1 /*# ---------------------------------------------------------------------
3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
9 # This software is governed by the CeCILL-B license under French law and
10 # abiding by the rules of distribution of free software. You can use,
11 # modify and/ or redistribute the software under the terms of the CeCILL-B
12 # license as circulated by CEA, CNRS and INRIA at the following URL
13 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
14 # or in the file LICENSE.txt.
16 # As a counterpart to the access to the source code and rights to copy,
17 # modify and redistribute granted by the license, users are provided only
18 # with a limited warranty and the software's author, the holder of the
19 # economic rights, and the successive licensors have only limited
22 # The fact that you are presently reading this means that you have had
23 # knowledge of the CeCILL-B license and that you accept its terms.
24 # ------------------------------------------------------------------------ */
26 //----------------------------------------------------------------------------------------------------------------
27 // Class definition include
28 //----------------------------------------------------------------------------------------------------------------
29 #include "wxContourMainFrame.h"
33 //----------------------------------------------------------------------------------------------------------------
35 //----------------------------------------------------------------------------------------------------------------
38 #include "NameWrapper.h"
39 #include "wx/artprov.h"
40 #include "ConceptDataWrap.h"
46 //----------------------------------------------------------------------------------------------------------------
47 // Class implementation
48 //----------------------------------------------------------------------------------------------------------------
49 /** @file wxContourMainFrame.cxx */
51 //------------------------------------------------------------------------------------------------------------
52 // Constructors & Destructors
53 //------------------------------------------------------------------------------------------------------------
55 wxContourMainFrame* wxContourMainFrame::instance=NULL;
56 char wxContourMainFrame::COPY = 'C';
58 wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
59 //: wxPanel(parent, id, title, pos, size, style)
60 //: wxWindow(parent, id, pos, size, style)
61 : wxPanel(parent, id, pos, size, style)
63 m_mgr.SetManagedWindow(this);
65 _creatingContoursActive = false;
67 // _modelManager = NULL;
69 // _buttonsBar = NULL;
71 // _drawToolsPanel = NULL;
72 // _operationsToolsPanel = NULL;
73 //_autoFormsPanel = NULL;
74 // _standardToolsPanel = NULL;
75 // _editionToolsPanel = NULL;
76 // _listViewPanel = NULL;
77 // _sceneManager = NULL;
78 //_actualInstant = NULL;
79 _numberOfVariablesStatistics= 6+1;
81 _refLineControl = NULL;
84 // _actorPresent = false;
86 // set up default notebook style
87 // m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
88 // m_notebook_theme = 0;
89 //wxContour_ActionCommandsID a;
91 _contourextractdata = NULL;
92 _viewMaskImage = NULL;
93 _viewMaskImagePanel = NULL;
94 _viewThresholdImage = NULL;
95 _viewThresholdImagePanel = NULL;
96 _viewColorLayerImagePanel = NULL;
97 _frameShowResultImages = NULL;
100 wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
101 : wxPanel(parent, id, pos, size, style)
103 m_mgr.SetManagedWindow(this);
105 _creatingContoursActive = false;
106 _theViewPanel = NULL;
107 _instantPanel = NULL;
108 _refLineControl = NULL;
109 _refLineModel = NULL;
111 // _actorPresent = false;
112 _viewMaskImage = NULL;
113 _viewMaskImagePanel = NULL;
114 _viewThresholdImage = NULL;
115 _viewThresholdImagePanel = NULL;
116 _viewColorLayerImagePanel = NULL;
117 // set up default notebook style
118 m_notebook_style = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
119 m_notebook_theme = 0;
120 //wxContour_ActionCommandsID a;
121 _numberOfVariablesStatistics= 7;
125 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
126 _performingOperation = new PerformingOperation();
127 if(images.size() > 0)
129 this->setVectImages(images);
131 _contourextractdata = NULL;
134 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
138 std::string str_home(getenv("USERPROFILE"));
139 #elif defined(__GNUC__)
140 std::string str_home(getenv("HOME"));
142 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
143 std::vector<std::string> conceptNameVect;
144 std::vector<int> conceptSizeVect;
145 notebook = this->createNotebook();
146 kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
147 _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
148 _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
149 //-------------------------------------------------------------
150 kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
151 _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
152 double val = _theViewPanel->getCurrentDeep();
153 _instantPanel->setConceptValue( "Axe Depth", (int)val );
154 //JCP _instantPanel->setConceptValue("time", num de imagenes);
155 ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
156 //*******************changeInstant();
157 _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
158 this->configurePanels( );
162 wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
166 instance=new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
171 std::vector<vtkImageData*> wxContourMainFrame::getVectImages()
173 return kernelManager->getVectImages();
176 wxContourMainFrame* wxContourMainFrame::getInstance()
181 void wxContourMainFrame::resetInstance()
186 wxContourMainFrame::~wxContourMainFrame()
188 delete _contourextractdata;
191 interfMainPanel::resetInstance();
192 delete kernelManager;
194 //_pannew->Destroy();
200 //El problema al cerrar la aplicacion puede estar asociado
201 //a que wxAUINotebook esta en la aplicacion
202 //principal (wxContourGUIExample)tambien
203 //EED???? delete _theViewPanel;
204 //EED???? delete _instantPanel;
205 //EED???? delete _buttonsBar;
206 //EED???? delete _actualInstant;
207 //EED???? delete _sceneManager;
211 //------------------------------------------------------------------------------------------------------------
212 // Creational and initialization methods using WxAui
213 //------------------------------------------------------------------------------------------------------------
215 wxAuiNotebook * wxContourMainFrame::createNotebook()
217 wxSize client_size = GetClientSize();
218 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
219 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
224 //------------------------------------------------------------------------------------------------------------
225 // Creational and initialization methods
226 //------------------------------------------------------------------------------------------------------------
227 bool wxContourMainFrame::configurePanels( )
229 bool configured = _theViewPanel!=NULL;
231 configured &= _theViewPanel!=NULL;
232 if( _theViewPanel!=NULL )
234 notebook->AddPage( _theViewPanel, wxT(" View ") );
239 notebook->AddPage( _instantPanel, wxT("Instant Page") );
242 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
244 SetMinSize(wxSize(300,300));
250 bool wxContourMainFrame::addNewPanel(wxPanel* panel)
252 bool configured = panel!=NULL;
253 configured &= panel!=NULL;
257 notebook->AddPage( panel, wxT(" Viewer "), true );
263 //------------------------------------------------------------------------------------------------------------
264 // Attributes getters and setters
265 //------------------------------------------------------------------------------------------------------------
269 void wxContourMainFrame :: setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel )
271 _instantPanel = theInstantChooserPanel;
274 // void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
276 // _buttonsBar = theButtonsBar;
279 // void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
281 // _gridPanel = theGridPanel;
284 // void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
286 // _drawToolsPanel = theDrawToolsPanel;
289 // void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
291 // _operationsToolsPanel = theOperationsToolsPanel;
294 // void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
296 // _autoFormsPanel = theAutoFormsPanel;
299 // void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
301 // _standardToolsPanel= theStandardToolsPanel;
304 // void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
306 // _editionToolsPanel = theEditionToolsPanel;
309 // void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
311 // _listViewPanel = theListViewPanel;
316 void wxContourMainFrame::onCreateContourSpline( ){
318 //JCP 20-10-08 Undo redo implementation
320 //JCP 20-10-08 Undo redo implementation
325 void wxContourMainFrame::onCreateContourRectangle( )
327 //JCP 20-10-08 Undo redo implementation
329 //JCP 20-10-08 Undo redo implementation
333 void wxContourMainFrame::onCreateContourCircle( )
335 //JCP 20-10-08 Undo redo implementation
337 //JCP 20-10-08 Undo redo implementation
341 void wxContourMainFrame::onCreateContourLine( )
343 //JCP 20-10-08 Undo redo implementation
345 //JCP 20-10-08 Undo redo implementation
349 // RaC 09-09 --------------------------------------
350 void wxContourMainFrame::onCreateContourPoints( )
352 //JCP 20-10-08 Undo redo implementation
354 //JCP 20-10-08 Undo redo implementation
357 // RaC 09-09 --------------------------------------
359 // RaC 10-09 --------------------------------------
360 void wxContourMainFrame::onCreateContourPolygon( )
362 //JCP 20-10-08 Undo redo implementation
364 //JCP 20-10-08 Undo redo implementation
367 // RaC 10-09 --------------------------------------
369 //------------------------------------------------------------------------------------------------------------
371 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
373 //Creating the manualBaseModel and including in the model
374 manualBaseModel * manModelContour = factoryManualContourModel(panel );
376 std::vector<int> instantVector;
377 _instantPanel->getInstant( instantVector );
378 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
380 /*std::vector<int> instantVector;
381 _instantPanel->getInstant( instantVector );
383 theName= _modelManager->createOutline( manModelContour, instantVector );*/
384 bool addedModel = theName.compare("") != 0;//??
388 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
389 _theViewPanel->getSpacing(spc);
390 //Adding the manualContourControler to interface objects structure
391 //Adding the manualViewContour to interface objects structure
392 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
393 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
397 void wxContourMainFrame::createContour( int typeContour )
399 //Creating the manualContourModel and including in the model
400 manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
401 std::vector<int> instantVector;
402 _instantPanel->getInstant( instantVector );
404 std::vector<int> tempVector;
405 getInstantVector( tempVector );
406 manModelContour->SetLabel2( std::to_string(tempVector[1]) );
408 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
409 /*std::vector<int> instantVector;
410 _instantPanel->getInstant( instantVector );
412 theName= _modelManager->createOutline( manModelContour, instantVector );*/
413 bool addedModel = theName.compare("") != 0;//??
416 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
417 _theViewPanel->getSpacing(spc);
418 //Adding the manualContourControler to interface objects structure
419 //Adding the manualViewContour to interface objects structure
420 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
421 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
425 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
427 manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
428 manualBaseModel *manModelContour=NULL;
429 manModelContour = manModelContourBullEye;
431 int iCrown,sizeCrowns,iSector,sizeSectors;
432 double radioA,radioB,ang,angDelta ;
433 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
434 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
436 sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
437 radioB = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
438 if (iCrown==sizeCrowns-1)
442 radioA = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
446 for ( iSector=0 ; iSector<sizeSectors ; iSector++ )
448 ang = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
449 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
450 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
453 } // if _panelBullEyeOptions
455 return manModelContour;
458 void wxContourMainFrame :: saveState()
460 std::string temp = kernelManager->saveState();
461 saveFileWithContours(temp);
464 void wxContourMainFrame::onDeleteContour()
466 //JCP 20-10-08 Undo redo implementation
468 //JCP 20-10-08 Undo redo implementation
470 std::vector<std::string> lstKeyNameToBeErase;
471 lstKeyNameToBeErase = _theViewPanel->getSceneManager()->getSelectedObjects();
472 deleteContours( lstKeyNameToBeErase );
474 int i,size=_sceneManager->getSelectedObjects().size();
477 std::string keyName = _sceneManager->getSelectedObjects()[i];
478 int ispartofstaticlist = this->_modelManager->IsPartOfStaticList( keyName );
479 if ( ispartofstaticlist>=0 )
481 std::vector<int> tempVector;
482 _instantPanel->getInstant( tempVector );
483 Instant instant(&tempVector);
484 this->_modelManager->ChangeContourOfList(keyName, &instant);
488 std::vector<std::string> lstKeyName;
489 std::vector<std::string> lstKeyNameActualSlice;
490 std::vector<std::string> lstKeyNameToBeErase;
492 lstKeyNameToBeErase = _sceneManager->getSelectedObjects();
493 lstKeyNameActualSlice = _sceneManager->GetlstContoursNameActualSlice();
494 int k,kSize=lstKeyNameToBeErase.size();
495 int j,jSize=lstKeyNameActualSlice.size();
497 for (k=0;k<kSize; k++)
500 for (j=0;j<jSize; j++)
502 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
509 lstKeyName.push_back( lstKeyNameToBeErase[k] );
513 deleteContours( lstKeyName );
517 void wxContourMainFrame :: deleteContours( std::vector<std::string> keyNamesVector )
519 int i,size=keyNamesVector.size();
522 deleteContour( keyNamesVector[i] );
526 void wxContourMainFrame :: deleteContour( std::string theKeyName )
529 manualContourModel * cModel;
530 manualViewBaseContour * cViewer;
531 manualContourBaseControler * cControler;
533 ContourWrap_ViewControl *conwrapviewControl = _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
534 cControler = conwrapviewControl->getControler();*/
537 bool isedit = _theViewPanel->isEditableCControler(theKeyName);
538 bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
540 if (isedit && ispartofstaticlst)
542 _theViewPanel->removeFromScene(theKeyName);
544 kernelManager->deleteCModel(theKeyName);
545 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
546 //cViewer = conwrapviewControl->getViewer();
547 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
548 //cControler* conwrapviewControl->getControler();
551 // delete cControler;
556 void wxContourMainFrame::onDeleteContoursActSlice()
558 //JCP 20-10-08 Undo redo implementation
560 //JCP 20-10-08 Undo redo implementation
562 std::vector<int> tempVector;
563 getInstantVector( tempVector );
564 deleteContours( getOutlinesName( tempVector[1] ) );
565 // deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
568 void wxContourMainFrame::onDeleteAllContours(){
569 //JCP 20-10-08 Undo redo implementation
573 void wxContourMainFrame::deleteAllContours(){
574 //JCP 20-10-08 Undo redo implementation
577 std::vector<int> tempVector;
578 _instantPanel->getInstant( tempVector );
580 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
581 // the values in GetStart and GetEnd will then not be initialize also.
582 // We use instead the values given when initializing the _deletepanel.
584 //int minZ = _mbarrangeDeleteAll->GetStart();
585 //int maxZ = _mbarrangeDeleteAll->GetEnd();
589 maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
593 _theViewPanel->getSceneManager()->removeSceneContours( );
594 _theViewPanel->getSceneManager()->removeAllOutlines();
595 kernelManager->removeAllOutlines();
598 if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
600 _theViewPanel->getSceneManager()->removeSceneContours( );
601 _modelManager->removeAllOutlines();
602 _theViewPanel->getSceneManager()->removeAllOutlines();
605 for ( z=minZ ; z<=maxZ ; z++)
608 Instant instant(&tempVector);
609 std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
611 sizeLstContourThings = lstContourThings.size();
612 for (ii=0 ; ii<sizeLstContourThings ; ii++)
614 ContourThing **contourthing = lstContourThings[ii];
615 deleteContour( (*contourthing)->getName() );
622 void wxContourMainFrame::setConceptValue( std::string name, int value )
624 _instantPanel->setConceptValue(name, value);
628 ConceptDataWrap* wxContourMainFrame::getLastConceptData()
630 return _instantPanel->getLastConceptData();
634 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
636 return _instantPanel->getIfConceptCheckedAt( name, pos );
641 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
644 vtkImageData * value;
645 this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
647 std::vector<int> nTypeView;
648 nTypeView.push_back(5);
649 nTypeView.push_back(1);
650 nTypeView.push_back(2);
651 nTypeView.push_back(0);
653 if (_frameShowResultImages==NULL)
655 // wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
656 _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
657 wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION | wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER );
659 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
660 m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
662 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
663 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
665 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
666 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
669 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
670 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
671 m_mgr_noteBookViewerResult->Update();
672 _frameShowResultImages->Show();
673 } // if _frameShowResultImages
679 void wxContourMainFrame::changeInstant()
681 std::vector<int> instantVect;
682 _instantPanel->getInstant( instantVect );
683 int actualSlice = instantVect[1];
684 kernelManager->setInstant(instantVect);
685 // Refresh Mask image
686 if(_viewMaskImage!=NULL)
688 _viewMaskImage->SetZ(actualSlice);
689 if (_viewMaskImagePanel->IsVisible()==true)
691 vtkImageData *mask, *value;
692 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
693 _viewMaskImage->onThreshold();
695 } // if _viewMaskImage
696 // Refresh Threshold image
697 if(_viewThresholdImage!=NULL)
699 _viewThresholdImage->SetZ(actualSlice);
700 if (_viewThresholdImagePanel->IsVisible()==true)
702 _viewThresholdImage->onThreshold();
704 } // if _viewThresholdImage
705 updateInstantOutlines();
706 updateInstantImageData();
712 void wxContourMainFrame::updateInstantOutlines()
714 _theViewPanel->removeSceneContours();
715 _theViewPanel->addNameWrapperToScene();
717 //for( int i=0; i<size; i++)
719 // _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
723 int wxContourMainFrame::getNamesWrappingSize()
725 return kernelManager->getNamesWrappingSize();
728 std::string wxContourMainFrame::getNameWrapping(int i)
730 return kernelManager->getNameWrapping(i);
733 void wxContourMainFrame::updateInstantImageData()
735 std::vector<int> inst;
736 _instantPanel->getInstant(inst);
738 vtkImageData* img = kernelManager->getImageAtInstant(inst);
741 _theViewPanel->changeImage(img);
744 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
745 _theViewPanel->setImageSlice(z);
749 void wxContourMainFrame::updateInstantAxes()
754 void wxContourMainFrame::onChangeDeep(int val){
755 _instantPanel->setConceptValue( "Axe Depth", (int)val );
760 void wxContourMainFrame::onCopy(){
761 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
762 std::vector<int> tempVector;
763 _instantPanel->getInstant( tempVector );
764 _performingOperation->reset();
765 _performingOperation->setStartCommand( COPY );
766 _performingOperation->setStartOperationInstantVector( tempVector );
767 _performingOperation->setKeyNamesOperationElems( currentSelection );
770 void wxContourMainFrame::onPaste()
772 char theStartCommand = _performingOperation->getStartCommand();
773 if ( theStartCommand == COPY )
775 //JCP 20-10-08 Undo redo implementation
777 //JCP 20-10-08 Undo redo implementation
778 std::vector<int> tempVector;
779 _instantPanel->getInstant( tempVector );
780 _performingOperation->setEndOperationInstantVector ( tempVector );
781 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
782 int i,size = elems.size();
783 for( i=0; i<size; i++ )
785 createCopyContourOf( elems[i], tempVector, i>0 );
790 void wxContourMainFrame::onUndo()
792 std::string filename;
793 if(kernelManager->onUndoSaveFile(filename)){
794 saveFileWithContours(filename);
796 if(kernelManager->onUndo(filename)){
800 void wxContourMainFrame::onRedo(){
801 std::string filename;
802 if(kernelManager->onRedo(filename)){
807 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
809 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
810 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
811 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
814 ///AD: 03-09 Copy the object and apply the given transformation
815 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
817 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
818 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
820 manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
821 manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
823 double pnt1X = refPoint1->GetX();
824 double pnt1Y = refPoint1->GetY();
825 // double pnt1Z = refPoint1->GetZ();
826 double pnt2X = refPoint2->GetX();
827 double pnt2Y = refPoint2->GetY();
828 // double pnt2Z = refPoint2->GetZ();
830 double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
831 vtkTransform *t = vtkTransform::New();
835 t->Translate(-pnt1X, -pnt1Y, 0);
839 t->Translate(pnt1X, pnt1Y, 0);
842 int i,size=manualModel->GetSizeLstPoints();
845 manualPoint * mp = manualModel->GetManualPoint(i);
851 t->TransformPoint( vecIn, vecOut );
852 mp->SetPointX( vecOut[0] );
853 mp->SetPointY( vecOut[1] );
854 mp->SetPointZ( vecOut[2] );
857 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
860 void wxContourMainFrame ::loadState(std::string filename)
863 onLoadContours(filename,false);
866 void wxContourMainFrame::onLoad()
868 std::string fileNameContourROI = GetFileLocation();
869 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
870 if(GetFileLocation().empty())
872 //------------------------------------------------------------------------------------------------------------
873 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
874 #if wxMAJOR_VERSION <= 2
875 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
877 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
879 if (dialog.ShowModal() == wxID_OK)
881 fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
884 onLoadContours(fileNameContourROI,true);
887 void wxContourMainFrame::SetZForAllContours(int pz)
890 std::vector< std::string > lstNameThings;
891 int i,sizeLstNameThings;
892 int ii,sizeLstPoints;
893 lstNameThings = kernelManager->GetLstNameThings();
894 sizeLstNameThings = lstNameThings.size();
895 for (i=0 ; i<sizeLstNameThings ; i++)
897 printf("EED wxContourMainFrame::SetZForAllContours contour=%d \n", i );
898 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
899 sizeLstPoints = manualModel->GetSizeLstPoints();
900 for (ii=0 ; ii<sizeLstPoints ; ii++)
902 manualModel->GetManualPoint(ii)->SetPointZ(-900);
903 }// for ii list of points
904 }// for i list of Things
908 lstNameThings = kernelManager->GetLstNameThingsStatic();
909 sizeLstNameThings = lstNameThings.size();
910 for (i=0 ; i<sizeLstNameThings ; i++)
912 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
913 sizeLstPoints = manualModel->GetSizeLstPoints();
914 for (ii=0 ; ii<sizeLstPoints ; ii++)
916 manualModel->GetManualPoint(ii)->SetPointZ(-900);
917 }// for ii list of points
918 }// for i list of static things
921 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
925 FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
926 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
929 //------------------------------------------------------------------------------------------------------------
930 fileNameContourROI.append("data");
931 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
932 if(pFileData != NULL)
934 fscanf(pFileData,"%s",tmpD); // --CreaContour--
935 fscanf(pFileData,"%s",tmpD); // Version
936 fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
938 fscanf(pFileData,"%s",tmpD); // onePixelSize
939 fscanf(pFileData,"%s",tmpD); // #
940 _onePixelSize = atof(tmpD);
941 fscanf(pFileData,"%s",tmpD); // NumberOfContours
942 fscanf(pFileData,"%s",tmpD); // #
944 fscanf(pFile,"%s",tmp); // --CreaContour--
945 fscanf(pFile,"%s",tmp); // Version
946 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
947 std::string version(tmp);
949 _tmpReadFileTypeOfTransformation=-1;
950 if (version=="1.0.3")
952 readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
953 openContours(pFile,pFileData,false);
954 openContours(pFile,pFileData,true); //Load StaticContours
956 if (version=="1.0.2")
959 readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
960 openContours(pFile,pFileData,false);
961 readDimSpc(pFile,false); // DimSpc interactive OFF
962 openContours(pFile,pFileData,true); // Load StaticContours
963 SetZForAllContours(-900);
964 } else if (version=="1.0.1") { //AD:02-06-09
965 openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
966 openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
967 } else if (version=="1.0.0") { //AD:02-06-09
968 openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
971 if(pFileData != NULL)
976 _theViewPanel->getSceneManager()->removeSceneContours();
981 void wxContourMainFrame::onImport()
983 std::string filename, filenamecontours;
984 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
985 #if wxMAJOR_VERSION <= 2
986 wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
988 wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
990 if (dialog.ShowModal() == wxID_OK)
992 filename = dialog.GetPath().mb_str();
993 filenamecontours = kernelManager->parseOsirixFile(filename);
995 if(filenamecontours.compare("") != 0)
997 onLoadContours(filenamecontours,true);
1002 void wxContourMainFrame::onTest()
1004 std::string filename, filenamecontours;
1005 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1006 #if wxMAJOR_VERSION <= 2
1007 wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1009 wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
1011 if (dialog.ShowModal() == wxID_OK)
1013 filename = dialog.GetPath().mb_str();
1014 std::cout << "This is the filename: " << filename << std::endl;
1019 void wxContourMainFrame::onSave()
1021 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1022 if(GetFileLocation().empty())
1024 //------------------------------------------------------------------------------------------------------------
1025 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1026 #if wxMAJOR_VERSION <= 2
1027 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1029 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
1031 if (dialog.ShowModal() == wxID_OK)
1033 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1034 kernelManager->setCurrentFileName(fileNameContourROI);
1035 saveFileWithContours( fileNameContourROI );
1037 } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
1038 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1039 std::string fileNameContourROI = GetFileLocation();
1040 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1041 kernelManager->setCurrentFileName(fileNameContourROI);
1042 saveFileWithContours( fileNameContourROI);
1044 //------------------------------------------------------------------------------------------------------------
1048 void wxContourMainFrame::saveFileWithContours( std::string filename )
1051 FILE *pFile=fopen(filename.c_str(),"w+");
1053 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1054 filename.append("data");
1055 std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1056 FILE *pFileData=fopen(filename.c_str(),"w+");
1057 //------------------------------------------------------------------------------------------------------------
1059 std::vector< std::string > lstNameThings;
1060 int i,sizeLstNameThings;
1062 fprintf(pFile,"--CreaContour--\n");
1063 fprintf(pFile,"Version %s\n", "1.0.3" );
1065 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1066 fprintf(pFileData,"--CreaContour--\n");
1067 fprintf(pFileData,"Version %s\n", "1.0.3" );
1068 fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1070 //------------------------------------------------------------------------------------------------------------
1072 vtkImageData *image = _images[0];
1075 image->GetDimensions(dimRange);
1077 fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1080 image->GetSpacing(spaRange);
1082 fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1086 lstNameThings = kernelManager->GetLstNameThings();
1087 sizeLstNameThings = lstNameThings.size();
1088 fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1090 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1091 fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1092 //------------------------------------------------------------------------------------------------------------
1101 for (i=0 ; i<sizeLstNameThings ; i++)
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1107 // double sizeInPixel = manualModel ->GetPathSize( );
1108 double sizeInPixel = manualModel ->GetPathSize( spc );
1110 double realContourSize = sizeInPixel*_onePixelSize;
1111 manualModel ->SetRealSize(realContourSize);
1112 //------------------------------------------------------------------------------------------------------------
1114 //int size= kernelManager->GetLstNameThings().size();
1116 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1117 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1120 //-- Static Contours
1122 // fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1123 // fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1125 lstNameThings = kernelManager->GetLstNameThingsStatic();
1126 sizeLstNameThings = lstNameThings.size();
1127 fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1129 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1130 fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1131 //------------------------------------------------------------------------------------------------------------
1133 for (i=0 ; i<sizeLstNameThings ; i++)
1135 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1136 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1144 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1148 double imageSpac[3];
1149 vtkImageData *image = _images[0];
1150 image->GetDimensions(imageDim);
1151 image->GetSpacing(imageSpac);
1153 fscanf(pFile,"%s",tmp); // ImageDimensions
1154 fscanf(pFile,"%s",tmp); // X
1155 _tmpReadFileImageDim[0] = atoi(tmp);
1156 fscanf(pFile,"%s",tmp); // Y
1157 _tmpReadFileImageDim[1] = atoi(tmp);
1158 fscanf(pFile,"%s",tmp); // Z
1159 _tmpReadFileImageDim[2] = atoi(tmp);
1161 fscanf(pFile,"%s",tmp); // ImageSpacing
1162 fscanf(pFile,"%s",tmp); // X
1163 _tmpReadFileImageSpac[0] = atof(tmp);
1164 fscanf(pFile,"%s",tmp); // Y
1165 _tmpReadFileImageSpac[1] = atof(tmp);
1166 fscanf(pFile,"%s",tmp); // Z
1167 _tmpReadFileImageSpac[2] = atof(tmp);
1170 if (interactiveOption==true)
1172 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1173 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1175 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
1176 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1177 // wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1178 wxFlexGridSizer *dialSizer = new wxFlexGridSizer(1);
1180 wxString lstOptOperation[2];
1181 lstOptOperation[0]=_T("By Dimension");
1182 lstOptOperation[1]=_T("By Spacing");
1183 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,90), 2 , lstOptOperation, 2, wxRA_SPECIFY_COLS);
1185 dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the ")) , 0, wxGROW );
1186 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?")) , 0, wxGROW );
1187 dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW );
1188 dialSizer->Add(radioOpts,0,wxGROW);
1189 dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW );
1190 dialSizer->Add(buttonsSizer,0,wxGROW);
1191 dial->SetSizer(dialSizer, true);
1195 int _tmpReadFileTypeOfTransformation = -1;
1196 //EED bool transform = false;
1198 if (dial->GetReturnCode() == wxID_OK)
1200 _tmpReadFileTypeOfTransformation = radioOpts->GetSelection();
1204 } // if interactiveOption
1211 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1216 vtkImageData *image = _images[0];
1219 double imageSpac[3];
1220 image->GetDimensions(imageDim);
1221 image->GetSpacing(imageSpac);
1224 fscanf(pFile,"%s",tmp); // NumberOfContours
1225 fscanf(pFile,"%s",tmp); // ##
1226 int numberOfContours = atoi(tmp);
1228 std::vector<int> instantVector;
1229 int typeContourModel;
1230 manualBaseModel *manModelContour;
1234 if (compatible==true)
1237 for (i=0;i<numberOfContours;i++)
1239 instantVector.clear();
1240 fscanf(pFile,"%s",tmp); // Instant
1242 fscanf(pFile,"%s",tmp); // 1
1243 instantVector.push_back( atoi(tmp) );
1244 fscanf(pFile,"%s",tmp); // 2
1245 instantVector.push_back( atoi(tmp) );
1246 fscanf(pFile,"%s",tmp); // 3
1247 instantVector.push_back( atoi(tmp) );
1248 fscanf(pFile,"%s",tmp); // 4
1249 instantVector.push_back( atoi(tmp) );
1250 fscanf(pFile,"%s",tmp); // 5
1251 instantVector.push_back( atoi(tmp) );
1252 fscanf(pFile,"%s",tmp); // 6
1253 instantVector.push_back( atoi(tmp) );
1256 fscanf(pFile,"%s",tmp); // TypeContourModel
1257 fscanf(pFile,"%s",tmp); // ##
1258 typeContourModel = atoi(tmp);
1260 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
1261 manModelContour->Open(pFile);
1262 if(pFileData != NULL)
1264 manModelContour->OpenData(pFileData);
1267 fscanf(pFile,"%s",tmp); // TypeView
1268 fscanf(pFile,"%s",tmp); // ##
1269 typeView = atoi(tmp);
1271 std::string theName;
1272 theName = kernelManager->createOutline( manModelContour, instantVector );
1273 bool addedModel = theName.compare("") != 0;
1276 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1277 _theViewPanel->getSpacing(spc);
1278 //Adding the manualContourControler to interface objects structure
1279 //Adding the manualViewContour to interface objects structure
1280 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1281 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1284 if (staticContour) //StaticContours (will appear in all slices)
1286 Instant instant(&instantVector);
1287 kernelManager->changeContourOfManager( theName , &instant );
1290 }// for numberOfContours
1293 else if (compatible==false)
1298 for (i=0;i<numberOfContours;i++)
1300 instantVector.clear();
1301 fscanf(pFile,"%s",tmp); // Instant
1303 fscanf(pFile,"%s",tmp); // 1
1304 instantVector.push_back( atoi(tmp) );
1305 fscanf(pFile,"%s",tmp); // 2
1306 instantVector.push_back( atoi(tmp) );
1307 fscanf(pFile,"%s",tmp); // 3
1308 instantVector.push_back( atoi(tmp) );
1309 fscanf(pFile,"%s",tmp); // 4
1310 instantVector.push_back( atoi(tmp) );
1311 fscanf(pFile,"%s",tmp); // 5
1312 instantVector.push_back( atoi(tmp) );
1313 fscanf(pFile,"%s",tmp); // 6
1314 instantVector.push_back( atoi(tmp) );
1316 fscanf(pFile,"%s",tmp); // TypeContourModel
1317 fscanf(pFile,"%s",tmp); // ##
1318 typeContourModel = atoi(tmp);
1320 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
1321 manModelContour->Open(pFile);
1322 if(pFileData != NULL)
1324 manModelContour->OpenData(pFileData);
1327 if (_tmpReadFileTypeOfTransformation==-1){
1329 } else if (_tmpReadFileTypeOfTransformation==0){
1330 double transX, transY;
1331 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];
1332 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];
1333 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1334 } else if (_tmpReadFileTypeOfTransformation==1) {
1335 double transX, transY;
1336 transX = (double) _tmpReadFileImageSpac[0]/imageDim[0];
1337 transY = (double) _tmpReadFileImageSpac[1]/imageDim[1];
1338 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1341 fscanf(pFile,"%s",tmp); // TypeView
1342 fscanf(pFile,"%s",tmp); // ##
1343 typeView = atoi(tmp);
1345 std::string theName;
1346 theName = kernelManager->createOutline( manModelContour, instantVector );
1347 bool addedModel = theName.compare("") != 0;
1350 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1351 _theViewPanel->getSpacing(spc);
1352 //Adding the manualContourControler to interface objects structure
1353 //Adding the manualViewContour to interface objects structure
1354 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1355 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1358 if (staticContour) //StaticContours (will appear in all slices)
1360 Instant instant(&instantVector);
1361 kernelManager->changeContourOfManager( theName , &instant );
1363 }// for numberOfContours
1369 void wxContourMainFrame::RefreshInterface()
1372 _theViewPanel->RefreshInterface();
1373 //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1374 //wxvtk2dbaseview->Refresh();
1377 vtkImageData* wxContourMainFrame::getImageData()
1379 return _theViewPanel->getImageData();
1382 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1384 //JCP 20-10-08 Undo redo implementation
1386 //JCP 20-10-08 Undo redo implementation
1389 int x = _theViewPanel->GetX();
1390 int y = _theViewPanel->GetY();
1391 int z = _theViewPanel->GetZ();
1392 SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1396 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1398 int typeofcontour = 1;
1400 vtkImageData *imagedata = getImageData();
1401 //Tipo de pixeles a utilizar internamente en ITK
1402 typedef float InternalPixelType;
1403 const unsigned int Dimension = 2;
1404 typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
1405 //Tipo de pixeles de salida 1
1406 typedef unsigned char OutputPixelType;
1407 typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1408 //Tipo de pixeles de salida 2
1409 typedef unsigned short OutputPixelType2;
1410 typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1411 //DefiniciÛn del thresholder
1412 typedef itk::BinaryThresholdImageFilter<
1414 OutputImageType > ThresholdingFilterType;
1415 //DefiniciÛn del primer filtro de conversiÛn de pixeles
1416 typedef itk::CastImageFilter<
1417 OutputImageType, OutputImageType2 > CastFilterType;
1418 //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1419 typedef itk::CastImageFilter<
1420 OutputImageType2, InternalImageType > CastFilterType2;
1421 //Tercer tipo de conversiÛn
1422 typedef itk::RescaleIntensityImageFilter<
1424 OutputImageType > CastFilterType3;
1425 //Cuarto tipo de conversiÛn
1426 typedef itk::RescaleIntensityImageFilter<
1428 OutputImageType > CastFilterType4;
1429 ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1430 thresholder->SetLowerThreshold( 0.0 );
1431 thresholder->SetUpperThreshold( 128 );
1432 thresholder->SetOutsideValue( 255 );
1433 thresholder->SetInsideValue( 0 );
1434 //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1435 typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1436 typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1437 //EED10JUIN2011 typedef itk::ImageFileWriter< OutputImageType > WriterType;
1438 ConnectorType::Pointer connector = ConnectorType::New();
1439 ConnectorType2::Pointer connector2 = ConnectorType2::New();
1440 CastFilterType::Pointer filter = CastFilterType::New();
1441 CastFilterType2::Pointer filter2 = CastFilterType2::New();
1442 connector->SetInput( imagedata );
1443 filter2->SetInput(connector->GetOutput());
1444 typedef itk::CurvatureAnisotropicDiffusionImageFilter<
1446 InternalImageType > SmoothingFilterType;
1447 SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1448 typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
1450 InternalImageType > GradientFilterType;
1451 typedef itk::SigmoidImageFilter<
1453 InternalImageType > SigmoidFilterType;
1454 GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
1455 SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1456 sigmoid->SetOutputMinimum( 0.0 );
1457 sigmoid->SetOutputMaximum( 255.0 );
1458 typedef itk::FastMarchingImageFilter<
1460 InternalImageType > FastMarchingFilterType;
1461 FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
1462 typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1463 InternalImageType > GeodesicActiveContourFilterType;
1464 GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1465 GeodesicActiveContourFilterType::New();
1466 typedef itk::ZeroCrossingImageFilter<
1468 InternalImageType > ZeroCrossingFilterType;
1469 ZeroCrossingFilterType::Pointer zeroCrossing =
1470 ZeroCrossingFilterType::New();
1471 const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1472 geodesicActiveContour->SetPropagationScaling( propagationScaling );
1473 geodesicActiveContour->SetCurvatureScaling( 1.0 );
1474 geodesicActiveContour->SetAdvectionScaling( 1.0 );
1475 geodesicActiveContour->SetMaximumRMSError( 0.02 );
1476 int it=atoi( crea::wx2std(iter).c_str() );
1477 geodesicActiveContour->SetNumberOfIterations( it );
1478 smoothing->SetInput( filter2->GetOutput() );
1479 gradientMagnitude->SetInput( smoothing->GetOutput() );
1480 sigmoid->SetInput( gradientMagnitude->GetOutput() );
1481 fastMarching->SetInput( sigmoid->GetOutput() );
1482 geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1483 geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1484 zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1485 //thresholder->SetInput( zeroCrossing->GetOutput() );
1486 thresholder->SetInput( geodesicActiveContour->GetOutput() );
1487 connector2->SetInput( thresholder->GetOutput() );
1488 smoothing->SetTimeStep( 0.125 );
1489 smoothing->SetNumberOfIterations( 5 );
1490 smoothing->SetConductanceParameter( 9.0 );
1491 const double sigma = atof( crea::wx2std(sigm).c_str() );
1492 gradientMagnitude->SetSigma( sigma );
1493 const double alpha = atof( crea::wx2std(alf).c_str() );
1494 const double beta = atof( crea::wx2std(bet).c_str() );
1495 sigmoid->SetAlpha( alpha );
1496 sigmoid->SetBeta( beta );
1497 typedef FastMarchingFilterType::NodeContainer NodeContainer;
1498 typedef FastMarchingFilterType::NodeType NodeType;
1499 NodeContainer::Pointer seeds = NodeContainer::New();
1500 InternalImageType::IndexType seedPosition;
1501 seedPosition[0] = x;
1502 seedPosition[1] = y;
1503 const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1505 const double seedValue = - initialDistance;
1506 node.SetValue( seedValue );
1507 node.SetIndex( seedPosition );
1508 seeds->Initialize();
1509 seeds->InsertElement( 0, node );
1510 fastMarching->SetTrialPoints( seeds );
1511 fastMarching->SetSpeedConstant( 1.0 );
1512 fastMarching->SetOutputSize( connector->GetOutput()->GetBufferedRegion().GetSize() );
1513 fastMarching->SetStoppingValue( 800 );
1516 // connector2->Update();
1517 vtkImageData *idata = NULL;
1518 idata = connector2->GetOutput();
1519 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1520 cntVTK->SetNumberOfContours( 1 );
1521 cntVTK->SetValue( 0, 255 );
1522 //EED 2017-01-01 Migration VTK7
1523 #if VTK_MAJOR_VERSION <= 5
1524 cntVTK->SetInput( idata );
1526 cntVTK->UpdateInformation();
1528 cntVTK->SetInputData( idata );
1530 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1531 //EED 2017-01-01 Migration VTK7
1532 #if VTK_MAJOR_VERSION <= 5
1533 cpd->SetInput( cntVTK->GetOutput( ) );
1535 cpd->UpdateInformation();
1537 cpd->SetInputData( cntVTK->GetOutput( ) );
1539 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1540 conn->SetExtractionModeToLargestRegion( );
1541 //EED 2017-01-01 Migration VTK7
1542 #if VTK_MAJOR_VERSION <= 5
1543 conn->SetInput( cpd->GetOutput( ) );
1545 conn->UpdateInformation();
1547 conn->SetInputData( cpd->GetOutput( ) );
1549 vtkStripper* vtkstripper = vtkStripper::New( );
1550 //EED 2017-01-01 Migration VTK7
1551 #if VTK_MAJOR_VERSION <= 5
1552 vtkstripper->SetInput( conn->GetOutput() );
1553 vtkstripper->Update();
1554 vtkstripper->UpdateInformation();
1556 vtkstripper->SetInputData( conn->GetOutput() );
1559 vtkPolyData* polyDataResult = cntVTK->GetOutput();
1560 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1562 //EED 2017-01-01 Migration VTK7
1563 #if VTK_MAJOR_VERSION <= 5
1564 polyDataResult->Update( );
1565 polyDataResult->UpdateInformation();
1572 //--Calculating control points
1573 std::vector<double> vecX;
1574 std::vector<double> vecY;
1575 std::vector<double> vecXo;
1576 std::vector<double> vecYo;
1577 std::vector<double>::iterator vecXoi;
1578 std::vector<double>::iterator vecYoi;
1579 std::vector<double> vecZ;
1580 std::vector<double> vecCtrlPointX;
1581 std::vector<double> vecCtrlPointY;
1582 std::vector<double> vecCtrlPointZ;
1586 int ii,size=polyDataResult->GetNumberOfPoints();
1588 myfile.open ("C:/Creatis/example2.txt");
1589 size=polyDataResult->GetNumberOfPoints();
1590 for (ii=0;ii<size;ii++)
1597 p = polyDataResult->GetPoint(ii);
1600 // if(fabs(yAct-y)>20)
1602 // if((xAct-x)>1 || (xAct-x)<-1)
1604 // vecX.push_back( p[0] );
1605 // vecY.push_back( p[1] );
1606 // myfile <<p[0]<<","<<p[1]<<"\n";
1607 // std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1608 // std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1609 // std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1610 // vecZ.push_back( 900 );
1614 // vecXo.push_back(p[0]);
1615 // vecYo.push_back(p[1]);
1621 vecXo.push_back(p[0]);
1622 vecYo.push_back(p[1]);
1624 vecX.push_back( p[0] );
1625 myfile <<p[0]<<","<<p[1]<<"\n";
1626 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1627 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1628 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1629 vecY.push_back( p[1] );
1631 vecZ.push_back( -900 );
1639 while(!vecXo.empty())
1641 vecX.push_back(vecXo.back());
1642 //std::cout<<" x Siguiente "<<vecXo.back();
1645 vecZ.push_back( -900 );
1647 while(!vecYo.empty())
1649 vecY.push_back(vecYo.back());
1654 // for(int l=0;l<vecX.size();l++)
1658 // vecXo.push_back(p[0]);
1659 // vecYo.push_back(p[1]);
1661 // if(vecXoi[l-1]==)
1667 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1668 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1673 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1674 } else if (method==1){
1675 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1676 } else if (method==2){
1677 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1678 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1680 //--Adding contour to the system
1682 std::vector<int> actualInstantVector;
1683 _instantPanel->getInstant( actualInstantVector );
1684 actualInstantVector[1]=z;
1686 int j,sizeCtrPt = vecCtrlPointX.size();
1688 manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1689 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1691 for (j=0 ; j<sizeCtrPt ; j++)
1693 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
1695 std::string theName;
1696 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1697 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1698 bool addedModel = theName.compare("") != 0;
1701 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1702 _theViewPanel->getSpacing(spc);
1703 //Adding the manualContourControler to interface objects structure
1704 //Adding the manualViewContour to interface objects structure
1705 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1706 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1707 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1711 } catch( itk::ExceptionObject & excep ) {
1712 std::cerr << "Exception caught !" << std::endl;
1713 std::cerr << excep << std::endl;
1718 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1720 //JCP 20-10-08 Undo redo implementation
1722 //JCP 20-10-08 Undo redo implementation
1725 int x = _theViewPanel->GetX();
1726 int y = _theViewPanel->GetY();
1727 int z = _theViewPanel->GetZ();
1728 SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1733 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1736 printf("EED wxContourMainFrame::SegmentationOneSlice Start=%d %d\n",sampling,method );
1737 printf("EED wxContourMainFrame::SegmentationOneSlice %d %d %d \n",x,y,z );
1739 int typeofcontour = 1;
1740 //--Extracting Contour
1741 vtkImageData *imagedata = getImageData();
1743 vtkImageReslice *imageReslice = vtkImageReslice::New();
1746 imagedata->GetSpacing(spc);
1751 //EED 2017-01-01 Migration VTK7
1752 #if VTK_MAJOR_VERSION <= 5
1753 imageReslice->SetInput( imagedata );
1755 imageReslice->SetInputData( imagedata );
1757 imageReslice->SetInformationInput(imagedata);
1758 imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1759 imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
1760 imageReslice->SetOutputDimensionality(2);
1761 imageReslice->SetInterpolationModeToLinear();
1763 //EED 2017-01-01 Migration VTK7
1764 #if VTK_MAJOR_VERSION <= 5
1767 imageReslice->Update();
1770 imagedata = imageReslice->GetOutput();
1771 //EED 2017-01-01 Migration VTK7
1772 #if VTK_MAJOR_VERSION <= 5
1773 imagedata->Update();
1774 imagedata->UpdateInformation();
1779 vtkContourFilter* cntVTK = vtkContourFilter::New( );
1780 //EED 2017-01-01 Migration VTK7
1781 #if VTK_MAJOR_VERSION <= 5
1782 cntVTK->SetInput( imagedata );
1784 cntVTK->SetInputData( imagedata );
1787 cntVTK->SetNumberOfContours( 1 );
1788 //cntVTK->SetValue( 0, vmin );
1789 // cntVTK->SetValue( 0, (range[1]*thr/100) );
1790 cntVTK->SetValue( 1, isovalue );
1791 // cntVTK->SetValue( 1, vmax );
1793 cntVTK->UpdateInformation();
1795 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1796 //EED 2017-01-01 Migration VTK7
1797 #if VTK_MAJOR_VERSION <= 5
1798 cpd->SetInput( cntVTK->GetOutput( ) );
1800 cpd->SetInputData( cntVTK->GetOutput( ) );
1802 cpd->ConvertLinesToPointsOff( );
1804 cpd->UpdateInformation();
1806 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1808 // conn->SetExtractionModeToPointSeededRegions();
1809 // conn->SetExtractionModeToCellSeededRegions();
1810 // conn->SetExtractionModeToSpecifiedRegions();
1811 // conn->SetExtractionModeToLargestRegion();
1812 // conn->SetExtractionModeToAllRegions();
1814 conn->SetExtractionModeToClosestPointRegion();
1816 //conn->SetMaxRecursionDepth( 3000 );
1818 //EED 2017-01-01 Migration VTK7
1819 #if VTK_MAJOR_VERSION <= 5
1820 conn->SetInput( cpd->GetOutput( ) );
1822 conn->SetInputData( cpd->GetOutput( ) );
1825 conn->SetClosestPoint( x, y, 0 );
1827 conn->UpdateInformation();
1829 vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1830 //EED 2017-01-01 Migration VTK7
1831 #if VTK_MAJOR_VERSION <= 5
1832 cpd2->SetInput( conn->GetOutput( ) );
1834 cpd2->SetInputData( conn->GetOutput( ) );
1837 cpd2->UpdateInformation();
1839 vtkStripper* vtkstripper = vtkStripper::New( );
1840 vtkstripper->SetJoinContiguousSegments(true);
1841 vtkstripper->SetMaximumLength(20000);
1842 //EED 2017-01-01 Migration VTK7
1843 #if VTK_MAJOR_VERSION <= 5
1844 vtkstripper->SetInput( cpd2->GetOutput() );
1846 vtkstripper->SetInputData( cpd2->GetOutput() );
1847 // vtkstripper->SetInputData( cntVTK->GetOutput() );
1850 vtkstripper->Update();
1851 vtkstripper->UpdateInformation();
1854 vtkPolyData* polyDataResult = vtkstripper->GetOutput();
1856 //EED 2017-01-01 Migration VTK7
1857 #if VTK_MAJOR_VERSION <= 5
1858 polyDataResult->Update( );
1859 polyDataResult->UpdateInformation();
1866 myfile.open ("c:/temp/example.txt");
1868 polyDataResult->Print(myfile);
1869 myfile << "-------------------------------------\n";
1870 polyDataResult->GetLines()->Print(myfile);
1878 //--Calculating control points
1879 std::vector<double> vecX;
1880 std::vector<double> vecY;
1881 std::vector<double> vecZ;
1882 std::vector<double> vecCtrlPointX;
1883 std::vector<double> vecCtrlPointY;
1884 std::vector<double> vecCtrlPointZ;
1886 printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
1888 int numberOfPointsInCell;
1889 int numberOfcells=polyDataResult->GetNumberOfCells();
1890 for (int jj=0; jj<numberOfcells ; jj++)
1892 vtkCell* vtkcell = polyDataResult->GetCell( jj );
1893 numberOfPointsInCell=vtkcell->GetNumberOfPoints();
1894 printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d points=%d \n",jj,numberOfPointsInCell );
1897 printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
1899 polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
1902 if (polyDataResult->GetNumberOfCells()>0)
1905 printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
1906 vtkCell* vtkcell = polyDataResult->GetCell( 0 );
1907 printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
1908 // int ii,size=polyDataResult->GetNumberOfPoints();
1909 int ii,size=vtkcell->GetNumberOfPoints();
1910 printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
1912 for (ii=0;ii<size;ii++)
1914 // id = polyDataResult->GetLines()->GetData()->GetValue(ii);
1915 // p = polyDataResult->GetPoint(id);
1916 p = vtkcell->GetPoints()->GetPoint(ii);
1918 printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d px=%f py=%f\n",ii,id, p[0],p[1]);
1921 vecX.push_back( p[0] );
1922 vecY.push_back( p[1] );
1924 vecZ.push_back( -900 );
1925 // vecZ.push_back( p[2] );
1928 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1929 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1932 /*if (methodRadiobox->GetSelection()==0){
1933 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1935 if (methodRadiobox->GetSelection()==1){
1936 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1938 if (methodRadiobox->GetSelection()==2){
1939 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1940 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1945 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1946 } else if (method==1){
1947 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1948 } else if (method==2){
1949 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1950 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1953 //--Adding contour to the system
1954 std::vector<int> actualInstantVector;
1955 _instantPanel->getInstant( actualInstantVector );
1956 actualInstantVector[1]=z;
1958 int j,sizeCtrPt = vecCtrlPointX.size();
1959 manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1960 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
1961 manModelContour->SetLabel2( std::to_string(z) );
1964 for (j=0 ; j<sizeCtrPt ; j++)
1966 manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
1968 std::string theName;
1969 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1970 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1971 bool addedModel = theName.compare("") != 0;
1974 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1975 _theViewPanel->getSpacing(spc);
1976 //Adding the manualContourControler to interface objects structure
1977 //Adding the manualViewContour to interface objects structure
1978 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1979 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1980 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1983 } // if NumberOfCells > 0
1985 printf("EED wxContourMainFrame::SegmentationOneSlice End\n");
1988 int wxContourMainFrame::GetImageDataSizeZ()
1990 return _theViewPanel->GetImageDataSizeZ();
1993 void wxContourMainFrame::GetImageDataRange(double *range)
1995 _theViewPanel->GetImageDataRange(range);
1998 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
2000 //JCP 20-10-08 Undo redo implementation
2002 //JCP 20-10-08 Undo redo implementation
2005 int x = _theViewPanel->GetX();
2006 int y = _theViewPanel->GetY();
2010 double totalZ = maxZ-minZ+1;
2011 for( z=minZ ; z<=maxZ ; z++ )
2013 porcent = 100.0* (z-minZ)/totalZ;
2014 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2015 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2016 //_staticTextSegmentation->SetLabel(tmpString);
2017 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2019 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T(" "));
2024 //Creates a reference line to be used as the axis of the mirroring
2025 void wxContourMainFrame::referenceLine()
2027 if (_refLineControl==NULL)
2032 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2033 vtkimagedata->GetSpacing(spc);
2035 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2037 _refLineControl = new manualLineControler();
2038 _refLineModel = new manualContourModelLine();
2039 _refLineView = new manualViewLine();
2040 _refLineView->SetModel( _refLineModel );
2041 _refLineView->SetWxVtkBaseView( viewer2D );
2042 _refLineView->SetRange( 2 );
2043 _refLineView->SetZ( 1200 );
2045 _refLineView->SetSpacing(spc);
2047 _refLineView->SetColorNormalContour(0, 0, 1);
2048 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2049 _refLineView->SetWidthLine(4);
2051 _refLineControl->SetModelView( _refLineModel , _refLineView );
2052 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2053 style->AddInteractorStyleMaracas( _refLineControl );
2054 _refLineModel->SetCloseContour(false);
2055 _refLineControl->CreateNewManualContour();
2057 //AD: Inicializar el mirroring con una linea ya pintada
2059 double z = _refLineControl->GetZ();
2062 image->GetDimensions(imageDim);
2063 double x = (double) imageDim[0]/2;
2064 double y1 = (double) (imageDim[1]/2)+15;
2065 double y2 = (double) (imageDim[1]/2)-15;
2067 _refLineControl->AddPoint(x,y1,z);
2068 _refLineControl->AddPoint(x,y2,z);
2069 _refLineControl->SetCompleteCreation(true);
2071 _refLineModel->AddPoint(x,y1,z);
2072 _refLineModel->AddPoint(x,y2,z);
2073 _refLineModel->UpdateSpline();
2075 _refLineView->UpdateViewPoint(0);
2076 _refLineView->UpdateViewPoint(1);
2079 _refLineControl->SetActive(true);
2080 _refLineView->RefreshContour();
2084 //Hides the referenceLine
2085 void wxContourMainFrame::refLineHide()
2087 if (_refLineControl!=NULL)
2089 if (_refLineControl->GetActive())
2091 _refLineView->RemoveCompleteContourActor();
2092 _refLineControl->SetEditable(false);
2093 _refLineControl->SetActive(false);
2100 //Shows the referenceLine
2101 void wxContourMainFrame::refLineShow()
2103 if (_refLineControl!=NULL)
2105 if (_refLineControl->GetActive()==false)
2107 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2109 _refLineView->SetModel( _refLineModel );
2110 _refLineView->SetWxVtkBaseView( viewer2D );
2111 _refLineView->SetRange( 2 );
2112 _refLineView->SetZ( 1200 );
2114 _refLineControl->SetModelView( _refLineModel , _refLineView );
2115 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2116 style->AddInteractorStyleMaracas( _refLineControl );
2117 _refLineControl->CreateNewManualContour();
2118 _refLineControl->SetActive(true);
2119 _refLineView->RefreshContour();
2126 void wxContourMainFrame::refLineChangeWidth(int width)
2128 _refLineView->SetWidthLine(width);
2129 _refLineView->RefreshContour();
2135 void wxContourMainFrame::onMirror()
2138 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2139 std::vector<std::string> filterCurrentSelection;
2141 std::vector<int> tempVector;
2142 _instantPanel->getInstant( tempVector );
2143 _performingOperation->reset();
2144 _performingOperation->setStartCommand( COPY );
2145 _performingOperation->setStartOperationInstantVector( tempVector );
2146 _performingOperation->setKeyNamesOperationElems( currentSelection );
2148 char theStartCommand = _performingOperation->getStartCommand();
2149 if ( theStartCommand == COPY )
2151 //JCP 20-10-08 Undo redo implementation
2153 //JCP 20-10-08 Undo redo implementation
2154 std::vector<int> tempVector;
2155 _instantPanel->getInstant( tempVector );
2156 _performingOperation->setEndOperationInstantVector ( tempVector );
2157 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2158 int i,size = elems.size();
2159 for( i=0; i<size; i++ )
2161 createMirrorContourOf( elems[i], tempVector, i>0 );
2165 //deleteContour( _refName );
2170 void wxContourMainFrame::showAxis(bool show)
2172 _theViewPanel->SetVisibleAxis(show);
2173 _theViewPanel->Refresh();
2177 void wxContourMainFrame::onRigidPressed(){
2178 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2179 int elementsSelected = currentSelection.size();
2181 if ( elementsSelected >= 1 ){
2182 //JCP 20-10-08 Undo redo implementation
2184 //JCP 20-10-08 Undo redo implementation
2186 std::vector<int> tempVector;
2187 _instantPanel->getInstant( tempVector );
2188 Instant instant(&tempVector);
2190 int i , size=currentSelection.size();
2191 for ( i=0 ; i<size ; i++ )
2193 kernelManager->changeContourOfManager(currentSelection[i], &instant);
2198 void wxContourMainFrame::onWidthOfContour(double width){
2200 _theViewPanel->removeSceneContours();
2201 _theViewPanel->SetWidthContour(width);
2203 //_theViewPanel->getSceneManager()->SetWidthContour( width );
2208 int wxContourMainFrame::getColorWindow()
2212 vtkImageData * img = getImageData();
2213 img->GetScalarRange(range);
2215 std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2217 return (int)range[1];
2219 return _theViewPanel->getColorWindow();
2222 int wxContourMainFrame::getWindowLevel()
2226 vtkImageData * img = getImageData();
2227 img->GetScalarRange(range);
2229 std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2231 return (int)range[1];
2233 return _theViewPanel->getWindowLevel();
2236 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
2238 _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2243 void wxContourMainFrame::onInterpolation(bool interpolate)
2245 _theViewPanel->onInterpolation(interpolate);
2249 void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
2251 _theViewPanel->onBeforeAfterContour(before,after);
2255 void wxContourMainFrame::onJumpSlice(int step, int shift)
2257 std::vector<int> tempVector;
2258 _instantPanel->getInstant( tempVector );
2260 int pos = tempVector[1];
2261 int maxZ = interfMainPanel::getInstance()->GetImageDataSizeZ();
2262 pos=(pos/ss)*ss+step+shift;
2263 if ((pos>=0) && (pos<maxZ))
2266 _instantPanel->setInstant( tempVector );
2271 void wxContourMainFrame::onShowTextContour(bool show)
2273 _theViewPanel->onShowTextContour(show);
2277 void wxContourMainFrame::onChangeInstant(std::string name,int actual)
2279 _instantPanel->setConceptValue( name, actual );
2282 void wxContourMainFrame::resetAppend()
2284 kernelManager->resetAppend();
2287 void wxContourMainFrame::onSpreadAdd()
2289 std::vector<double> vecX;
2290 std::vector<double> vecY;
2291 std::vector<double> vecZ;
2292 _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2293 std::vector<int> tempVector;
2294 _instantPanel->getInstant( tempVector );
2295 std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2296 interfMainPanel::getInstance()->appendStringSpread(val);
2300 void wxContourMainFrame::onSpreadAddAll()
2303 std::vector<int> tempVector;
2304 _instantPanel->getInstant( tempVector );
2307 maxZ = interfMainPanel::getInstance()->GetImageDataSizeZ();
2309 int sizeLstContourThings;
2310 for ( z=minZ ; z<=maxZ ; z++ )
2313 Instant instant(&tempVector);
2314 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2315 sizeLstContourThings = lstContourThings.size();
2316 if (sizeLstContourThings>=1)
2318 std::vector<double> vecX;
2319 std::vector<double> vecY;
2320 std::vector<double> vecZ;
2321 ContourThing **contourthing = lstContourThings[0];
2322 manualBaseModel *cModel = (*contourthing)->getModel();
2323 int i,size = cModel->GetNumberOfPointsSpline();
2325 for (i=0; i<size; i++)
2327 cModel->GetSpline_i_Point(i, &x, &y, &z);
2332 std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2333 interfMainPanel::getInstance()->appendStringSpread(val);
2334 }// if sizeLstContourThings
2339 void wxContourMainFrame::onSpreadGo(int type)
2341 //JCP 20-10-08 Undo redo implementation
2343 //JCP 20-10-08 Undo redo implementation
2345 std::vector<double> vecCtrlPointX;
2346 std::vector<double> vecCtrlPointY;
2347 std::vector<double> vecCtrlPointZ;
2351 std::vector<int> tempVector;
2352 _instantPanel->getInstant( tempVector );
2355 kernelManager->getMaxMinZ(&minZ,&maxZ);
2356 //JSTG_16-07-08_----------------------------------------------------------------
2357 //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2358 kernelManager->CalculeSplinePropagation();
2360 double totalZ = maxZ-minZ+1;
2363 //--------------------------------------------------------------------
2364 for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2366 porcent = 100.0* (z-minZ)/totalZ;
2367 int numero = (int)(z-minZ+1)/(int)totalZ;
2368 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2370 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2372 int typeofcontour = 1;
2373 std::string theName;
2374 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2376 if( manModelContour!=NULL ){
2377 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2378 this->_theViewPanel->getSpacing(spc);
2379 //Adding the manualContourControler to interface objects structure
2380 //Adding the manualViewContour to interface objects structure
2381 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2382 _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2387 int numero = (int)(z-minZ+1)/(int)totalZ;
2388 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2390 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2392 //RefreshInterface();
2395 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
2397 _instantPanel->getInstant( tempVector );
2400 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
2402 std::vector<int> tempVector;
2403 _instantPanel->getInstant(tempVector);
2404 //Asignation of slide number should be different ex by name
2405 tempVector[1]=slide;
2406 return kernelManager->getOutlinesNameAtInstant(tempVector);
2410 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2412 _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2416 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2419 wxString tempString;
2420 int maxContourGroup = 0;
2422 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2424 std::vector<manualBaseModel*> lstManConMod;
2425 std::vector<manualBaseModel*> lstManConModTmp;
2426 std::vector<manualBaseModel*> lstManConModExp;
2427 std::vector<double> pLstValue;
2428 std::vector<double> pLstValuePosX;
2429 std::vector<double> pLstValuePosY;
2430 std::vector<double> pLstValuePosZ;
2433 int resultGrayRangeCount;
2436 double resultAverage;
2437 double resultStandardeviation;
2439 std::vector<int> tempVector;
2440 _instantPanel->getInstant( tempVector );
2443 int ii,sizeLstContourThings;
2452 if (selection==0 ) // actual slice
2454 int actualSlice = tempVector[1];
2457 } else { // slice range
2463 totalZ = maxZ-minZ+1;
2465 _contourextractdata->InitVolumeStatistics();
2468 for ( z=minZ ; z<=maxZ ; z++ )
2471 porcent = 100.0* (z-minZ)/totalZ;
2472 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2474 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2475 //_staticTextInformation->SetLabel(tmpString);
2477 //Extraction data from contours of each slice
2478 _contourextractdata->SetZtoBeAnalys(z);
2481 Instant instant(&tempVector);
2482 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2483 sizeLstContourThings = lstContourThings.size();
2485 lstManConMod.clear();
2486 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2488 ContourThing **contourthing = lstContourThings[ii];
2489 lstManConMod.push_back( (*contourthing)->getModel() );
2492 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2494 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2495 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2496 //_grid->SetRowLabelValue(z, tempString );
2498 int iContourGroup,sizeContourGroup;
2499 if (typeContourGroup==3) // contour separete
2501 sizeContourGroup=lstManConModExp.size();
2502 if ( maxContourGroup<sizeContourGroup )
2504 maxContourGroup=sizeContourGroup;
2506 } else { // contour AND OR XOR
2513 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2514 lstManConModTmp.clear();
2518 if (typeContourGroup==3) // contour separete
2520 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2521 } else { // contour AND OR XOR
2522 lstManConModTmp = lstManConModExp;
2525 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2526 _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2529 pLstValuePosX.clear();
2530 pLstValuePosY.clear();
2531 pLstValuePosZ.clear();
2535 _contourextractdata->GetValuesInsideCrown( &numberOfPixels,
2541 resultSize=numberOfPixels;
2542 // Statistics of each slice.
2543 _contourextractdata->Statistics( &pLstValue,
2546 &resultGrayRangeCount,
2551 &resultStandardeviation);
2553 if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1) )
2555 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2558 tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2560 tempString.Printf(_T("%d"),numberOfPixels);
2562 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2564 tempString.Printf(_T("%d"),resultGrayRangeCount);
2565 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2567 tempString.Printf(_T("%f"),resultMin);
2568 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2570 tempString.Printf(_T("%f"),resultMax);
2571 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2573 tempString.Printf(_T("%f"),resultAverage);
2574 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2576 tempString.Printf(_T("%f"),resultStandardeviation);
2577 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2580 } // for iContourGroup
2583 // Print Volume Statistics
2586 int vol_rCountRange;
2588 double vol_minValue;
2589 double vol_maxValue;
2591 double vol_standardeviation;
2593 if (selection!=0 ) // actual slice
2596 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2597 &vol_minValue, &vol_maxValue,
2598 &vol_average, &vol_standardeviation);
2600 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2602 tempString.Printf(_T("%d"),vol_rsize);
2603 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2605 tempString.Printf(_T("%d"),vol_rCountRange);
2606 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2608 tempString.Printf(_T("%f"),vol_minValue);
2609 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2611 tempString.Printf(_T("%f"),vol_maxValue);
2612 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2614 tempString.Printf(_T("%f"),vol_average);
2615 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2617 tempString.Printf(_T("%f"),vol_standardeviation);
2618 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2620 //-----------------------------------------
2623 wxString tmpTitleString;
2625 for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2627 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2628 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2629 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2631 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2632 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2633 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2634 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2635 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2636 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2637 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2639 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2643 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2644 int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2648 SaveValuesXYZ( directory , namefile, typeContourGroup );
2653 vtkImageData * mask;
2654 vtkImageData * value;
2655 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2656 this->SaveImageResult( directory , namefile, mask, value);
2661 std::ostringstream name;
2662 name << filename << ".xls";
2665 FILE *pFile=fopen(name.str().c_str(),"w+");
2671 // int sizeZ = _theViewPanel->GetImageDataSizeZ();
2672 // int maxY=sizeZ+2;
2674 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2677 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2678 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2680 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2681 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2683 fprintf(pFile,"\n\n" );
2687 if (selection==0 ) // actual slice
2689 std::vector<int> tempVector;
2690 _instantPanel->getInstant( tempVector );
2691 int actualSlice = tempVector[1];
2697 for ( j=minZ; j<=maxZ ; j++)
2699 fprintf(pFile,"%d\t" , j );
2700 for (i=0 ; i<maxX ; i++){
2701 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2702 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2704 fprintf(pFile,"\n" );
2708 // Total of stadistics.....
2711 fprintf(pFile,"\n Total:\t" );
2712 for (i=0 ; i<maxX ; i++){
2713 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2714 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2716 fprintf(pFile,"\n" );
2724 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2728 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2729 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2731 std::vector<manualBaseModel*> lstManConMod;
2732 std::vector<manualBaseModel*> lstManConModTmp;
2733 std::vector<manualBaseModel*> lstManConModExp;
2734 std::vector<double> pLstValue;
2735 std::vector<double> pLstValuePosX;
2736 std::vector<double> pLstValuePosY;
2737 std::vector<double> pLstValuePosZ;
2739 std::vector<int> tempVector;
2740 _instantPanel->getInstant( tempVector );
2742 int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2744 int ii,sizeLstContourThings;
2751 minZ = 0;// _mbarrange->GetStart();
2752 maxZ = sizeZ;//_mbarrange->GetEnd();
2753 totalZ = maxZ-minZ+1;
2757 for ( z=0 ; z<sizeZ ; z++)
2760 porcent = 100.0* (z-minZ)/totalZ;
2762 tmpString.Printf(_T("Saving Values"));
2763 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2764 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2765 //_staticTextInformation->SetLabel(tmpString);
2768 //Extraction data from contours of each slice
2769 _contourextractdata->SetZtoBeAnalys( z);
2772 Instant instant(&tempVector);
2773 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2774 sizeLstContourThings = lstContourThings.size();
2776 lstManConMod.clear();
2777 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2779 ContourThing **contourthing = lstContourThings[ii];
2780 lstManConMod.push_back( (*contourthing)->getModel() );
2782 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2787 int iContourGroup,sizeContourGroup;
2788 if (typeContourGroup==3) // contour separete
2790 sizeContourGroup=lstManConModExp.size();
2791 } else { // contour AND OR XOR
2795 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2796 lstManConModTmp.clear();
2797 if (typeContourGroup==3) // contour separete
2799 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2800 } else { // contour AND OR XOR
2801 lstManConModTmp = lstManConModExp;
2804 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2807 pLstValuePosX.clear();
2808 pLstValuePosY.clear();
2809 pLstValuePosZ.clear();
2811 _contourextractdata->GetValuesInsideCrown( &numberOfPixels,
2817 std::string temp = directory + "/" + namefile + "-slice";
2818 temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2819 temp = temp + ".txt";
2821 // LG 14/01/09 : using crea
2822 wxString filename = crea::std2wx(temp);
2823 /*filename.Printf(_T("%s"),directory.c_str());
2824 filename.append(_T("\\"));
2825 filename.append(_T("%s"),namefile.c_str());
2826 filename.append(_T("-slice"));
2827 filename.append(_T("%d"),z);
2828 filename.append(_T("-cont"));
2829 filename.append(_T("%d"),iContourGroup);
2830 filename.append(_T(".txt"));*/
2831 // filename.Printf(temp.c_str());
2835 FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2836 fprintf(pFile,"value \t x \t y \t z\n" );
2837 int iLstValue,sizeLstValue=pLstValue.size();
2838 for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2840 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2843 } // for iContourGroup
2845 interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2846 //_staticTextInformation->SetLabel( _T("") );
2850 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2853 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2854 if (typeContourGroup==3)
2858 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2860 std::vector<manualBaseModel*> lstManConMod;
2861 std::vector<manualBaseModel*> lstManConModTmp;
2862 std::vector<manualBaseModel*> lstManConModExp;
2864 std::vector<int> tempVector;
2865 _instantPanel->getInstant( tempVector );
2867 vtkImageData *imagedata = _theViewPanel->getImageData();
2869 imagedata->GetExtent(ext);
2870 int sizeZimage = ext[5]-ext[4]+1;
2872 int ii,sizeLstContourThings;
2880 if (selection==0 ) // actual slice
2882 int actualSlice = tempVector[1];
2890 // cleanning image before range
2891 for (z=0; z<minZ; z++){
2892 _contourextractdata->ResetImageResult(z);
2894 // cleanning image after range
2895 for (z=maxZ+1; z<sizeZimage; z++){
2896 _contourextractdata->ResetImageResult(z);
2901 for ( z=minZ ; z<=maxZ ; z++)
2904 porcent = 100.0* (z-minZ)/totalZ;
2905 tmpString.Printf(_T("Saving Values"));
2906 tmpString.Printf(_T("%d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2907 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2909 //Extraction data from contours of each slice
2910 _contourextractdata->SetZtoBeAnalys( z);
2913 Instant instant(&tempVector);
2914 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2915 sizeLstContourThings = lstContourThings.size();
2917 lstManConMod.clear();
2918 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2920 ContourThing **contourthing = lstContourThings[ii];
2921 lstManConMod.push_back( (*contourthing)->getModel() );
2923 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2926 int iContourGroup,sizeContourGroup;
2927 if (typeContourGroup==3) // contour separete
2929 sizeContourGroup=lstManConModExp.size();
2930 } else { // contour AND OR XOR
2934 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2935 lstManConModTmp.clear();
2936 if (typeContourGroup==3) // contour separete
2938 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2939 } else { // contour AND OR XOR
2940 lstManConModTmp = lstManConModExp;
2943 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2944 _contourextractdata->CalculateImageResult(); // with actual Z
2946 } // for iContourGroup
2949 (*value) = _contourextractdata->GetVtkImageValueResult();
2950 (*mask) = _contourextractdata->GetVtkImageMaskResult();
2954 std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
2956 std::string result="";
2957 if ( image->GetScalarType()==VTK_CHAR )
2960 } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
2962 } else if ( image->GetScalarType()==VTK_FLOAT ){
2964 } else if ( image->GetScalarType()==VTK_DOUBLE ){
2966 } else if ( image->GetScalarType()==VTK_INT ){
2968 } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
2970 } else if ( image->GetScalarType()==VTK_SHORT ){
2972 } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
2974 } else if ( image->GetScalarType()==VTK_LONG ){
2976 } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
2982 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2984 std::string stringType;
2986 kernelManager->GetSpacing(spc,0); // returns the spacing of the first image
2987 stringType = GetStringTypeImage(value);
2988 std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
2990 wxString filename = crea::std2wx(temp);
2994 vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
2995 //EED 2017-01-01 Migration VTK7
2996 #if VTK_MAJOR_VERSION <= 5
2997 valueChInfo->SetInput(value);
2999 valueChInfo->SetInputData(value);
3001 valueChInfo->SetSpacingScale(spc);
3002 valueChInfo->Update();
3003 vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3005 //EED 2017-01-01 Migration VTK7
3006 #if VTK_MAJOR_VERSION <= 5
3007 writerValueImage->SetInput( valueChInfo->GetOutput() );
3009 writerValueImage->SetInputData( valueChInfo->GetOutput() );
3011 writerValueImage->SetFileName( (const char *)filename.mb_str() );
3012 writerValueImage->SetFileDimensionality( 3 );
3013 writerValueImage->SetCompression(false);
3014 writerValueImage->Write( );
3017 stringType = GetStringTypeImage(mask);
3018 temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
3020 // LG 14/01/09 : using crea
3021 filename = crea::std2wx(temp);
3022 // filename.Printf(_T(temp.c_str()));
3025 vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3026 //EED 2017-01-01 Migration VTK7
3027 #if VTK_MAJOR_VERSION <= 5
3028 maskChInfo->SetInput(mask);
3030 maskChInfo->SetInputData(mask);
3032 maskChInfo->SetSpacingScale(spc);
3033 maskChInfo->Update();
3034 vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3036 //EED 2017-01-01 Migration VTK7
3037 #if VTK_MAJOR_VERSION <= 5
3038 writerMaskImage->SetInput( maskChInfo->GetOutput() );
3040 writerMaskImage->SetInputData( maskChInfo->GetOutput() );
3043 writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3044 writerMaskImage->SetFileDimensionality( 3 );
3045 writerMaskImage->SetCompression(false);
3046 writerMaskImage->Write( );
3048 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3054 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3055 if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3056 _theViewPanel->setActualVertical( value);
3058 else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) ) {
3059 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3065 void wxContourMainFrame::onSnakePressed(){
3066 std::vector<double> vecX;
3067 std::vector<double> vecY;
3068 std::vector<double> vecZ;
3069 _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3071 if (vecX.size()!=0){
3072 std::vector<int> tempVector;
3073 _instantPanel->getInstant( tempVector );
3074 int i,size=vecZ.size();
3075 int actualSlice = tempVector[1];
3076 for ( i=0 ; i<size ; i++ )
3078 vecZ[i] = actualSlice;
3081 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3082 wxPanel* panel = new wxPanel(dialog,-1);
3083 // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3084 new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3085 dialog->ShowModal();
3090 void wxContourMainFrame::saveFileWithContoursAutomatique()
3092 printf("EED wxContourMainFrame::saveFileWithContoursAutomatique \n");
3093 std::string filename = kernelManager->getCurrentFileName();
3094 if(filename.compare("")!=0){
3095 saveFileWithContours(filename);
3100 void wxContourMainFrame::ShowToolsPanel(bool show)
3102 _pannew->Show(show);
3107 void wxContourMainFrame::SetContourGroup(int contourGroup)
3109 _contourGroup = contourGroup;
3113 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3116 if (_viewMaskImagePanel==NULL)
3118 _contourextractdata = new ContourExtractData(true);
3119 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3121 // _theViewPanel->getImageData()->GetScalarRange(range);
3122 //int min = (int)floor (range[0]);
3123 //int max = (int)ceil (range[1]);
3129 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1, 0);
3130 _viewMaskImage = new ThresholdImageView();
3131 _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
3132 _viewMaskImage->SetminMaxValue( min, max);
3133 _viewMaskImage->SetBaseColor( 0,0,1 );
3136 std::vector<int> colorbarposition;
3137 colorbarposition.push_back( -999 );
3138 colorbarposition.push_back( -999 );
3139 _viewMaskImage->SetColorBarPosition( colorbarposition );
3141 _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3142 _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3144 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3145 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3146 _viewMaskImage->onThresholdChangeOpacity( 25 );
3148 return _viewMaskImagePanel;
3152 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3154 if (_viewColorLayerImagePanel==NULL)
3157 _theViewPanel->getImageData()->GetScalarRange(range);
3158 int min = (int)floor (range[0]);
3159 int max = (int)ceil (range[1]);
3160 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
3161 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
3162 // std::vector<double> range = bbGetInputlstRangeForColorBar();
3163 // clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
3164 std::vector<int> colorbarposition;
3165 colorbarposition.push_back( 50 );
3166 colorbarposition.push_back( 105 );
3167 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
3168 // std::vector<double> base_color;
3169 // _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
3170 // std::vector<double> grey_level_boundaries;
3171 // clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
3172 std::vector<double> transparence_level_boundaries;
3173 transparence_level_boundaries.push_back(0);
3174 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
3175 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
3176 // _viewColorLayerImagePanel->SetFittingMode( 3 );
3178 return _viewColorLayerImagePanel;
3182 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3184 if (_viewThresholdImagePanel==NULL)
3187 _theViewPanel->getImageData()->GetScalarRange(range);
3188 int min = (int)floor (range[0]);
3189 int max = (int)ceil (range[1]);
3190 int start= (max+min)/2 - (max-min)*0.25;
3191 int end= (max+min)/2 + (max-min)*0.25;
3192 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
3193 _viewThresholdImage = new ThresholdImageView();
3194 _viewThresholdImage->SetminMaxValue(start,end);
3195 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3196 std::vector<int> colorbarposition;
3197 colorbarposition.push_back( 10 );
3198 colorbarposition.push_back( 105 );
3199 _viewThresholdImage->SetColorBarPosition( colorbarposition );
3201 _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3202 _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3204 _viewThresholdImage->SetBaseColor( 1,0,0 );
3205 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3206 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3207 _viewThresholdImage->onThresholdChangeOpacity( 25 );
3210 return _viewThresholdImagePanel;
3213 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3214 int wxContourMainFrame::getType ()
3217 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3219 if(!currentSelection.empty())
3221 std::string cloneName = currentSelection [0];
3222 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3223 tipo = manualModel-> GetTypeModel();
3228 double wxContourMainFrame::getContourSizeInPixels()
3230 double contourSize = 0;
3232 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects(); if(!currentSelection.empty())
3233 if(!currentSelection.empty())
3235 std::string cloneName = currentSelection [0];
3237 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3240 // contourSize = manualModel->GetPathSize();
3245 contourSize = manualModel->GetPathSize( spc );
3250 manualBaseModel * wxContourMainFrame::getContour ()
3252 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3254 if(!currentSelection.empty())
3256 std::string cloneName = currentSelection [0];
3257 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3262 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3264 std::string labelAscii(label.ToAscii());
3265 int pos = labelAscii.find(" ");
3269 for (j=0 ; pos != string::npos;j++)
3271 labelAscii.replace( pos, 1, "_" );
3272 pos= labelAscii.find(" ");
3275 manualModel -> SetLabel(labelAscii);
3277 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3280 // double sizeInPixel = manualModel ->GetPathSize( );
3285 double sizeInPixel = manualModel ->GetPathSize( spc );
3287 double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3288 double realContourSize = sizeInPixel*onePixelRealSize;
3289 manualModel ->SetRealSize(realContourSize);
3292 double wxContourMainFrame::onePixelSize( double value)
3294 return _onePixelSize = value;
3297 std::string wxContourMainFrame::GetFileLocation()
3299 return _fileLocation;
3302 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3304 _fileLocation = newFileLocation;
3305 std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3308 kernelManager->setCurrentFileName(_fileLocation);
3310 //------------------------------------------------------------------------------------------------------------
3319 void wxContourMainFrame::FlipSelectedContours(int flipDirection)
3322 (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
3328 void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
3331 (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
3336 void wxContourMainFrame::FlipAllContours(int flipDirection)
3339 kernelManager->GetLstNameThings() ,
3344 void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
3347 getImageData()->GetExtent(ext);
3348 int sizeX = ext[1]-ext[0];
3349 int sizeY = ext[3]-ext[2];
3352 int i,sizeLstNameThings;
3353 int ii,sizeLstPoints;
3355 sizeLstNameThings = lstNameThings.size();
3356 for (i=0 ; i<sizeLstNameThings ; i++)
3358 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3359 if (flipDirection==0)
3361 manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3363 manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3365 }// for i list of Things
3367 //-- Static Contours
3369 lstNameThings = kernelManager->GetLstNameThingsStatic();
3370 sizeLstNameThings = lstNameThings.size();
3371 for (i=0 ; i<sizeLstNameThings ; i++)
3373 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3374 if (flipDirection==0)
3376 manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3378 manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3380 }// for i list of static things
3383 void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
3387 if (typeContourFlip==0) //
3389 FlipSelectedContours(flipDirection);
3392 if (typeContourFlip==1) //
3394 FlipActualSliceContours(flipDirection);
3397 if (typeContourFlip==2) //
3399 FlipAllContours(flipDirection);
3404 void wxContourMainFrame::SetXY(int x, int y)
3406 _theViewPanel->SetXY(x,y);