implementation
 307         createContour( 1 );
 308
 309 }
 310 void wxContourMainFrame::onCreateContourRectangle( ){
 311     //JCP 20-10-08 Undo redo implementation
 312         saveState();
 313         //JCP 20-10-08 Undo redo implementation
 314         createContour( 2 );
 315 }
 316 void wxContourMainFrame::onCreateContourCircle( ){
 317     //JCP 20-10-08 Undo redo implementation
 318         saveState();
 319         //JCP 20-10-08 Undo redo implementation
 320         createContour( 3 );
 321 }
 322
 323 void wxContourMainFrame::onCreateContourLine( ){
 324     //JCP 20-10-08 Undo redo implementation
 325         saveState();
 326         //JCP 20-10-08 Undo redo implementation
 327         createContour( 6 );
 328 }
 329
 330 //------------------------------------------------------------------------------------------------------------
 331
 332 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 333 {
 334         //Creating the manualContourModel and including in the model
 335         manualContourModel * manModelContour = factoryManualContourModel(panel );
 336
 337         std::vector<int> instantVector;
 338         _instantPanel->getInstant( instantVector );
 339         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 340
 341         /*std::vector<int> instantVector;
 342         _instantPanel->getInstant( instantVector );
 343         std::string theName;
 344         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 345         bool addedModel = theName.compare("") != 0;//??
 346
 347         if( addedModel )
 348         {
 349                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 350                 _theViewPanel->getSpacing(spc);
 351                 //Adding the manualContourControler to interface objects structure
 352                 //Adding the manualViewContour to interface objects structure
 353                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 354                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 355         }
 356 }
 357 void wxContourMainFrame :: createContour( int typeContour )
 358 {
 359         //Creating the manualContourModel and including in the model
 360         manualContourModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 361
 362
 363         std::vector<int> instantVector;
 364         _instantPanel->getInstant( instantVector );
 365         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 366
 367         /*std::vector<int> instantVector;
 368         _instantPanel->getInstant( instantVector );
 369         std::string theName;
 370         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 371         bool addedModel = theName.compare("") != 0;//??
 372         if( addedModel )
 373         {
 374                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 375                 _theViewPanel->getSpacing(spc);
 376                 //Adding the manualContourControler to interface objects structure
 377                 //Adding the manualViewContour to interface objects structure
 378                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 379                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 380         }
 381
 382 }
 383 manualContourModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 384
 385         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 386         manualContourModel *manModelContour=NULL;
 387         manModelContour = manModelContourBullEye;
 388         if (panel!=NULL){
 389                 int iCrown,sizeCrowns,iSector,sizeSectors;
 390                 double radioA,radioB,ang,angDelta ;
 391                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 392                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 393                 {
 394                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 395                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 396                         if (iCrown==sizeCrowns-1)
 397                         {
 398                                 radioA  = 0;
 399                         } else {
 400                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 401                         }
 402                         radioA=radioA/100.0;
 403                         radioB=radioB/100.0;
 404                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 405                         {
 406                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 407                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 408                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 409                         } // for iSector
 410                 } // for iCrown
 411         } // if _panelBullEyeOptions
 412
 413         return manModelContour;
 414 }
 415 void wxContourMainFrame :: saveState(){
 416
 417         std::string temp = kernelManager->saveState();
 418         saveFileWithContours(temp);
 419 }
 420
 421 void wxContourMainFrame::onDeleteContour(){
 422         //JCP 20-10-08 Undo redo implementation
 423                 saveState();
 424                 //JCP 20-10-08 Undo redo implementation
 425
 426                 std::vector<std::string> lstKeyNameToBeErase;
 427                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 428                 deleteContours( lstKeyNameToBeErase );
 429 /*JCP 19 - 11 - 08
 430                 int i,size=_sceneManager->getSelectedObjects().size();
 431                 for(i=0;i<size;i++)
 432                 {
 433                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 434                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 435                         if ( ispartofstaticlist>=0 )
 436                         {
 437                                 std::vector<int> tempVector;
 438                                 _instantPanel->getInstant( tempVector );
 439                                 Instant instant(&tempVector);
 440                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 441                         }
 442                 }
 443
 444                 std::vector<std::string> lstKeyName;
 445                 std::vector<std::string> lstKeyNameActualSlice;
 446                 std::vector<std::string> lstKeyNameToBeErase;
 447
 448                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 449                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 450                 int k,kSize=lstKeyNameToBeErase.size();
 451                 int j,jSize=lstKeyNameActualSlice.size();
 452                 bool ok;
 453                 for (k=0;k<kSize; k++)
 454                 {
 455                         ok=false;
 456                         for (j=0;j<jSize; j++)
 457                         {
 458                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 459                                 {
 460                                         ok=true;
 461                                 }
 462                         } // for j
 463                         if (ok==true)
 464                         {
 465                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 466                         } // if ok
 467                 } // for k
 468
 469                 deleteContours( lstKeyName );
 470 JCP 19 - 11 - 08*/
 471 }
 472
 473 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 474 {
 475         int i,size=keyNamesVector.size();
 476         for (i=0;i<size;i++)
 477         {
 478                 deleteContour( keyNamesVector[i] );
 479         }
 480 }
 481
 482 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 483         /*
 484         manualContourModel                      * cModel;
 485         manualViewBaseContour           * cViewer;
 486         manualContourBaseControler      * cControler;
 487
 488         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 489         cControler      = conwrapviewControl->getControler();*/
 490
 491         //JCP 21 - 11 - 2008
 492         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 493         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 494
 495         if (isedit  && ispartofstaticlst)
 496         {
 497                 _theViewPanel->removeFromScene(theKeyName);
 498
 499                 kernelManager->deleteCModel(theKeyName);
 500                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 501                 //cViewer               = conwrapviewControl->getViewer();
 502                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 503                 //cControler* conwrapviewControl->getControler();
 504 //EED Borrame
 505 //FILE *ff = fopen("c:/temp/wxVtkBaseView_SceneManagerStadistics.txt","a+");
 506 //fprintf(ff,"EED wxContourEventHandler::deleteContours() \n" );
 507 //fprintf(ff,"    %s %p\n",keyNamesVector[i].c_str(),  cControler );
 508 //fclose(ff);
 509         //      delete cModel;
 510         //      delete cViewer;
 511         //      delete cControler;
 512         } // if editable
 513 //JCP 21 - 11 - 08
 514 }
 515
 516 void wxContourMainFrame::onDeleteContoursActSlice(){
 517         //JCP 20-10-08 Undo redo implementation
 518         saveState();
 519         //JCP 20-10-08 Undo redo implementation
 520         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 521 }
 522 void wxContourMainFrame::onDeleteAllContours(){
 523         //JCP 20-10-08 Undo redo implementation
 524         saveState();
 525         deleteAllContours();
 526 }
 527 void wxContourMainFrame::deleteAllContours(){
 528         //JCP 20-10-08 Undo redo implementation
 529
 530         wxBusyCursor wait;
 531         std::vector<int> tempVector;
 532         _instantPanel->getInstant( tempVector );
 533
 534 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 535 //              the values in GetStart and GetEnd will then not be initialize also.
 536 //              We use instead the values given when initializing the _deletepanel.
 537
 538         //int minZ = _mbarrangeDeleteAll->GetStart();
 539         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 540         int minZ, maxZ;
 541
 542         minZ = 0;
 543         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 544
 545 //JCP --08-09-2008
 546
 547         _theViewPanel->getSceneManager()->removeSceneContours( );
 548         _theViewPanel->getSceneManager()->removeAllOutlines();
 549         kernelManager->removeAllOutlines();
 550 //JCP --08-09-2008
 551         /*
 552         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 553         {
 554                 _theViewPanel->getSceneManager()->removeSceneContours( );
 555                 _modelManager->removeAllOutlines();
 556                 _theViewPanel->getSceneManager()->removeAllOutlines();
 557
 558         } else {
 559                 for ( z=minZ ; z<=maxZ ; z++)
 560                 {
 561                         tempVector[1]=z;
 562                         Instant instant(&tempVector);
 563                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 564
 565                         sizeLstContourThings = lstContourThings.size();
 566                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 567                         {
 568                                 ContourThing **contourthing = lstContourThings[ii];
 569                                 deleteContour( (*contourthing)->getName() );
 570                         } //for ii
 571                 }// for z
 572         } // if
 573 JCP --08-09-2008 */
 574 }
 575
 576 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 577         _instantPanel->setConceptValue(name, value);
 578 }
 579
 580 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 581         return _instantPanel->getLastConceptData();
 582 }
 583 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 584         return _instantPanel->getIfConceptCheckedAt( name, pos );
 585 }
 586
 587 void wxContourMainFrame::changeInstant()
 588 {
 589                 std::vector<int> instantVect;
 590                 _instantPanel->getInstant( instantVect );
 591 //              Instant * theInstant = new Instant ( &instantVect );
 592
 593                 //Setting the actual instant
 594                 //_actualInstant = theInstant;
 595
 596                 kernelManager->setInstant(instantVect);
 597                 //_modelManager->setInstant( _actualInstant );
 598
 599             onThresholdChange();
 600                 updateInstantOutlines();
 601                 updateInstantImageData();
 602                 updateInstantAxes();
 603 }
 604
 605
 606 void wxContourMainFrame :: updateInstantOutlines()
 607 {
 608         _theViewPanel->removeSceneContours();
 609         _theViewPanel->addNameWrapperToScene();
 610
 611         //for( int i=0; i<size; i++)
 612         //{
 613         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 614         //}
 615 }
 616
 617 int wxContourMainFrame::getNamesWrappingSize(){
 618         return kernelManager->getNamesWrappingSize();
 619 }
 620 std::string wxContourMainFrame::getNameWrapping(int i){
 621         return kernelManager->getNameWrapping(i);
 622 }
 623
 624 void wxContourMainFrame::updateInstantImageData()
 625 {
 626         std::vector<int> inst;
 627         _instantPanel->getInstant(inst);
 628
 629         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 630         if(img!=NULL){
 631                 _theViewPanel->changeImage(img);
 632                 showAxis(false);
 633         }else{
 634                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 635                 _theViewPanel->setImageSlice(z);
 636         }
 637 }
 638
 639 void wxContourMainFrame::updateInstantAxes()
 640 {
 641 }
 642
 643
 644 void wxContourMainFrame::onChangeDeep(int val){
 645         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 646         changeInstant();
 647 }
 648
 649
 650 void wxContourMainFrame::onCopy(){
 651         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 652
 653         std::vector<int> tempVector;
 654         _instantPanel->getInstant( tempVector );
 655     _performingOperation->reset();
 656         _performingOperation->setStartCommand( COPY );
 657         _performingOperation->setStartOperationInstantVector( tempVector );
 658         _performingOperation->setKeyNamesOperationElems( currentSelection );
 659 }
 660
 661 void wxContourMainFrame::onPaste(){
 662
 663
 664         char theStartCommand = _performingOperation->getStartCommand();
 665         if (  theStartCommand == COPY )
 666         {
 667                 //JCP 20-10-08 Undo redo implementation
 668                 saveState();
 669                 //JCP 20-10-08 Undo redo implementation
 670                 std::vector<int> tempVector;
 671                 _instantPanel->getInstant( tempVector );
 672                 _performingOperation->setEndOperationInstantVector ( tempVector );
 673                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 674                 int i,size = elems.size();
 675                 for( i=0; i<size; i++ )
 676                 {
 677                         createCopyContourOf( elems[i], tempVector, i>0 );
 678                 }
 679         }
 680 }
 681 void wxContourMainFrame::onUndo(){
 682         std::string filename;
 683         if(kernelManager->onUndoSaveFile(filename)){
 684                 saveFileWithContours(filename);
 685         }
 686         if(kernelManager->onUndo(filename)){
 687                 loadState(filename);
 688         }
 689 }
 690 void wxContourMainFrame::onRedo(){
 691         std::string filename;
 692         if(kernelManager->onRedo(filename)){
 693                 loadState(filename);
 694         }
 695
 696 }
 697 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 698 {
 699         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 700         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 701         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 702 }
 703
 704 ///AD: 03-09    Copy the object and apply the given transformation
 705 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 706 {
 707         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 708         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 709
 710         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 711         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 712
 713         double pnt1X = refPoint1->GetX();
 714         double pnt1Y = refPoint1->GetY();
 715 //      double pnt1Z = refPoint1->GetZ();
 716         double pnt2X = refPoint2->GetX();
 717         double pnt2Y = refPoint2->GetY();
 718 //      double pnt2Z = refPoint2->GetZ();
 719
 720         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 721         vtkTransform *t = vtkTransform::New();
 722
 723         t->PostMultiply();
 724         t->Identity();
 725         t->Translate(-pnt1X, -pnt1Y, 0);
 726         t->RotateZ(-angle);
 727         t->Scale(-1,1,1);
 728         t->RotateZ(angle);
 729         t->Translate(pnt1X, pnt1Y, 0);
 730         t->Update();
 731
 732         int i,size=manualModel->GetSizeLstPoints();
 733         for (i=0;i<size;i++)
 734         {
 735                 manualPoint * mp = manualModel->GetManualPoint(i);
 736                 float vecIn[3];
 737                 float vecOut[3];
 738                 vecIn[0]=mp->GetX();
 739                 vecIn[1]=mp->GetY();
 740                 vecIn[2]=mp->GetZ();
 741                 t->TransformPoint( vecIn, vecOut );
 742                 mp->SetPointX( vecOut[0] );
 743                 mp->SetPointY( vecOut[1] );
 744                 mp->SetPointZ( vecOut[2] );
 745         }
 746
 747         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 748 }
 749
 750 void wxContourMainFrame ::loadState(std::string filename){
 751         char tmp[255];
 752         FILE *pFile=fopen(filename.c_str(),"r+");
 753
 754         fscanf(pFile,"%s",tmp); // --CreaContour--
 755
 756         fscanf(pFile,"%s",tmp); // Version
 757         fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 758         std::string version(tmp);
 759
 760         deleteAllContours();
 761
 762         //AD:02-06-09
 763         if (version=="1.0.2")
 764         {
 765                 loadContours(pFile);
 766         }
 767
 768         //AD:02-06-09
 769         else if (version=="1.0.1")
 770         {
 771                 loadContours(pFile);
 772         }
 773
 774         //AD:02-06-09
 775         else if (version=="1.0.0")
 776         {
 777                 loadContours(pFile);
 778         }
 779
 780         fclose(pFile);
 781 }
 782
 783 void wxContourMainFrame ::loadContours( FILE *pFile )
 784 {
 785         char tmp[255];
 786         fscanf(pFile,"%s",tmp); // NumberOfContours
 787         fscanf(pFile,"%s",tmp); // ##
 788         int numberOfContours = atoi(tmp);
 789
 790         std::vector<int> instantVector;
 791         int typeContourModel;
 792         manualContourModel *manModelContour;
 793         int typeView;
 794
 795         fscanf(pFile,"%s",tmp); // ImageDimensions
 796         fscanf(pFile,"%s",tmp); // X
 797         fscanf(pFile,"%s",tmp); // Y
 798         fscanf(pFile,"%s",tmp); // Z
 799
 800         fscanf(pFile,"%s",tmp); // ImageSpacing
 801         fscanf(pFile,"%s",tmp); // X
 802         fscanf(pFile,"%s",tmp); // Y
 803         fscanf(pFile,"%s",tmp); // Z
 804
 805         int i;
 806         for (i=0;i<numberOfContours;i++)
 807         {
 808                 instantVector.clear();
 809                 fscanf(pFile,"%s",tmp); // Instant
 810                 fscanf(pFile,"%s",tmp); // 1
 811                 instantVector.push_back( atoi(tmp) );
 812                 fscanf(pFile,"%s",tmp); // 2
 813                 instantVector.push_back( atoi(tmp) );
 814                 fscanf(pFile,"%s",tmp); // 3
 815                 instantVector.push_back( atoi(tmp) );
 816                 fscanf(pFile,"%s",tmp); // 4
 817                 instantVector.push_back( atoi(tmp) );
 818                 fscanf(pFile,"%s",tmp); // 5
 819                 instantVector.push_back( atoi(tmp) );
 820                 fscanf(pFile,"%s",tmp); // 6
 821                 instantVector.push_back( atoi(tmp) );
 822
 823                 fscanf(pFile,"%s",tmp); // TypeContourModel
 824                 fscanf(pFile,"%s",tmp); // ##
 825                 typeContourModel = atoi(tmp);
 826
 827                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 828                 manModelContour->Open(pFile);
 829
 830                 fscanf(pFile,"%s",tmp); // TypeView
 831                 fscanf(pFile,"%s",tmp); // ##
 832                 typeView = atoi(tmp);
 833
 834                 std::string theName;
 835                 theName = kernelManager->createOutline( manModelContour, instantVector );
 836                 bool addedModel = theName.compare("") != 0;
 837                 if( addedModel )
 838                 {
 839                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 840                         _theViewPanel->getSpacing(spc);
 841                         //Adding the manualContourControler to interface objects structure
 842                         //Adding the manualViewContour to interface objects structure
 843                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 844                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 845                 }
 846         }// for  numberOfContours
 847 }
 848
 849 void wxContourMainFrame::onLoad()
 850 {
 851         char tmp[255];
 852         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 853         if (dialog.ShowModal() == wxID_OK)
 854         {
 855                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 856                 FILE *pFile=fopen(fileNameContourROI.c_str(),"r+");
 857
 858                 fscanf(pFile,"%s",tmp); // --CreaContour--
 859
 860                 fscanf(pFile,"%s",tmp); // Version
 861                 fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 862                 std::string version(tmp);
 863
 864                 //AD:02-06-09
 865                 if (version=="1.0.2")
 866                 {
 867                         openContours(pFile,2);
 868                 }
 869
 870                 //AD:02-06-09
 871                 else if (version=="1.0.1")
 872                 {
 873                         openContours(pFile,1);
 874                 }
 875
 876                 //AD:02-06-09
 877                 else if (version=="1.0.0")
 878                 {
 879                         openContours(pFile,0);
 880                 }
 881
 882                 fclose(pFile);
 883         }
 884         _theViewPanel->getSceneManager()->removeSceneContours();
 885         changeInstant();
 886 }
 887
 888 //AD: 29-05-09
 889 void wxContourMainFrame::onSave(){
 890         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
 891         if (dialog.ShowModal() == wxID_OK)
 892         {
 893                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 894                 kernelManager->setCurrentFileName(fileNameContourROI);
 895                 saveFileWithContours( fileNameContourROI );
 896         }
 897 }
 898
 899 //AD: 29-05-09
 900 void wxContourMainFrame::saveFileWithContours( std::string filename )
 901 {
 902
 903         FILE *pFile=fopen(filename.c_str(),"w+");
 904         std::vector< std::string > lstNameThings;
 905         int i,sizeLstNameThings;
 906
 907         fprintf(pFile,"--CreaContour--\n");
 908         fprintf(pFile,"Version %s\n", "1.0.2" );
 909
 910         // Normal Contours
 911         lstNameThings           = kernelManager->GetLstNameThings();
 912         sizeLstNameThings       = lstNameThings.size();
 913         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
 914
 915         vtkImageData *image = _images[0];
 916
 917         int dimRange[3];
 918         image->GetDimensions(dimRange);
 919
 920         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
 921
 922         double spaRange[3];
 923         image->GetSpacing(spaRange);
 924
 925         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
 926
 927         for (i=0 ; i<sizeLstNameThings ; i++)
 928         {
 929                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 930                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 931         }// for i
 932
 933         //-- Contours Statics
 934         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 935         sizeLstNameThings       = lstNameThings.size();
 936         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
 937         for (i=0 ; i<sizeLstNameThings ; i++)
 938         {
 939                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 940                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 941         }// for i
 942         fclose(pFile);
 943 }
 944
 945 //AD:04-06-09
 946 void wxContourMainFrame::openContours( FILE *pFile, int version )
 947 {
 948         char tmp[255];
 949         fscanf(pFile,"%s",tmp); // NumberOfContours
 950         fscanf(pFile,"%s",tmp); // ##
 951         int numberOfContours = atoi(tmp);
 952
 953         std::vector<int> instantVector;
 954         int typeContourModel;
 955         manualContourModel *manModelContour;
 956         int typeView;
 957
 958         vtkImageData *image = _images[0];
 959         int imageDim[3];
 960         double imageSpac[3];
 961         int tempDim[3];
 962         double tempSpac[3];
 963
 964         bool compatible = true;
 965
 966         //Version==2
 967         if (version==2)
 968         {
 969                 image->GetDimensions(imageDim);
 970                 image->GetSpacing(imageSpac);
 971
 972                 fscanf(pFile,"%s",tmp); // ImageDimensions
 973                 fscanf(pFile,"%s",tmp); // X
 974                 tempDim[0] = atoi(tmp);
 975                 fscanf(pFile,"%s",tmp); // Y
 976                 tempDim[1] = atoi(tmp);
 977                 fscanf(pFile,"%s",tmp); // Z
 978                 tempDim[2] = atoi(tmp);
 979
 980                 fscanf(pFile,"%s",tmp); // ImageSpacing
 981                 fscanf(pFile,"%s",tmp); // X
 982                 tempSpac[0] = atof(tmp);
 983                 fscanf(pFile,"%s",tmp); // Y
 984                 tempSpac[1] = atof(tmp);
 985                 fscanf(pFile,"%s",tmp); // Z
 986                 tempSpac[2] = atof(tmp);
 987
 988                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 3
 989                 if (imageDim[0]!=tempDim[0] || imageDim[1]!=tempDim[1] || imageSpac[0]!=tempSpac[0] || imageSpac[1]!=tempSpac[1])
 990                 {
 991                         compatible = false;
 992                 }
 993         }
 994
 995         if (compatible==true)
 996         {
 997                 int i;
 998                 for (i=0;i<numberOfContours;i++)
 999                 {
1000                         instantVector.clear();
1001                         fscanf(pFile,"%s",tmp); // Instant
1002
1003                         fscanf(pFile,"%s",tmp); // 1
1004                         instantVector.push_back( atoi(tmp) );
1005                         fscanf(pFile,"%s",tmp); // 2
1006                         instantVector.push_back( atoi(tmp) );
1007                         fscanf(pFile,"%s",tmp); // 3
1008                         instantVector.push_back( atoi(tmp) );
1009                         fscanf(pFile,"%s",tmp); // 4
1010                         instantVector.push_back( atoi(tmp) );
1011                         fscanf(pFile,"%s",tmp); // 5
1012                         instantVector.push_back( atoi(tmp) );
1013                         fscanf(pFile,"%s",tmp); // 6
1014                         instantVector.push_back( atoi(tmp) );
1015
1016
1017                         fscanf(pFile,"%s",tmp); // TypeContourModel
1018                         fscanf(pFile,"%s",tmp); // ##
1019                         typeContourModel = atoi(tmp);
1020
1021                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1022                         manModelContour->Open(pFile);
1023
1024                         fscanf(pFile,"%s",tmp); // TypeView
1025                         fscanf(pFile,"%s",tmp); // ##
1026                         typeView = atoi(tmp);
1027
1028                         std::string theName;
1029                         theName = kernelManager->createOutline( manModelContour, instantVector );
1030                         bool addedModel = theName.compare("") != 0;
1031                         if( addedModel )
1032                         {
1033                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1034                                 _theViewPanel->getSpacing(spc);
1035                                 //Adding the manualContourControler to interface objects structure
1036                                 //Adding the manualViewContour to interface objects structure
1037                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1038                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1039                         }
1040
1041                         if (version==0) //StaticContours (will appear in all slices)
1042                         {
1043                                 Instant instant(&instantVector);
1044                                 kernelManager->changeContourOfManager( theName , &instant );
1045                         }
1046
1047                 }// for  numberOfContours
1048         }
1049
1050         else if (compatible==false)
1051         {
1052                 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(250,160));
1053                 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1054                 wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1055
1056                 wxString lstOptOperation[2];
1057                 lstOptOperation[0]=_T("By Dimension");
1058                 lstOptOperation[1]=_T("By Spacing");
1059                 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1060
1061                 dialSizer->Add( new wxStaticText(dial,-1,_T("The actual image is not compatible with the "))  , 0, wxGROW );
1062                 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1063                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1064                 dialSizer->Add(radioOpts,0,wxGROW);
1065                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1066                 dialSizer->Add(buttonsSizer,0,wxGROW);
1067                 dial->SetSizer(dialSizer, true);
1068                 dial->Layout();
1069                 dial->ShowModal();
1070
1071                 if (dial->GetReturnCode() == wxID_OK)
1072                 {
1073                         int typeOfTransformation = radioOpts->GetSelection();
1074
1075                         int i;
1076                         for (i=0;i<numberOfContours;i++)
1077                         {
1078                                 instantVector.clear();
1079                                 fscanf(pFile,"%s",tmp); // Instant
1080
1081                                 fscanf(pFile,"%s",tmp); // 1
1082                                 instantVector.push_back( atoi(tmp) );
1083                                 fscanf(pFile,"%s",tmp); // 2
1084                                 instantVector.push_back( atoi(tmp) );
1085                                 fscanf(pFile,"%s",tmp); // 3
1086                                 instantVector.push_back( atoi(tmp) );
1087                                 fscanf(pFile,"%s",tmp); // 4
1088                                 instantVector.push_back( atoi(tmp) );
1089                                 fscanf(pFile,"%s",tmp); // 5
1090                                 instantVector.push_back( atoi(tmp) );
1091                                 fscanf(pFile,"%s",tmp); // 6
1092                                 instantVector.push_back( atoi(tmp) );
1093
1094
1095                                 fscanf(pFile,"%s",tmp); // TypeContourModel
1096                                 fscanf(pFile,"%s",tmp); // ##
1097                                 typeContourModel = atoi(tmp);
1098
1099                                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1100
1101                                 if (typeOfTransformation==0)
1102                                 {
1103                                         manModelContour->OpenAndTransformDimension(pFile, imageDim, tempDim);
1104                                 }
1105                                 else if (typeOfTransformation==1)
1106                                 {
1107                                         manModelContour->OpenAndTransformSpacing(pFile, imageSpac, tempSpac);
1108                                 }
1109
1110                                 fscanf(pFile,"%s",tmp); // TypeView
1111                                 fscanf(pFile,"%s",tmp); // ##
1112                                 typeView = atoi(tmp);
1113
1114                                 std::string theName;
1115                                 theName = kernelManager->createOutline( manModelContour, instantVector );
1116                                 bool addedModel = theName.compare("") != 0;
1117                                 if( addedModel )
1118                                 {
1119                                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1120                                         _theViewPanel->getSpacing(spc);
1121                                         //Adding the manualContourControler to interface objects structure
1122                                         //Adding the manualViewContour to interface objects structure
1123                                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1124                                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1125                                 }
1126
1127                                 if (version==0) //StaticContours (will appear in all slices)
1128                                 {
1129                                         Instant instant(&instantVector);
1130                                         kernelManager->changeContourOfManager( theName , &instant );
1131                                 }
1132                         }// for  numberOfContours
1133                 }
1134         }
1135 }
1136
1137 void wxContourMainFrame::RefreshInterface(){
1138         changeInstant();
1139         _theViewPanel->RefreshInterface();
1140         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1141         //wxvtk2dbaseview->Refresh();
1142 }
1143
1144 vtkImageData* wxContourMainFrame::getImageData(){
1145         return _theViewPanel->getImageData();
1146 }
1147
1148 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1149 {
1150         //JCP 20-10-08 Undo redo implementation
1151         saveState();
1152         //JCP 20-10-08 Undo redo implementation
1153
1154         wxBusyCursor wait;
1155         int                                     x                                       = _theViewPanel->GetX();
1156         int                                     y                                       = _theViewPanel->GetY();
1157         int                                     z                                       = _theViewPanel->GetZ();
1158         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1159         RefreshInterface();
1160 }
1161
1162 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1163 {
1164         int typeofcontour = 1;
1165         //Image Data
1166         vtkImageData    *imagedata      = getImageData();
1167
1168         //Tipo de pixeles a utilizar internamente en ITK
1169         typedef   float  InternalPixelType;
1170         const     unsigned int    Dimension = 2;
1171         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1172
1173         //Tipo de pixeles de salida 1
1174         typedef unsigned char OutputPixelType;
1175         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1176
1177         //Tipo de pixeles de salida 2
1178         typedef unsigned short OutputPixelType2;
1179         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1180
1181         //DefiniciÛn del thresholder
1182         typedef itk::BinaryThresholdImageFilter<
1183                                                         InternalImageType,
1184                                                         OutputImageType    >    ThresholdingFilterType;
1185
1186         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1187         typedef itk::CastImageFilter<
1188                                 OutputImageType, OutputImageType2 >  CastFilterType;
1189
1190         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1191         typedef itk::CastImageFilter<
1192                                 OutputImageType2, InternalImageType >  CastFilterType2;
1193
1194         //Tercer tipo de conversiÛn
1195         typedef itk::RescaleIntensityImageFilter<
1196                                                                 InternalImageType,
1197                                                                 OutputImageType >   CastFilterType3;
1198
1199         //Cuarto tipo de conversiÛn
1200         typedef itk::RescaleIntensityImageFilter<
1201                                                                 OutputImageType,
1202                                                                 OutputImageType >   CastFilterType4;
1203
1204         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1205
1206         thresholder->SetLowerThreshold( 0.0 );
1207         thresholder->SetUpperThreshold( 128 );
1208
1209         thresholder->SetOutsideValue(  255  );
1210         thresholder->SetInsideValue(  0 );
1211
1212         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1213         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1214         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1215         typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1216
1217         ConnectorType::Pointer connector= ConnectorType::New();
1218         ConnectorType2::Pointer connector2= ConnectorType2::New();
1219
1220
1221         CastFilterType::Pointer filter=CastFilterType::New();
1222         CastFilterType2::Pointer filter2=CastFilterType2::New();
1223
1224         connector->SetInput( imagedata );
1225         filter2->SetInput(connector->GetOutput());
1226
1227         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1228                                                                 InternalImageType,
1229                                                                 InternalImageType >  SmoothingFilterType;
1230
1231         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1232
1233         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1234                                                                 InternalImageType,
1235                                                                 InternalImageType >  GradientFilterType;
1236
1237         typedef   itk::SigmoidImageFilter<
1238                                                                 InternalImageType,
1239                                                                 InternalImageType >  SigmoidFilterType;
1240
1241         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1242
1243         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1244
1245         sigmoid->SetOutputMinimum(  0.0  );
1246         sigmoid->SetOutputMaximum(  255.0  );
1247
1248
1249         typedef  itk::FastMarchingImageFilter<
1250                                                                 InternalImageType,
1251                                                                 InternalImageType >    FastMarchingFilterType;
1252
1253
1254         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1255
1256         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1257                                         InternalImageType >    GeodesicActiveContourFilterType;
1258         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1259                                                                                 GeodesicActiveContourFilterType::New();
1260
1261         typedef  itk::ZeroCrossingImageFilter<
1262                                                                 InternalImageType,
1263                                                                 InternalImageType >    ZeroCrossingFilterType;
1264         ZeroCrossingFilterType::Pointer zeroCrossing =
1265                                                         ZeroCrossingFilterType::New();
1266
1267         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1268
1269         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1270         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1271         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1272
1273         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1274         int it=atoi(  crea::wx2std(iter).c_str() );
1275         geodesicActiveContour->SetNumberOfIterations( it );
1276
1277         smoothing->SetInput( filter2->GetOutput() );
1278         gradientMagnitude->SetInput( smoothing->GetOutput() );
1279         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1280         fastMarching->SetInput( sigmoid->GetOutput() );
1281         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1282         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1283
1284         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1285         //thresholder->SetInput( zeroCrossing->GetOutput() );
1286         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1287         connector2->SetInput( thresholder->GetOutput()  );
1288
1289
1290         smoothing->SetTimeStep( 0.125 );
1291         smoothing->SetNumberOfIterations(  5 );
1292         smoothing->SetConductanceParameter( 9.0 );
1293
1294
1295         const double sigma = atof(  crea::wx2std(sigm).c_str() );
1296         gradientMagnitude->SetSigma(  sigma  );
1297
1298         const double alpha =  atof(  crea::wx2std(alf).c_str() );
1299         const double beta  =  atof(  crea::wx2std(bet).c_str() );
1300
1301         sigmoid->SetAlpha( alpha );
1302         sigmoid->SetBeta(  beta  );
1303
1304         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1305         typedef FastMarchingFilterType::NodeType       NodeType;
1306
1307         NodeContainer::Pointer seeds = NodeContainer::New();
1308
1309         InternalImageType::IndexType  seedPosition;
1310         seedPosition[0] = x;
1311         seedPosition[1] = y;
1312
1313         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1314
1315         NodeType node;
1316
1317         const double seedValue = - initialDistance;
1318
1319         node.SetValue( seedValue );
1320         node.SetIndex( seedPosition );
1321
1322         seeds->Initialize();
1323         seeds->InsertElement( 0, node );
1324
1325         fastMarching->SetTrialPoints( seeds );
1326
1327         fastMarching->SetSpeedConstant( 1.0 );
1328
1329         fastMarching->SetOutputSize(
1330                         connector->GetOutput()->GetBufferedRegion().GetSize() );
1331
1332         fastMarching->SetStoppingValue( 800 );
1333         try
1334     {
1335
1336         connector2->Update();
1337         vtkImageData *idata = connector2->GetOutput();
1338
1339         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1340
1341         cntVTK->SetInput( idata );
1342
1343         cntVTK->SetNumberOfContours( 1 );
1344         cntVTK->SetValue( 0, 255 );
1345         cntVTK->Update( );
1346         cntVTK->UpdateInformation();
1347
1348         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1349         cpd->SetInput( cntVTK->GetOutput( ) );
1350         cpd->Update( );
1351         cpd->UpdateInformation();
1352
1353         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1354         conn->SetExtractionModeToLargestRegion( );
1355         conn->SetInput( cpd->GetOutput( ) );
1356         conn->Update( );
1357         conn->UpdateInformation();
1358
1359         vtkStripper* vtkstripper = vtkStripper::New( );
1360         vtkstripper->SetInput( conn->GetOutput() );
1361         vtkstripper->Update();
1362         vtkstripper->UpdateInformation();
1363
1364
1365         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1366         //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1367         polyDataResult->Update( );
1368         polyDataResult->UpdateInformation();
1369
1370         //EED
1371                 /*
1372         ofstream myfile;
1373         myfile.open ("C:/Creatis/example.txt");
1374         myfile << "\n";
1375         polyDataResult->Print(myfile);
1376         myfile << "-------------------------------------\n";
1377         polyDataResult->GetLines()->Print(myfile);
1378         myfile.close();*/
1379
1380         cntVTK          -> Delete();
1381         cpd                     -> Delete();
1382         conn            -> Delete();
1383
1384
1385         //--Calculating control points
1386
1387         std::vector<double> vecX;
1388         std::vector<double> vecY;
1389         std::vector<double> vecXo;
1390         std::vector<double> vecYo;
1391         std::vector<double>::iterator vecXoi;
1392         std::vector<double>::iterator vecYoi;
1393         std::vector<double> vecZ;
1394
1395         std::vector<double> vecCtrlPointX;
1396         std::vector<double> vecCtrlPointY;
1397         std::vector<double> vecCtrlPointZ;
1398
1399
1400         double *p;
1401         double xAct=0;
1402         double yAct=0;
1403         int ii,size=polyDataResult->GetNumberOfPoints();
1404         ofstream myfile;
1405         myfile.open ("C:/Creatis/example2.txt");
1406
1407         size=polyDataResult->GetNumberOfPoints();
1408         for (ii=0;ii<size;ii++)
1409         {
1410                 if(ii==0)
1411                 {
1412                         xAct=x;
1413                         yAct=y;
1414                 }
1415                 p       = polyDataResult->GetPoint(ii);
1416                 double x=p[0];
1417                 double y=p[1];
1418                 /*if(fabs(yAct-y)>20)
1419                 {
1420                         if((xAct-x)>1 || (xAct-x)<-1)
1421                         {
1422                         vecX.push_back( p[0] );
1423                         vecY.push_back( p[1] );
1424                         myfile <<p[0]<<","<<p[1]<<"\n";
1425                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1426                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1427                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1428                         vecZ.push_back( 900 );
1429                         xAct=x;
1430                         yAct=y;
1431                         }
1432                         else
1433                         {
1434                                 vecXo.push_back(p[0]);
1435                                 vecYo.push_back(p[1]);
1436                         }
1437
1438                 }
1439                 else*/ if(fabs(xAct-x)>11)
1440                 {
1441                         vecXo.push_back(p[0]);
1442                         vecYo.push_back(p[1]);
1443                 }
1444                 else
1445                 {
1446                 vecX.push_back( p[0] );
1447                 myfile <<p[0]<<","<<p[1]<<"\n";
1448                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1449                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1450                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1451                 vecY.push_back( p[1] );
1452                 vecZ.push_back( 900 );
1453                 xAct=x;
1454                 yAct=y;
1455                 }
1456
1457
1458         }
1459
1460         while(!vecXo.empty())
1461         {
1462                 vecX.push_back(vecXo.back());
1463                 //std::cout<<" x Siguiente "<<vecXo.back();
1464                 vecXo.pop_back();
1465                 vecZ.push_back( 900 );
1466         }
1467         while(!vecYo.empty())
1468         {
1469                 vecY.push_back(vecYo.back());
1470                         vecYo.pop_back();
1471         }
1472         myfile.close();
1473
1474         /*for(int l=0;l<vecX.size();l++)
1475         {
1476                 if(l==0)
1477                 {
1478             vecXo.push_back(p[0]);
1479                         vecYo.push_back(p[1]);
1480                 }
1481                 else
1482                 {
1483                         if(vecXoi[l-1]==)
1484                         {
1485                         }
1486                 }
1487
1488         }*/
1489
1490         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1491
1492         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1493
1494         int method=2;
1495         if (method==0){
1496                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1497         }
1498         else if (method==1){
1499                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1500         }
1501         else if (method==2){
1502                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1503                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1504         }
1505         //--Adding contour to the system
1506
1507         std::vector<int> actualInstantVector;
1508         _instantPanel->getInstant( actualInstantVector );
1509         actualInstantVector[1]=z;
1510
1511         int j,sizeCtrPt = vecCtrlPointX.size();
1512
1513         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1514         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1515         if (sizeCtrPt>=3){
1516                 for (j=0 ; j<sizeCtrPt ; j++)
1517                 {
1518                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1519                 } // for
1520                 std::string theName;
1521                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1522                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1523                 bool addedModel = theName.compare("") != 0;
1524                 if( addedModel )
1525                 {
1526                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1527                         _theViewPanel->getSpacing(spc);
1528                         //Adding the manualContourControler to interface objects structure
1529                         //Adding the manualViewContour to interface objects structure
1530                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1531                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1532                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1533                 }       // if addedModel
1534         } // if sizeCtrPt
1535
1536
1537
1538                  WriterType::Pointer writer = WriterType::New();
1539          CastFilterType3::Pointer caster = CastFilterType3::New();
1540
1541                  caster->SetInput( gradientMagnitude->GetOutput() );
1542                  writer->SetInput( caster->GetOutput() );
1543                  writer->SetFileName("Gradient Magnitude.png");
1544                  caster->SetOutputMinimum(   0 );
1545                  caster->SetOutputMaximum( 255 );
1546                  writer->Update();
1547
1548                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1549                  WriterType::Pointer writer2 = WriterType::New();
1550
1551                  caster2->SetInput( sigmoid->GetOutput() );
1552                  writer2->SetInput( caster2->GetOutput() );
1553                  writer2->SetFileName("Sigmoid.png");
1554                  caster2->SetOutputMinimum(   0 );
1555                  caster2->SetOutputMaximum( 255 );
1556                  writer2->Update();
1557
1558                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1559                  WriterType::Pointer writer3 = WriterType::New();
1560
1561                  caster3->SetInput( fastMarching->GetOutput() );
1562                  writer3->SetInput( caster3->GetOutput() );
1563                  writer3->SetFileName("FastMarching.bmp");
1564                  caster3->SetOutputMinimum(   0 );
1565                  caster3->SetOutputMaximum( 255 );
1566                  writer3->Update();
1567
1568                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1569                  WriterType::Pointer writer4 = WriterType::New();
1570
1571                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1572                  writer4->SetInput( caster4->GetOutput() );
1573                  writer4->SetFileName("GeodesicActiveContour.png");
1574                  caster4->SetOutputMinimum(   0 );
1575                  caster4->SetOutputMaximum( 255 );
1576                  writer4->Update();
1577
1578                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1579                  WriterType::Pointer writer5 = WriterType::New();
1580
1581                  caster5->SetInput( zeroCrossing->GetOutput() );
1582                  writer5->SetInput( caster5->GetOutput() );
1583                  writer5->SetFileName("ZeroCrossing.bmp");
1584                  caster5->SetOutputMinimum(   0 );
1585                  caster5->SetOutputMaximum( 255 );
1586                  writer5->Update();
1587     }
1588   catch( itk::ExceptionObject & excep )
1589     {
1590     std::cerr << "Exception caught !" << std::endl;
1591     std::cerr << excep << std::endl;
1592     }
1593 }
1594
1595 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1596
1597         //JCP 20-10-08 Undo redo implementation
1598         saveState();
1599         //JCP 20-10-08 Undo redo implementation
1600
1601         wxBusyCursor wait;
1602         int                                     x                                       = _theViewPanel->GetX();
1603         int                                     y                                       = _theViewPanel->GetY();
1604         int                                     z                                       = _theViewPanel->GetZ();
1605         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1606         RefreshInterface();
1607 }
1608
1609
1610 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1611 {
1612         int typeofcontour = 1;
1613         //--Extracting Contour
1614         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1615         vtkImageData    *imagedata      = getImageData();
1616 //              double                  *range          = imagedata->GetScalarRange();
1617 //              double                  thr                     = 1;
1618
1619         vtkImageReslice *imageReslice = vtkImageReslice::New();
1620 //EED
1621 //              double spc[3];
1622 //              imagedata->GetSpacing(spc);
1623 //              x = x*spc[0];
1624 //              y = y*spc[1];
1625 //              z = z*spc[3];
1626
1627         imageReslice->SetInput( imagedata );
1628         imageReslice->SetInformationInput(imagedata);
1629         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1630         imageReslice->SetResliceAxesOrigin(0,0,z);
1631         imageReslice->SetOutputDimensionality(2);
1632         imageReslice->SetInterpolationModeToLinear();
1633
1634         imagedata = imageReslice->GetOutput();
1635         imagedata->Update();
1636         imagedata->UpdateInformation();
1637
1638         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1639         cntVTK->SetInput( imagedata );
1640
1641         cntVTK->SetNumberOfContours( 1 );
1642         //cntVTK->SetValue( 0, vmin );
1643 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1644         cntVTK->SetValue( 1, isovalue );
1645 //      cntVTK->SetValue( 1, vmax );
1646         cntVTK->Update( );
1647         cntVTK->UpdateInformation();
1648
1649         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1650         cpd->SetInput( cntVTK->GetOutput( ) );
1651         cpd->ConvertLinesToPointsOff( );
1652         cpd->Update( );
1653         cpd->UpdateInformation();
1654
1655         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1656         conn->SetExtractionModeToClosestPointRegion( );
1657         //conn->SetMaxRecursionDepth( 3000 );
1658
1659         conn->SetInput( cpd->GetOutput( ) );
1660
1661         conn->SetClosestPoint( x, y, 0 );
1662         conn->Update( );
1663         conn->UpdateInformation();
1664
1665         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1666         cpd2->SetInput( conn->GetOutput( ) );
1667         cpd2->Update();
1668         cpd2->UpdateInformation();
1669
1670         vtkStripper* vtkstripper = vtkStripper::New( );
1671         vtkstripper->SetInput( cpd2->GetOutput() );
1672         vtkstripper->Update();
1673         vtkstripper->UpdateInformation();
1674
1675
1676         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1677
1678         polyDataResult->Update( );
1679         polyDataResult->UpdateInformation();
1680
1681 /* EED
1682 ofstream myfile;
1683 myfile.open ("c:/temp/example.txt");
1684 myfile << "\n";
1685 polyDataResult->Print(myfile);
1686 myfile << "-------------------------------------\n";
1687 polyDataResult->GetLines()->Print(myfile);
1688 myfile.close();
1689 */
1690
1691         cntVTK          -> Delete();
1692         cpd2            -> Delete();
1693         cpd                     -> Delete();
1694         conn            -> Delete();
1695
1696
1697 //--Calculating control points
1698
1699         std::vector<double> vecX;
1700         std::vector<double> vecY;
1701         std::vector<double> vecZ;
1702
1703         std::vector<double> vecCtrlPointX;
1704         std::vector<double> vecCtrlPointY;
1705         std::vector<double> vecCtrlPointZ;
1706
1707
1708         double *p;
1709         int ii,size=polyDataResult->GetNumberOfPoints();
1710         int id;
1711         for (ii=1;ii<=size;ii++)
1712         {
1713                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1714                 p       = polyDataResult->GetPoint(id);
1715 //              double x=p[0];
1716 //              double y=p[1];
1717                 vecX.push_back( p[0] );
1718                 vecY.push_back( p[1] );
1719                 vecZ.push_back( 900 );
1720 //                      vecZ.push_back( p[2] );
1721         }
1722
1723
1724         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1725         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1726
1727 //PROOFS
1728         /*if (methodRadiobox->GetSelection()==0){
1729                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1730         }
1731         if (methodRadiobox->GetSelection()==1){
1732                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1733         }
1734         if (methodRadiobox->GetSelection()==2){
1735                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1736                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1737         }*/
1738
1739         if (method==0){
1740                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1741         }
1742         else if (method==1){
1743                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1744         }
1745         else if (method==2){
1746                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1747                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1748         }
1749
1750         //--Adding contour to the system
1751
1752         std::vector<int> actualInstantVector;
1753         _instantPanel->getInstant( actualInstantVector );
1754         actualInstantVector[1]=z;
1755
1756         int j,sizeCtrPt = vecCtrlPointX.size();
1757         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1758         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1759         if (sizeCtrPt>=3){
1760                 for (j=0 ; j<sizeCtrPt ; j++)
1761                 {
1762                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1763                 } // for
1764                 std::string theName;
1765                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1766                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1767                 bool addedModel = theName.compare("") != 0;
1768                 if( addedModel )
1769                 {
1770                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1771                         _theViewPanel->getSpacing(spc);
1772                         //Adding the manualContourControler to interface objects structure
1773                         //Adding the manualViewContour to interface objects structure
1774                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1775                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1776                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1777                 }       // if addedModel
1778         } // if sizeCtrPt
1779 }
1780 int wxContourMainFrame::GetImageDataSizeZ(){
1781         return _theViewPanel->GetImageDataSizeZ();
1782 }
1783
1784 void wxContourMainFrame::GetImageDataRange(double *range){
1785         _theViewPanel->GetImageDataRange(range);
1786 }
1787
1788 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
1789         //JCP 20-10-08 Undo redo implementation
1790         saveState();
1791         //JCP 20-10-08 Undo redo implementation
1792
1793         wxBusyCursor wait;
1794         int                                     x                                       = _theViewPanel->GetX();
1795         int                                     y                                       = _theViewPanel->GetY();
1796         int z;
1797         double porcent;
1798         wxString tmpString;
1799         double totalZ = maxZ-minZ+1;
1800         for( z=minZ ; z<=maxZ ; z++ )
1801         {
1802                 porcent = 100.0* (z-minZ)/totalZ;
1803                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
1804                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
1805                 //_staticTextSegmentation->SetLabel(tmpString);
1806                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
1807         }
1808         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
1809         RefreshInterface();
1810 }
1811
1812
1813 //Creates a reference line to be used as the axis of the mirroring
1814 void wxContourMainFrame::referenceLine()
1815 {
1816         if (_refLineControl==NULL)
1817         {
1818                 wxBusyCursor wait;
1819                 double spc[3];
1820
1821                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
1822                 vtkimagedata->GetSpacing(spc);
1823
1824                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1825
1826                 _refLineControl = new manualLineControler();
1827                 _refLineModel   = new manualContourModelLine();
1828                 _refLineView = new manualViewLine();
1829                 _refLineView->SetModel( _refLineModel );
1830                 _refLineView->SetWxVtkBaseView( viewer2D );
1831                 _refLineView->SetRange( 2 );
1832                 _refLineView->SetZ( 1200 );
1833
1834                 _refLineView->SetSpacing(spc);
1835
1836                 _refLineView->SetColorNormalContour(0, 0, 1);
1837                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
1838                 _refLineView->SetWidthLine(4);
1839
1840                 _refLineControl->SetModelView( _refLineModel , _refLineView );
1841                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
1842                 style->AddInteractorStyleMaracas( _refLineControl );
1843                 _refLineModel->SetCloseContour(false);
1844                 _refLineControl->CreateNewManualContour();
1845
1846 //EED??         double z = _refLineControl->GetZ();
1847         /*
1848                 _refLineControl->AddPoint(50,100,z);
1849                 _refLineControl->AddPoint(80,40,z);
1850                 _refLineControl->SetCompleteCreation(true);
1851
1852                 _refLineModel->AddPoint(50,100,z);
1853                 _refLineModel->AddPoint(80,40,z);
1854                 _refLineModel->UpdateSpline();
1855
1856                 _refLineView->UpdateViewPoint(0);
1857                 _refLineView->UpdateViewPoint(1);
1858         */
1859
1860                 _refLineControl->SetActive(true);
1861                 _refLineView->RefreshContour();
1862         }
1863 }
1864
1865 //Hides the referenceLine
1866 void wxContourMainFrame::refLineHide()
1867 {
1868         if (_refLineControl!=NULL)
1869         {
1870                 if (_refLineControl->GetActive())
1871                 {
1872                         _refLineView->RemoveCompleteContourActor();
1873                         _refLineControl->SetEditable(false);
1874                         _refLineControl->SetActive(false);
1875
1876                         RefreshInterface();
1877                 }
1878         }
1879 }
1880
1881 //Shows the referenceLine
1882 void wxContourMainFrame::refLineShow()
1883 {
1884         if (_refLineControl!=NULL)
1885         {
1886                 if (_refLineControl->GetActive()==false)
1887                 {
1888                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1889
1890                         _refLineView->SetModel( _refLineModel );
1891                         _refLineView->SetWxVtkBaseView( viewer2D );
1892                         _refLineView->SetRange( 2 );
1893                         _refLineView->SetZ( 1200 );
1894
1895                         _refLineControl->SetModelView( _refLineModel , _refLineView );
1896                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
1897                         style->AddInteractorStyleMaracas( _refLineControl );
1898                         _refLineControl->CreateNewManualContour();
1899                         _refLineControl->SetActive(true);
1900                         _refLineView->RefreshContour();
1901
1902                         RefreshInterface();
1903                 }
1904         }
1905 }
1906
1907 void wxContourMainFrame::refLineChangeWidth(int width)
1908 {
1909         _refLineView->SetWidthLine(width);
1910         _refLineView->RefreshContour();
1911
1912         RefreshInterface();
1913 }
1914
1915
1916 void wxContourMainFrame::onMirror()
1917 {
1918         //AD:02-09
1919         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1920         std::vector<std::string> filterCurrentSelection;
1921
1922         std::vector<int> tempVector;
1923         _instantPanel->getInstant( tempVector );
1924     _performingOperation->reset();
1925         _performingOperation->setStartCommand( COPY );
1926         _performingOperation->setStartOperationInstantVector( tempVector );
1927         _performingOperation->setKeyNamesOperationElems( currentSelection );
1928
1929         char theStartCommand = _performingOperation->getStartCommand();
1930         if (  theStartCommand == COPY )
1931         {
1932                 //JCP 20-10-08 Undo redo implementation
1933                 saveState();
1934                 //JCP 20-10-08 Undo redo implementation
1935                 std::vector<int> tempVector;
1936                 _instantPanel->getInstant( tempVector );
1937                 _performingOperation->setEndOperationInstantVector ( tempVector );
1938                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
1939                 int i,size = elems.size();
1940                 for( i=0; i<size; i++ )
1941                 {
1942                         createMirrorContourOf( elems[i], tempVector, i>0 );
1943                 }
1944         }
1945
1946         //deleteContour( _refName );
1947         //_refName = "";
1948 }
1949
1950 void wxContourMainFrame::onThreshold()
1951 {
1952         int     z = _theViewPanel->GetZ();
1953         double range[2];
1954
1955         vtkImageData * img = getImageData();
1956         img->GetScalarRange(range);
1957
1958         int minTot = floor (range[0]);
1959         int maxTot = ceil (range[1]);
1960
1961         double minMax[2];
1962         _pannew->onThresholdInstantChange(minMax);
1963         int minVal = floor (minMax[0]);
1964         int maxVal = floor (minMax[1]);
1965
1966         if (!_actorPresent)
1967         {
1968                 if (_imageReslicer==NULL)
1969                 {
1970                         _imageReslicer = vtkImageReslice::New();
1971                         _imageReslicer->SetInput( img );
1972                         _imageReslicer->SetInformationInput(img);
1973                         _imageReslicer->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1974                         _imageReslicer->SetOutputDimensionality(2);
1975                         _imageReslicer->SetInterpolationModeToLinear();
1976                 }
1977
1978                 _imageReslicer->SetResliceAxesOrigin(0,0,z);
1979
1980                 img = _imageReslicer->GetOutput();
1981                 img->Update();
1982                 img->UpdateInformation();
1983
1984                 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
1985
1986                 if (_thresholdTable==NULL)
1987                 {
1988                         //Lookup Table
1989                         _thresholdTable = vtkLookupTable::New();
1990                         _thresholdTable->SetNumberOfTableValues(maxTot+1);
1991                         _thresholdTable->SetTableRange(range);
1992                         _thresholdTable->SetAlphaRange(0, 1);
1993                         _thresholdTable->SetValueRange(0, 1);
1994                         _thresholdTable->SetSaturationRange(0, 0);
1995                         _thresholdTable->SetRampToLinear( );
1996                 }
1997
1998                 //Assign a fake color for the upper image, and set the white as transparent
1999                 int i;
2000                 for(i = minTot; i <= maxTot; i++)
2001                 {
2002                         if( i >= minVal && i <= maxVal )
2003                         {
2004                                 _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1);
2005                         }
2006                         else if( i >= minTot && i < minVal )
2007                         {
2008                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2009                         }
2010                         else if( i > maxVal && i < maxTot )
2011                         {
2012                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2013                         }
2014                         else
2015                         {
2016                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2017                         }
2018                 }
2019                 _thresholdTable->Build( );
2020
2021                 if (_thresholdMapper==NULL)
2022                 {
2023                         _thresholdMapper = vtkImageMapToColors::New( );
2024                 }
2025
2026                 _thresholdMapper->SetLookupTable( _thresholdTable );
2027                 _thresholdMapper->SetInput( img );
2028
2029                 if (_thresholdActor==NULL)
2030                 {
2031                         _thresholdActor = vtkImageActor::New( );
2032                         _thresholdActor->SetOpacity( 0.6 );
2033                         _thresholdActor->InterpolateOn(  );
2034                         _thresholdActor->SetPosition( 0,0, 900-1 );
2035                 }
2036
2037                 _thresholdActor->SetInput( _thresholdMapper->GetOutput() );
2038
2039                 baseView->GetRenderer()->AddActor( _thresholdActor );
2040                 _actorPresent = true;
2041         }
2042
2043         else
2044         {
2045                 _imageReslicer->SetResliceAxesOrigin(0,0,z);
2046                 img = _imageReslicer->GetOutput();
2047                 img->Update();
2048                 img->UpdateInformation();
2049
2050                 //Assign a fake color for the upper image, and set the white as transparent
2051                 int i;
2052                 for(i = minTot; i <= maxTot; i++)
2053                 {
2054                         if( i >= minVal && i <= maxVal )
2055                         {
2056                                 _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1);
2057                         }
2058                         else if( i >= minTot && i < minVal )
2059                         {
2060                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2061                         }
2062                         else if( i > maxVal && i < maxTot )
2063                         {
2064                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2065                         }
2066                         else
2067                         {
2068                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2069                         }
2070                 }
2071
2072                 _thresholdTable->Build( );
2073                 _thresholdMapper->SetLookupTable( _thresholdTable );
2074                 _thresholdMapper->SetInput( img );
2075                 _thresholdActor->SetInput( _thresholdMapper->GetOutput() );
2076         }
2077                         /*
2078                                 vtkImageViewer2* viewer = vtkImageViewer2::New();
2079                                 viewer->SetInput( upperImageActor->GetInput() );
2080                                 viewer->SetColorLevel((range[1]-range[0])/2);
2081                                 viewer->SetColorWindow(range[1]);
2082                                 viewer->GetRenderer()->AddActor( upperImageActor );
2083                                 viewer->Render();
2084                         */
2085         _theViewPanel->RefreshInterface();
2086 }
2087
2088
2089 void wxContourMainFrame::onThresholdChange()
2090 {
2091         if (_actorPresent)
2092         {
2093                 onThreshold();
2094         }
2095 }
2096
2097 void wxContourMainFrame::onThresholdInterpolation(bool interpolate)
2098 {
2099         if (_thresholdActor!=NULL)
2100         {
2101                 if (interpolate)
2102                 {
2103                         _thresholdActor->InterpolateOn( );
2104                 }
2105
2106                 else
2107                 {
2108                         _thresholdActor->InterpolateOff( );
2109                 }
2110
2111                 _theViewPanel->RefreshInterface();
2112         }
2113 }
2114
2115 void wxContourMainFrame::onThresholdChangeOpacity (int opacity)
2116 {
2117         if (_actorPresent)
2118         {
2119                 _thresholdActor->SetOpacity(opacity*0.1);
2120         }
2121
2122         _theViewPanel->RefreshInterface();
2123 }
2124
2125 void wxContourMainFrame::onThresholdRemove()
2126 {
2127         if (_actorPresent)
2128         {
2129                 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
2130                 baseView->GetRenderer()->RemoveActor( _thresholdActor );
2131                 _actorPresent = false;
2132         }
2133
2134         _theViewPanel->RefreshInterface();
2135 }
2136
2137 void wxContourMainFrame::showAxis(bool show)
2138 {
2139         _theViewPanel->SetVisibleAxis(show);
2140         _theViewPanel->Refresh();
2141 }
2142
2143
2144 void wxContourMainFrame::onRigidPressed(){
2145         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2146         int elementsSelected = currentSelection.size();
2147
2148         if ( elementsSelected >= 1 ){
2149                 //JCP 20-10-08 Undo redo implementation
2150                 saveState();
2151                 //JCP 20-10-08 Undo redo implementation
2152
2153                 std::vector<int> tempVector;
2154                 _instantPanel->getInstant( tempVector );
2155                 Instant instant(&tempVector);
2156
2157                 int i , size=currentSelection.size();
2158                 for ( i=0 ; i<size ; i++ )
2159                 {
2160                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2161                 } // i
2162         }
2163 }
2164
2165 void wxContourMainFrame::onWidthOfContour(double width){
2166
2167         _theViewPanel->removeSceneContours();
2168         _theViewPanel->SetWidthContour(width);
2169
2170         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2171
2172         RefreshInterface();
2173 }
2174
2175 int wxContourMainFrame::getColorWindow()
2176 {
2177         /*
2178         double range[2];
2179         vtkImageData * img = getImageData();
2180         img->GetScalarRange(range);
2181
2182         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2183
2184         return (int)range[1];
2185         */
2186         return _theViewPanel->getColorWindow();
2187 }
2188
2189 int wxContourMainFrame::getWindowLevel()
2190 {
2191         /*
2192         double range[2];
2193         vtkImageData * img = getImageData();
2194         img->GetScalarRange(range);
2195
2196         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2197
2198         return (int)range[1];
2199         */
2200         return _theViewPanel->getWindowLevel();
2201 }
2202
2203 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2204         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2205
2206         RefreshInterface();
2207 }
2208
2209 void wxContourMainFrame::onInterpolation(bool interpolate){
2210         _theViewPanel->onInterpolation(interpolate);
2211         RefreshInterface();
2212 }
2213
2214 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2215         _instantPanel->setConceptValue( name, actual );
2216 }
2217
2218 void wxContourMainFrame::resetAppend(){
2219         kernelManager->resetAppend();
2220
2221 }
2222
2223 void wxContourMainFrame::onSpreadAdd(){
2224         std::vector<double> vecX;
2225         std::vector<double> vecY;
2226         std::vector<double> vecZ;
2227         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2228
2229         std::vector<int> tempVector;
2230         _instantPanel->getInstant( tempVector );
2231
2232         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2233
2234         interfMainPanel::getInstance()->appendStringSpread(val);
2235
2236 }
2237
2238 void wxContourMainFrame::onSpreadGo(int type){
2239
2240         //JCP 20-10-08 Undo redo implementation
2241         saveState();
2242         //JCP 20-10-08 Undo redo implementation
2243
2244         wxBusyCursor wait;
2245         std::vector<double> vecCtrlPointX;
2246         std::vector<double> vecCtrlPointY;
2247         std::vector<double> vecCtrlPointZ;
2248         double  minZ,maxZ;
2249         int z;
2250
2251         std::vector<int> tempVector;
2252         _instantPanel->getInstant( tempVector );
2253 //              tempVector[1];
2254
2255         kernelManager->getMaxMinZ(&minZ,&maxZ);
2256 //JSTG_16-07-08_----------------------------------------------------------------
2257         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2258         kernelManager->CalculeSplinePropagation();
2259
2260         double          totalZ = maxZ-minZ+1;
2261         double          porcent;
2262         wxString        tmpString;
2263 //--------------------------------------------------------------------
2264         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2265         {
2266                 porcent = 100.0* (z-minZ)/totalZ;
2267                 int numero = (int)(z-minZ+1)/(int)totalZ;
2268                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2269
2270                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2271
2272                 int typeofcontour = 1;
2273                 std::string theName;
2274                 manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2275
2276                 if( manModelContour!=NULL ){
2277                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2278                         this->_theViewPanel->getSpacing(spc);
2279                         //Adding the manualContourControler to interface objects structure
2280                         //Adding the manualViewContour to interface objects structure
2281                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2282                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2283                 } // if addedModel
2284         }
2285         if(z > maxZ){
2286                 porcent = 100.0;
2287                 int numero = (int)(z-minZ+1)/(int)totalZ;
2288                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2289
2290                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2291         }// for z
2292         //RefreshInterface();
2293 }
2294
2295 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2296
2297 }
2298
2299 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2300         std::vector<int> tempVector;
2301         _instantPanel->getInstant(tempVector);
2302         //Asignation of slide number should be different ex by name
2303         tempVector[1]=slide;
2304         return kernelManager->getOutlinesNameAtInstant(tempVector);
2305 }
2306
2307 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ)
2308 {
2309         int maxContourGroup     =       0;
2310
2311         ContourExtractData      *contourextractdata = new ContourExtractData();
2312
2313         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2314
2315         std::vector<manualContourModel*> lstManConMod;
2316         std::vector<manualContourModel*> lstManConModTmp;
2317         std::vector<manualContourModel*> lstManConModExp;
2318         std::vector<double> pLstValue;
2319         std::vector<double> pLstValuePosX;
2320         std::vector<double> pLstValuePosY;
2321         std::vector<double> pLstValuePosZ;
2322
2323         int             resultSize;
2324         int             resultGrayRangeCount;
2325         double  resultMin;
2326         double  resultMax;
2327         double  resultAverage;
2328         double  resultStandardeviation;
2329
2330         std::vector<int> tempVector;
2331         _instantPanel->getInstant( tempVector );
2332
2333         vtkImageData *imagedata = _theViewPanel->getImageData();
2334         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2335         int z;
2336         int ii,sizeLstContourThings;
2337
2338
2339         int minZ,maxZ;
2340         double totalZ;
2341         double porcent;
2342         wxString tmpString;
2343
2344
2345
2346         if (selection==0 ) // actual slice
2347         {
2348                 std::vector<int> tempVector;
2349                 _instantPanel->getInstant( tempVector );
2350                 int actualSlice = tempVector[1];
2351                 minZ    = actualSlice;
2352                 maxZ    = actualSlice;
2353         }
2354         else if (selection==2 ) // All slices
2355         {
2356                 minZ    = 0;
2357                 maxZ    = sizeZ-1;
2358         }
2359         else if (selection==1 ) // slice range
2360         {
2361                 minZ    = minimumZ;
2362                 maxZ    = maximumZ;
2363         }
2364
2365
2366         totalZ  = maxZ-minZ+1;
2367         contourextractdata->SetImage( imagedata);
2368
2369 // For each slice..
2370         for ( z=minZ ; z<=maxZ ; z++ )
2371         {
2372
2373                 porcent = 100.0* (z-minZ)/totalZ;
2374                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2375
2376                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2377                 //_staticTextInformation->SetLabel(tmpString);
2378
2379                 //Extraction data from contours of each slice
2380                 contourextractdata->SetZtoBeAnalys(z);
2381
2382                 tempVector[1]=z;
2383                 Instant instant(&tempVector);
2384                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2385                 sizeLstContourThings = lstContourThings.size();
2386
2387                 lstManConMod.clear();
2388                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2389                 {
2390                         ContourThing **contourthing = lstContourThings[ii];
2391                         lstManConMod.push_back( (*contourthing)->getModel() );
2392                 }
2393                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2394
2395
2396                 wxString tempString;
2397                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2398                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2399                 //_grid->SetRowLabelValue(z, tempString );
2400 //EED004
2401                 int iContourGroup,sizeContourGroup;
2402                 if (typeContourGroup==3) // contour separete
2403                 {
2404                         sizeContourGroup=lstManConModExp.size();
2405                         if ( maxContourGroup<sizeContourGroup )
2406                         {
2407                                 maxContourGroup=sizeContourGroup;
2408                         }
2409                 } else {  // contour AND OR XOR
2410                         sizeContourGroup=1;
2411                         maxContourGroup=1;
2412                 }
2413
2414                 int tmpIntA;
2415
2416
2417
2418                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2419                         lstManConModTmp.clear();
2420                         if (typeContourGroup==3) // contour separete
2421                         {
2422                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2423                         } else {  // contour AND OR XOR
2424                                 lstManConModTmp = lstManConModExp;
2425                         }
2426
2427                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2428
2429                         pLstValue.clear();
2430                         pLstValuePosX.clear();
2431                         pLstValuePosY.clear();
2432                         pLstValuePosZ.clear();
2433                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2434                                                                                                                 &pLstValuePosX,
2435                                                                                                                 &pLstValuePosY,
2436                                                                                                                 &pLstValuePosZ);
2437                         // Statistics of each slice.
2438                         contourextractdata->Statistics( &pLstValue,
2439                                                                                         minimumZ,
2440                                                                                         maximumZ,
2441                                                                                         &resultGrayRangeCount,
2442                                                                                         &resultSize,
2443                                                                                         &resultMin,
2444                                                                                         &resultMax,
2445                                                                                         &resultAverage,
2446                                                                                         &resultStandardeviation);
2447
2448                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2449                         {
2450                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2451                         }
2452
2453                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2454
2455                         tempString.Printf(_T("%d"),resultSize);
2456                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2457
2458                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2459                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2460
2461                         tempString.Printf(_T("%f"),resultMin);
2462                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2463
2464                         tempString.Printf(_T("%f"),resultMax);
2465                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2466
2467                         tempString.Printf(_T("%f"),resultAverage);
2468                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2469
2470                         tempString.Printf(_T("%f"),resultStandardeviation);
2471                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2472
2473
2474                 } // for iContourGroup
2475         } // for z
2476
2477         int iTitleGroup;
2478         wxString tmpTitleString;
2479         int tmpIntB;
2480         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2481         {
2482                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2483                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2484                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2485
2486                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2487                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2488                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2489                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2490                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2491                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2492                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2493         }
2494
2495         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2496         delete contourextractdata;
2497 }
2498
2499 //AD: 29-05-09
2500 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2501         int typeContourGroup, bool XYZValues, bool contourImage, bool statistics)
2502 {
2503         if (XYZValues)
2504         {
2505                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2506         }
2507
2508         if (contourImage)
2509         {
2510                 vtkImageData * mask;
2511                 vtkImageData * value;
2512                 this->getMaskValue(&mask, &value, typeContourGroup);
2513                 this->SaveImageResult( directory , namefile, mask, value);
2514         }
2515
2516         if (statistics)
2517         {
2518                 std::ostringstream name;
2519                 name << filename << ".xls";
2520
2521
2522                 FILE *pFile=fopen(name.str().c_str(),"w+");
2523
2524                 int sizeZ = _theViewPanel->GetImageDataSizeZ();
2525
2526                 wxString tmpString;
2527                 int i,j,maxX,maxY=sizeZ;
2528                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2529
2530                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2531                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2532                 {
2533                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2534                                 fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2535                 }
2536                 fprintf(pFile,"\n" );
2537
2538
2539
2540                 for ( j=0; j<maxY ; j++)
2541                 {
2542                         fprintf(pFile,"%d\t" , j );
2543                         for (i=0 ; i<maxX ; i++){
2544                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2545                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2546                         } // for i
2547                         fprintf(pFile,"\n"  );
2548                 } // for j
2549
2550                 fclose(pFile);
2551         }
2552 }
2553
2554 //AD: 29-05-09
2555 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2556 {
2557         wxBusyCursor wait;
2558         ContourExtractData      *contourextractdata = new ContourExtractData();
2559         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2560         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2561
2562         std::vector<manualContourModel*> lstManConMod;
2563         std::vector<manualContourModel*> lstManConModTmp;
2564         std::vector<manualContourModel*> lstManConModExp;
2565         std::vector<double> pLstValue;
2566         std::vector<double> pLstValuePosX;
2567         std::vector<double> pLstValuePosY;
2568         std::vector<double> pLstValuePosZ;
2569
2570         std::vector<int> tempVector;
2571         _instantPanel->getInstant( tempVector );
2572
2573         vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2574         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2575         int z;
2576         int ii,sizeLstContourThings;
2577
2578
2579         int minZ,maxZ;
2580         double totalZ;
2581         double porcent;
2582         wxString tmpString;
2583         minZ    = 0;// _mbarrange->GetStart();
2584         maxZ    = sizeZ;//_mbarrange->GetEnd();
2585         totalZ  = maxZ-minZ+1;
2586
2587         contourextractdata->SetImage( imagedata);
2588
2589 // For each slice..
2590         for ( z=0 ; z<sizeZ ; z++)
2591         {
2592
2593                 porcent = 100.0* (z-minZ)/totalZ;
2594
2595                 tmpString.Printf(_T("Saving Values"));
2596                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2597                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2598                 //_staticTextInformation->SetLabel(tmpString);
2599
2600
2601                 //Extraction data from contours of each slice
2602                 contourextractdata->SetZtoBeAnalys( z);
2603
2604                 tempVector[1]=z;
2605                 Instant instant(&tempVector);
2606                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2607                 sizeLstContourThings = lstContourThings.size();
2608
2609                 lstManConMod.clear();
2610                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2611                 {
2612                         ContourThing **contourthing = lstContourThings[ii];
2613                         lstManConMod.push_back( (*contourthing)->getModel() );
2614                 }
2615                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2616
2617
2618 //EED004
2619
2620                 int iContourGroup,sizeContourGroup;
2621                 if (typeContourGroup==3) // contour separete
2622                 {
2623                         sizeContourGroup=lstManConModExp.size();
2624                 } else {  // contour AND OR XOR
2625                         sizeContourGroup=1;
2626                 }
2627
2628                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2629                         lstManConModTmp.clear();
2630                         if (typeContourGroup==3) // contour separete
2631                         {
2632                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2633                         } else {  // contour AND OR XOR
2634                                 lstManConModTmp = lstManConModExp;
2635                         }
2636
2637                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2638
2639                         pLstValue.clear();
2640                         pLstValuePosX.clear();
2641                         pLstValuePosY.clear();
2642                         pLstValuePosZ.clear();
2643                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2644                                                                                                                 &pLstValuePosX,
2645                                                                                                                 &pLstValuePosY,
2646                                                                                                                 &pLstValuePosZ);
2647
2648                         std::string temp = directory + "/" + namefile + "-slice";
2649                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2650                         temp = temp + ".txt";
2651
2652                         // LG 14/01/09 : using crea
2653                         wxString filename = crea::std2wx(temp);
2654                         /*filename.Printf(_T("%s"),directory.c_str());
2655                         filename.append(_T("\\"));
2656                         filename.append(_T("%s"),namefile.c_str());
2657                         filename.append(_T("-slice"));
2658                         filename.append(_T("%d"),z);
2659                         filename.append(_T("-cont"));
2660                         filename.append(_T("%d"),iContourGroup);
2661                         filename.append(_T(".txt"));*/
2662                         //                      filename.Printf(temp.c_str());
2663
2664
2665
2666                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2667                         fprintf(pFile,"value \t x \t y \t z\n"  );
2668                         int iLstValue,sizeLstValue=pLstValue.size();
2669                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2670                         {
2671                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2672                         }
2673                         fclose(pFile);
2674                 } // for  iContourGroup
2675         } // for z
2676         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2677         //_staticTextInformation->SetLabel( _T("") );
2678         delete contourextractdata;
2679 }
2680
2681 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup){
2682         wxBusyCursor wait;
2683         ContourExtractData      *contourextractdata = new ContourExtractData( true );
2684         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2685         if (typeContourGroup==3)
2686         {
2687                 typeContourGroup=1;
2688         }
2689         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2690
2691         std::vector<manualContourModel*> lstManConMod;
2692         std::vector<manualContourModel*> lstManConModTmp;
2693         std::vector<manualContourModel*> lstManConModExp;
2694
2695         std::vector<int> tempVector;
2696         _instantPanel->getInstant( tempVector );
2697
2698         vtkImageData *imagedata = _theViewPanel->getImageData();
2699         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2700         int z;
2701         int ii,sizeLstContourThings;
2702
2703
2704         int minZ,maxZ;
2705         double totalZ;
2706         double porcent;
2707
2708         wxString tmpString;
2709
2710         minZ    = 0;// _mbarrange->GetStart();
2711         maxZ    = sizeZ;//_mbarrange->GetEnd();
2712         totalZ  = maxZ-minZ+1;
2713
2714         contourextractdata->SetImage( imagedata);
2715
2716 // For each slice..
2717         for ( z=0 ; z<sizeZ ; z++)
2718         {
2719
2720                 porcent = 100.0* (z-minZ)/totalZ;
2721                 tmpString.Printf(_T("Saving Values"));
2722                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2723                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2724
2725                 //Extraction data from contours of each slice
2726                 contourextractdata->SetZtoBeAnalys( z);
2727
2728                 tempVector[1]=z;
2729                 Instant instant(&tempVector);
2730                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2731                 sizeLstContourThings = lstContourThings.size();
2732
2733                 lstManConMod.clear();
2734                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2735                 {
2736                         ContourThing **contourthing = lstContourThings[ii];
2737                         lstManConMod.push_back( (*contourthing)->getModel() );
2738                 }
2739                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2740
2741
2742                 int iContourGroup,sizeContourGroup;
2743                 if (typeContourGroup==3) // contour separete
2744                 {
2745                         sizeContourGroup=lstManConModExp.size();
2746                 } else {  // contour AND OR XOR
2747                         sizeContourGroup=1;
2748                 }
2749
2750                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2751                         lstManConModTmp.clear();
2752                         if (typeContourGroup==3) // contour separete
2753                         {
2754                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2755                         } else {  // contour AND OR XOR
2756                                 lstManConModTmp = lstManConModExp;
2757                         }
2758
2759                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2760                         contourextractdata->CalculateImageResult(); // with actual Z
2761
2762                 } // for  iContourGroup
2763         } // for z
2764
2765         (*value) = contourextractdata->GetVtkImageValueResult();
2766         (*mask) = contourextractdata->GetVtkImageMaskResult();
2767         delete contourextractdata;
2768 }
2769
2770 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2771 {
2772
2773         std::string temp = directory + "/" + namefile + "-Value.mhd";
2774
2775         wxString filename = crea::std2wx(temp);
2776         // LG
2777         //      filename.Printf(_T(temp.c_str()));
2778         //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2779         /*filename.Printf(_T("%s"),directory.c_str());
2780         filename.append(_T("\\"));
2781         filename.append(_T("%s"),namefile.c_str());
2782         filename.append(_T("-Value.mhd"));*/
2783
2784 // Image Value
2785         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2786         writerValueImage->SetInput( value );
2787         writerValueImage->SetFileName( (const char *)filename.mb_str() );
2788         writerValueImage->SetFileDimensionality( 3 );
2789         writerValueImage->Write( );
2790
2791 // Image Mask
2792         //              filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2793         temp = directory + "/" + namefile + "-Mask.mhd";
2794
2795         // LG 14/01/09 : using crea
2796         filename = crea::std2wx(temp);
2797         //      filename.Printf(_T(temp.c_str()));
2798
2799         /*filename.Printf(_T("%s"),directory.c_str());
2800         filename.append(_T("\\"));
2801         filename.append(_T("%s"),namefile.c_str());
2802         filename.append(_T("-Mask.mhd"));*/
2803
2804         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2805         writerMaskImage->SetInput( mask );
2806         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2807         writerMaskImage->SetFileDimensionality( 3 );
2808         writerMaskImage->Write( );
2809
2810         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2811
2812 }
2813
2814
2815
2816 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2817         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2818                 _theViewPanel->setActualVertical( value);
2819         }
2820         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
2821                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2822         }
2823
2824         changeInstant();
2825 }
2826
2827 void wxContourMainFrame::onSnakePressed(){
2828         std::vector<double> vecX;
2829         std::vector<double> vecY;
2830         std::vector<double> vecZ;
2831         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2832
2833         if (vecX.size()!=0){
2834                 std::vector<int> tempVector;
2835                 _instantPanel->getInstant( tempVector );
2836                 int i,size=vecZ.size();
2837                 int actualSlice = tempVector[1];
2838                 for ( i=0 ; i<size ; i++ )
2839                 {
2840                         vecZ[i] = actualSlice;
2841                 } // for
2842
2843                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2844                 wxPanel* panel = new wxPanel(dialog,-1);
2845                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2846          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2847                 dialog->ShowModal();
2848         } // if
2849
2850 }
2851
2852 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2853         std::string filename = kernelManager->getCurrentFileName();
2854         if(filename.compare("")!=0){
2855                 saveFileWithContours(filename);
2856         }else{
2857                 onSave();
2858         }
2859 }
2860 void wxContourMainFrame::ShowToolsPanel(bool show){
2861         _pannew->Show(show);
2862 }
2863