lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 //----------------------------------------------------------------------------------------------------------------
  27 // Class definition include
  28 //----------------------------------------------------------------------------------------------------------------
  29 #include "wxContourMainFrame.h"
  30
  31
  32
  33 //----------------------------------------------------------------------------------------------------------------
  34 // Includes
  35 //----------------------------------------------------------------------------------------------------------------
  36
  37
  38 #include "NameWrapper.h"
  39 #include "wx/artprov.h"
  40 #include "ConceptDataWrap.h"
  41 #include <creaWx.h>
  42
  43 #include <string>
  44 using namespace std;
  45
  46 //----------------------------------------------------------------------------------------------------------------
  47 // Class implementation
  48 //----------------------------------------------------------------------------------------------------------------
  49 /** @file wxContourMainFrame.cxx */
  50
  51         //------------------------------------------------------------------------------------------------------------
  52         // Constructors & Destructors
  53         //------------------------------------------------------------------------------------------------------------
  54
  55 wxContourMainFrame* wxContourMainFrame::instance=NULL;
  56 char wxContourMainFrame::COPY = 'C';
  57
  58         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  59                 //: wxPanel(parent, id, title, pos, size, style)
  60                 //: wxWindow(parent, id, pos, size, style)
  61                 : wxPanel(parent, id, pos, size, style)
  62         {
  63                 m_mgr.SetManagedWindow(this);
  64                 _contourGroup                           = 1;
  65                 _creatingContoursActive         = false;
  66                 _theViewPanel                           = NULL;
  67 //              _modelManager                           = NULL;
  68                 _instantPanel                           = NULL;
  69 //              _buttonsBar                                     = NULL;
  70 //              _gridPanel                                      = NULL;
  71 //              _drawToolsPanel                         = NULL;
  72 //              _operationsToolsPanel           = NULL;
  73                 //_autoFormsPanel                       = NULL;
  74 //              _standardToolsPanel                     = NULL;
  75 //              _editionToolsPanel                      = NULL;
  76 //              _listViewPanel                          = NULL;
  77 //              _sceneManager                           = NULL;
  78                 //_actualInstant                        = NULL;
  79                 _numberOfVariablesStatistics= 6+1;
  80
  81                 _refLineControl                         = NULL;
  82                 _refLineModel                           = NULL;
  83                 _refLineView                            = NULL;
  84 //              _actorPresent                           = false;
  85
  86                 // set up default notebook style
  87 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  88 //              m_notebook_theme = 0;
  89                 //wxContour_ActionCommandsID a;
  90
  91                 _contourextractdata                     = NULL;
  92                 _viewMaskImage                          = NULL;
  93                 _viewMaskImagePanel                     = NULL;
  94                 _viewThresholdImage                     = NULL;
  95                 _viewThresholdImagePanel        = NULL;
  96                 _viewColorLayerImagePanel       = NULL;
  97                 _frameShowResultImages          = NULL;
  98         }
  99
 100         wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
 101                 : wxPanel(parent, id, pos, size, style)
 102         {
 103                 m_mgr.SetManagedWindow(this);
 104                 _contourGroup                           = 1;
 105                 _creatingContoursActive         = false;
 106                 _theViewPanel                           = NULL;
 107                 _instantPanel                           = NULL;
 108                 _refLineControl                         = NULL;
 109                 _refLineModel                           = NULL;
 110                 _refLineView                            = NULL;
 111 //              _actorPresent                           = false;
 112                 _viewMaskImage                          = NULL;
 113                 _viewMaskImagePanel                     = NULL;
 114                 _viewThresholdImage                     = NULL;
 115                 _viewThresholdImagePanel        = NULL;
 116                 _viewColorLayerImagePanel       = NULL;
 117                 // set up default notebook style
 118                 m_notebook_style                        = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
 119                 m_notebook_theme                        = 0;
 120                 //wxContour_ActionCommandsID a;
 121                 _numberOfVariablesStatistics= 7;
 122                 _datadir                                        = datadir;
 123                 inredo                                          = 0;
 124                 inundo                                          = 0;
 125                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 126                 _performingOperation        = new PerformingOperation();
 127                 if(images.size() > 0)
 128                 {
 129                         this->setVectImages(images);
 130                 }
 131                 _contourextractdata                     = NULL;
 132 }
 133
 134 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 135 {
 136         _images = imgs;
 137         #if defined(_WIN32)
 138                 std::string str_home(getenv("USERPROFILE"));
 139         #elif defined(__GNUC__)
 140                 std::string str_home(getenv("HOME"));
 141         #endif
 142         std::string                             strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 143         std::vector<std::string>        conceptNameVect;
 144         std::vector<int>                        conceptSizeVect;
 145         notebook                = this->createNotebook();
 146         kernelManager   = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 147         _instantPanel   = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 148         _theViewPanel   = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 149 //-------------------------------------------------------------
 150         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 151         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 152         double val = _theViewPanel->getCurrentDeep();
 153         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 154         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 155         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 156         //*******************changeInstant();
 157         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 158         this->configurePanels( );
 159 }
 160
 161
 162         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
 163         {
 164                 if(instance == NULL)
 165                 {
 166                         instance=new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 167                 }
 168                 return instance;
 169         }
 170
 171         std::vector<vtkImageData*> wxContourMainFrame::getVectImages()
 172         {
 173                 return kernelManager->getVectImages();
 174         }
 175
 176         wxContourMainFrame* wxContourMainFrame::getInstance()
 177         {
 178                 return instance;
 179         }
 180
 181         void wxContourMainFrame::resetInstance()
 182         {
 183                 instance->Destroy();
 184         }
 185
 186         wxContourMainFrame::~wxContourMainFrame()
 187         {
 188                 delete _contourextractdata;
 189                 deleteAllContours();
 190                 _pannew->Close();
 191                 interfMainPanel::resetInstance();
 192                 delete kernelManager;
 193                 instance = NULL;
 194                 //_pannew->Destroy();
 195                 //delete _pannew;
 196
 197                 m_mgr.UnInit();
 198                 //delete m_mgr;
 199
 200                 //El problema al cerrar la aplicacion puede estar asociado
 201                 //a que  wxAUINotebook esta en la aplicacion
 202                 //principal (wxContourGUIExample)tambien
 203                 //EED????               delete _theViewPanel;
 204                 //EED????               delete _instantPanel;
 205                 //EED????               delete _buttonsBar;
 206                 //EED????               delete _actualInstant;
 207                 //EED????               delete _sceneManager;
 208         }
 209
 210
 211         //------------------------------------------------------------------------------------------------------------
 212         // Creational and initialization methods using WxAui
 213         //------------------------------------------------------------------------------------------------------------
 214         //
 215         wxAuiNotebook * wxContourMainFrame::createNotebook()
 216         {
 217                 wxSize client_size = GetClientSize();
 218                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 219                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 220                 return noteBook;
 221         }
 222
 223
 224         //------------------------------------------------------------------------------------------------------------
 225         // Creational and initialization methods
 226         //------------------------------------------------------------------------------------------------------------
 227         bool wxContourMainFrame::configurePanels( )
 228         {
 229                 bool configured = _theViewPanel!=NULL;
 230
 231                 configured &= _theViewPanel!=NULL;
 232                 if( _theViewPanel!=NULL )
 233                 {
 234                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 235                         m_mgr.Update();
 236                 }
 237                 if( configured )
 238                 {
 239                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 240                         m_mgr.Update();
 241                 }
 242                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 243                 m_mgr.Update();
 244                 SetMinSize(wxSize(300,300));
 245                 m_mgr.Update();
 246                 return configured;
 247         }
 248
 249
 250         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 251                 {
 252                 bool configured = panel!=NULL;
 253                 configured &= panel!=NULL;
 254
 255                 if( configured )
 256                 {
 257                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 258                         m_mgr.Update();
 259                 }
 260                 return configured;
 261         }
 262
 263         //------------------------------------------------------------------------------------------------------------
 264         //  Attributes getters and setters
 265         //------------------------------------------------------------------------------------------------------------
 266
 267
 268
 269         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 270         {
 271                 _instantPanel = theInstantChooserPanel;
 272         }
 273
 274 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 275 //      {
 276 //              _buttonsBar = theButtonsBar;
 277 //      }
 278
 279 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 280 //      {
 281 //              _gridPanel = theGridPanel;
 282 //      }
 283
 284 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 285 //      {
 286 //              _drawToolsPanel = theDrawToolsPanel;
 287 //      }
 288
 289 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 290 //      {
 291 //              _operationsToolsPanel = theOperationsToolsPanel;
 292 //      }
 293
 294 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 295 //      {
 296 //              _autoFormsPanel = theAutoFormsPanel;
 297 //      }
 298
 299 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 300 //      {
 301 //              _standardToolsPanel= theStandardToolsPanel;
 302 //      }
 303
 304 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 305 //      {
 306 //              _editionToolsPanel =  theEditionToolsPanel;
 307 //      }
 308
 309 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 310 //      {
 311 //              _listViewPanel = theListViewPanel;
 312 //      }
 313
 314
 315
 316 void wxContourMainFrame::onCreateContourSpline( ){
 317
 318         //JCP 20-10-08 Undo redo implementation
 319         saveState();
 320         //JCP 20-10-08 Undo redo implementation
 321         createContour( 1 );
 322
 323 }
 324
 325 void wxContourMainFrame::onCreateContourRectangle( )
 326 {
 327     //JCP 20-10-08 Undo redo implementation
 328         saveState();
 329         //JCP 20-10-08 Undo redo implementation
 330         createContour( 2 );
 331 }
 332
 333 void wxContourMainFrame::onCreateContourCircle( )
 334 {
 335     //JCP 20-10-08 Undo redo implementation
 336         saveState();
 337         //JCP 20-10-08 Undo redo implementation
 338         createContour( 3 );
 339 }
 340
 341 void wxContourMainFrame::onCreateContourLine( )
 342 {
 343     //JCP 20-10-08 Undo redo implementation
 344         saveState();
 345         //JCP 20-10-08 Undo redo implementation
 346         createContour( 6 );
 347 }
 348
 349 // RaC 09-09 --------------------------------------
 350 void wxContourMainFrame::onCreateContourPoints( )
 351 {
 352     //JCP 20-10-08 Undo redo implementation
 353         saveState();
 354         //JCP 20-10-08 Undo redo implementation
 355         createContour( 7 );
 356 }
 357 // RaC 09-09 --------------------------------------
 358
 359 // RaC 10-09 --------------------------------------
 360 void wxContourMainFrame::onCreateContourPolygon( )
 361 {
 362     //JCP 20-10-08 Undo redo implementation
 363         saveState();
 364         //JCP 20-10-08 Undo redo implementation
 365         createContour( 10 );
 366 }
 367 // RaC 10-09 --------------------------------------
 368
 369 //------------------------------------------------------------------------------------------------------------
 370
 371 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 372 {
 373         //Creating the manualBaseModel and including in the model
 374         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 375
 376         std::vector<int> instantVector;
 377         _instantPanel->getInstant( instantVector );
 378         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 379
 380         /*std::vector<int> instantVector;
 381         _instantPanel->getInstant( instantVector );
 382         std::string theName;
 383         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 384         bool addedModel = theName.compare("") != 0;//??
 385
 386         if( addedModel )
 387         {
 388                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 389                 _theViewPanel->getSpacing(spc);
 390                 //Adding the manualContourControler to interface objects structure
 391                 //Adding the manualViewContour to interface objects structure
 392                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 393                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 394         }
 395 }
 396
 397 void wxContourMainFrame::createContour( int typeContour )
 398 {
 399         //Creating the manualContourModel and including in the model
 400         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 401         std::vector<int> instantVector;
 402         _instantPanel->getInstant( instantVector );
 403
 404         std::vector<int> tempVector;
 405         getInstantVector( tempVector );
 406         manModelContour->SetLabel2( std::to_string(tempVector[1]) );
 407
 408         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 409         /*std::vector<int> instantVector;
 410         _instantPanel->getInstant( instantVector );
 411         std::string theName;
 412         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 413         bool addedModel = theName.compare("") != 0;//??
 414         if( addedModel )
 415         {
 416                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 417                 _theViewPanel->getSpacing(spc);
 418                 //Adding the manualContourControler to interface objects structure
 419                 //Adding the manualViewContour to interface objects structure
 420                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 421                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 422         } // if addedModel
 423 }
 424
 425 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 426
 427         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 428         manualBaseModel *manModelContour=NULL;
 429         manModelContour = manModelContourBullEye;
 430         if (panel!=NULL){
 431                 int iCrown,sizeCrowns,iSector,sizeSectors;
 432                 double radioA,radioB,ang,angDelta ;
 433                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 434                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 435                 {
 436                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 437                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 438                         if (iCrown==sizeCrowns-1)
 439                         {
 440                                 radioA  = 0;
 441                         } else {
 442                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 443                         }
 444                         radioA=radioA/100.0;
 445                         radioB=radioB/100.0;
 446                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 447                         {
 448                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 449                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 450                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 451                         } // for iSector
 452                 } // for iCrown
 453         } // if _panelBullEyeOptions
 454
 455         return manModelContour;
 456 }
 457
 458 void wxContourMainFrame :: saveState()
 459 {
 460         std::string temp = kernelManager->saveState();
 461         saveFileWithContours(temp);
 462 }
 463
 464 void wxContourMainFrame::onDeleteContour()
 465 {
 466         //JCP 20-10-08 Undo redo implementation
 467                 saveState();
 468                 //JCP 20-10-08 Undo redo implementation
 469
 470                 std::vector<std::string> lstKeyNameToBeErase;
 471                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 472                 deleteContours( lstKeyNameToBeErase );
 473 /*JCP 19 - 11 - 08
 474                 int i,size=_sceneManager->getSelectedObjects().size();
 475                 for(i=0;i<size;i++)
 476                 {
 477                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 478                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 479                         if ( ispartofstaticlist>=0 )
 480                         {
 481                                 std::vector<int> tempVector;
 482                                 _instantPanel->getInstant( tempVector );
 483                                 Instant instant(&tempVector);
 484                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 485                         }
 486                 }
 487
 488                 std::vector<std::string> lstKeyName;
 489                 std::vector<std::string> lstKeyNameActualSlice;
 490                 std::vector<std::string> lstKeyNameToBeErase;
 491
 492                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 493                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 494                 int k,kSize=lstKeyNameToBeErase.size();
 495                 int j,jSize=lstKeyNameActualSlice.size();
 496                 bool ok;
 497                 for (k=0;k<kSize; k++)
 498                 {
 499                         ok=false;
 500                         for (j=0;j<jSize; j++)
 501                         {
 502                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 503                                 {
 504                                         ok=true;
 505                                 }
 506                         } // for j
 507                         if (ok==true)
 508                         {
 509                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 510                         } // if ok
 511                 } // for k
 512
 513                 deleteContours( lstKeyName );
 514 JCP 19 - 11 - 08*/
 515 }
 516
 517 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 518 {
 519         int i,size=keyNamesVector.size();
 520         for (i=0;i<size;i++)
 521         {
 522                 deleteContour( keyNamesVector[i] );
 523         }
 524 }
 525
 526 void wxContourMainFrame :: deleteContour( std::string theKeyName )
 527 {
 528         /*
 529         manualContourModel                      * cModel;
 530         manualViewBaseContour           * cViewer;
 531         manualContourBaseControler      * cControler;
 532
 533         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 534         cControler      = conwrapviewControl->getControler();*/
 535
 536         //JCP 21 - 11 - 2008
 537         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 538         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 539
 540         if (isedit  && ispartofstaticlst)
 541         {
 542                 _theViewPanel->removeFromScene(theKeyName);
 543
 544                 kernelManager->deleteCModel(theKeyName);
 545                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 546                 //cViewer               = conwrapviewControl->getViewer();
 547                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 548                 //cControler* conwrapviewControl->getControler();
 549         //      delete cModel;
 550         //      delete cViewer;
 551         //      delete cControler;
 552         } // if editable
 553 //JCP 21 - 11 - 08
 554 }
 555
 556 void wxContourMainFrame::onDeleteContoursActSlice()
 557 {
 558         //JCP 20-10-08 Undo redo implementation
 559         saveState();
 560         //JCP 20-10-08 Undo redo implementation
 561
 562         std::vector<int> tempVector;
 563         getInstantVector( tempVector );
 564         deleteContours( getOutlinesName( tempVector[1] ) );
 565 //      deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 566
 567 }
 568 void wxContourMainFrame::onDeleteAllContours(){
 569         //JCP 20-10-08 Undo redo implementation
 570         saveState();
 571         deleteAllContours();
 572 }
 573 void wxContourMainFrame::deleteAllContours(){
 574         //JCP 20-10-08 Undo redo implementation
 575
 576         wxBusyCursor wait;
 577         std::vector<int> tempVector;
 578         _instantPanel->getInstant( tempVector );
 579
 580 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 581 //              the values in GetStart and GetEnd will then not be initialize also.
 582 //              We use instead the values given when initializing the _deletepanel.
 583
 584         //int minZ = _mbarrangeDeleteAll->GetStart();
 585         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 586         int minZ, maxZ;
 587
 588         minZ = 0;
 589         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 590
 591 //JCP --08-09-2008
 592
 593         _theViewPanel->getSceneManager()->removeSceneContours( );
 594         _theViewPanel->getSceneManager()->removeAllOutlines();
 595         kernelManager->removeAllOutlines();
 596 //JCP --08-09-2008
 597         /*
 598         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 599         {
 600                 _theViewPanel->getSceneManager()->removeSceneContours( );
 601                 _modelManager->removeAllOutlines();
 602                 _theViewPanel->getSceneManager()->removeAllOutlines();
 603
 604         } else {
 605                 for ( z=minZ ; z<=maxZ ; z++)
 606                 {
 607                         tempVector[1]=z;
 608                         Instant instant(&tempVector);
 609                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 610
 611                         sizeLstContourThings = lstContourThings.size();
 612                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 613                         {
 614                                 ContourThing **contourthing = lstContourThings[ii];
 615                                 deleteContour( (*contourthing)->getName() );
 616                         } //for ii
 617                 }// for z
 618         } // if
 619 JCP --08-09-2008 */
 620 }
 621
 622 void wxContourMainFrame::setConceptValue( std::string name, int value )
 623 {
 624         _instantPanel->setConceptValue(name, value);
 625 }
 626
 627
 628 ConceptDataWrap* wxContourMainFrame::getLastConceptData()
 629 {
 630         return _instantPanel->getLastConceptData();
 631 }
 632
 633
 634 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
 635 {
 636         return _instantPanel->getIfConceptCheckedAt( name, pos );
 637 }
 638
 639
 640
 641 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 642 {
 643         vtkImageData * mask;
 644         vtkImageData * value;
 645         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 646
 647         std::vector<int> nTypeView;
 648         nTypeView.push_back(5);
 649         nTypeView.push_back(1);
 650         nTypeView.push_back(2);
 651         nTypeView.push_back(0);
 652
 653         if (_frameShowResultImages==NULL)
 654         {
 655 //              wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 656                 _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
 657                      wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION |  wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER  );
 658
 659                 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 660                 m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
 661
 662                 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 663                 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 664
 665                 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 666                 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 667
 668
 669                 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 670                 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 671                 m_mgr_noteBookViewerResult->Update();
 672                 _frameShowResultImages->Show();
 673         } // if _frameShowResultImages
 674 }
 675
 676
 677
 678
 679 void wxContourMainFrame::changeInstant()
 680 {
 681                 std::vector<int> instantVect;
 682                 _instantPanel->getInstant( instantVect );
 683                 int actualSlice = instantVect[1];
 684                 kernelManager->setInstant(instantVect);
 685             // Refresh Mask image
 686                 if(_viewMaskImage!=NULL)
 687                 {
 688                         _viewMaskImage->SetZ(actualSlice);
 689                         if (_viewMaskImagePanel->IsVisible()==true)
 690                         {
 691                                 vtkImageData *mask, *value;
 692                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 693                                 _viewMaskImage->onThreshold();
 694                         }
 695                 } // if _viewMaskImage
 696         // Refresh Threshold image
 697                 if(_viewThresholdImage!=NULL)
 698                 {
 699                         _viewThresholdImage->SetZ(actualSlice);
 700                         if (_viewThresholdImagePanel->IsVisible()==true)
 701                         {
 702                                 _viewThresholdImage->onThreshold();
 703                         }
 704                 } // if _viewThresholdImage
 705                 updateInstantOutlines();
 706                 updateInstantImageData();
 707                 updateInstantAxes();
 708 }
 709
 710
 711
 712 void wxContourMainFrame::updateInstantOutlines()
 713 {
 714         _theViewPanel->removeSceneContours();
 715         _theViewPanel->addNameWrapperToScene();
 716
 717         //for( int i=0; i<size; i++)
 718         //{
 719         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 720         //}
 721 }
 722
 723 int wxContourMainFrame::getNamesWrappingSize()
 724 {
 725         return kernelManager->getNamesWrappingSize();
 726 }
 727
 728 std::string wxContourMainFrame::getNameWrapping(int i)
 729 {
 730         return kernelManager->getNameWrapping(i);
 731 }
 732
 733 void wxContourMainFrame::updateInstantImageData()
 734 {
 735         std::vector<int> inst;
 736         _instantPanel->getInstant(inst);
 737
 738         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 739         if(img!=NULL)
 740         {
 741                 _theViewPanel->changeImage(img);
 742                 showAxis(false);
 743         }else{
 744                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 745                 _theViewPanel->setImageSlice(z);
 746         } // if img
 747 }
 748
 749 void wxContourMainFrame::updateInstantAxes()
 750 {
 751 }
 752
 753
 754 void wxContourMainFrame::onChangeDeep(int val){
 755         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 756         changeInstant();
 757 }
 758
 759
 760 void wxContourMainFrame::onCopy(){
 761         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 762         std::vector<int> tempVector;
 763         _instantPanel->getInstant( tempVector );
 764     _performingOperation->reset();
 765         _performingOperation->setStartCommand( COPY );
 766         _performingOperation->setStartOperationInstantVector( tempVector );
 767         _performingOperation->setKeyNamesOperationElems( currentSelection );
 768 }
 769
 770 void wxContourMainFrame::onPaste()
 771 {
 772         char theStartCommand = _performingOperation->getStartCommand();
 773         if (  theStartCommand == COPY )
 774         {
 775                 //JCP 20-10-08 Undo redo implementation
 776                 saveState();
 777                 //JCP 20-10-08 Undo redo implementation
 778                 std::vector<int> tempVector;
 779                 _instantPanel->getInstant( tempVector );
 780                 _performingOperation->setEndOperationInstantVector ( tempVector );
 781                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 782                 int i,size = elems.size();
 783                 for( i=0; i<size; i++ )
 784                 {
 785                         createCopyContourOf( elems[i], tempVector, i>0 );
 786                 }
 787         }
 788 }
 789
 790 void wxContourMainFrame::onUndo()
 791 {
 792         std::string filename;
 793         if(kernelManager->onUndoSaveFile(filename)){
 794                 saveFileWithContours(filename);
 795         }
 796         if(kernelManager->onUndo(filename)){
 797                 loadState(filename);
 798         }
 799 }
 800 void wxContourMainFrame::onRedo(){
 801         std::string filename;
 802         if(kernelManager->onRedo(filename)){
 803                 loadState(filename);
 804         }
 805
 806 }
 807 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 808 {
 809         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 810         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 811         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 812 }
 813
 814 ///AD: 03-09    Copy the object and apply the given transformation
 815 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 816 {
 817         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 818         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 819
 820         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 821         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 822
 823         double pnt1X = refPoint1->GetX();
 824         double pnt1Y = refPoint1->GetY();
 825 //      double pnt1Z = refPoint1->GetZ();
 826         double pnt2X = refPoint2->GetX();
 827         double pnt2Y = refPoint2->GetY();
 828 //      double pnt2Z = refPoint2->GetZ();
 829
 830         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 831         vtkTransform *t = vtkTransform::New();
 832
 833         t->PostMultiply();
 834         t->Identity();
 835         t->Translate(-pnt1X, -pnt1Y, 0);
 836         t->RotateZ(-angle);
 837         t->Scale(-1,1,1);
 838         t->RotateZ(angle);
 839         t->Translate(pnt1X, pnt1Y, 0);
 840         t->Update();
 841
 842         int i,size=manualModel->GetSizeLstPoints();
 843         for (i=0;i<size;i++)
 844         {
 845                 manualPoint * mp = manualModel->GetManualPoint(i);
 846                 float vecIn[3];
 847                 float vecOut[3];
 848                 vecIn[0]=mp->GetX();
 849                 vecIn[1]=mp->GetY();
 850                 vecIn[2]=mp->GetZ();
 851                 t->TransformPoint( vecIn, vecOut );
 852                 mp->SetPointX( vecOut[0] );
 853                 mp->SetPointY( vecOut[1] );
 854                 mp->SetPointZ( vecOut[2] );
 855         } // for i
 856
 857         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 858 }
 859
 860 void wxContourMainFrame ::loadState(std::string filename)
 861 {
 862         deleteAllContours();
 863         onLoadContours(filename,false);
 864 }
 865
 866 void wxContourMainFrame::onLoad()
 867 {
 868         std::string fileNameContourROI = GetFileLocation();
 869 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 870         if(GetFileLocation().empty())
 871         {
 872 //------------------------------------------------------------------------------------------------------------
 873 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 874 #if wxMAJOR_VERSION <= 2
 875                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 876 #else
 877                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
 878 #endif
 879                 if (dialog.ShowModal() == wxID_OK)
 880                 {
 881                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 882                 } // if dialog
 883         } // if FileLocation
 884         onLoadContours(fileNameContourROI,true);
 885 }
 886
 887 void  wxContourMainFrame::SetZForAllContours(int pz)
 888 {
 889         //-- Normal Contours
 890         std::vector< std::string > lstNameThings;
 891         int i,sizeLstNameThings;
 892         int ii,sizeLstPoints;
 893         lstNameThings           = kernelManager->GetLstNameThings();
 894         sizeLstNameThings       = lstNameThings.size();
 895         for (i=0 ; i<sizeLstNameThings ; i++)
 896         {
 897 printf("EED wxContourMainFrame::SetZForAllContours contour=%d \n", i );
 898                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 899                 sizeLstPoints = manualModel->GetSizeLstPoints();
 900                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 901                 {
 902                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 903                 }// for ii  list of points
 904         }// for i  list of Things
 905
 906         //-- Static Contours
 907
 908         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 909         sizeLstNameThings       = lstNameThings.size();
 910         for (i=0 ; i<sizeLstNameThings ; i++)
 911         {
 912                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 913                 sizeLstPoints = manualModel->GetSizeLstPoints();
 914                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 915                 {
 916                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 917                 }// for ii  list of points
 918         }// for i  list of static things
 919 }
 920
 921 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
 922 {
 923         char tmp[255];
 924         char tmpD[255];
 925         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 926 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 927         if(pFile != NULL)
 928         {
 929 //------------------------------------------------------------------------------------------------------------
 930         fileNameContourROI.append("data");
 931                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 932                 if(pFileData != NULL)
 933                 {
 934                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 935                         fscanf(pFileData,"%s",tmpD); // Version
 936                         fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 937
 938                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 939                         fscanf(pFileData,"%s",tmpD); // #
 940                         _onePixelSize = atof(tmpD);
 941                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 942                         fscanf(pFileData,"%s",tmpD); // #
 943                 }
 944                 fscanf(pFile,"%s",tmp); // --CreaContour--
 945                 fscanf(pFile,"%s",tmp); // Version
 946                 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 947                 std::string version(tmp);
 948                 //AD:02-06-09
 949         _tmpReadFileTypeOfTransformation=-1;
 950                 if (version=="1.0.3")
 951                 {
 952                     readDimSpc(pFile,interactiveInterface);   // DimSpc interactive ON
 953                         openContours(pFile,pFileData,false);
 954                         openContours(pFile,pFileData,true);     //Load StaticContours
 955                 }
 956                 if (version=="1.0.2")
 957                 {
 958 //EED001
 959                         readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
 960                         openContours(pFile,pFileData,false);
 961                         readDimSpc(pFile,false);                // DimSpc interactive OFF
 962                         openContours(pFile,pFileData,true);     // Load StaticContours
 963                         SetZForAllContours(-900);
 964                 } else if (version=="1.0.1") { //AD:02-06-09
 965                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 966                         openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
 967                 } else if (version=="1.0.0") { //AD:02-06-09
 968                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 969                 }
 970                 fclose(pFile);
 971                 if(pFileData != NULL)
 972                 {
 973                         fclose(pFileData);
 974                 } // if
 975         } // pFile
 976         _theViewPanel->getSceneManager()->removeSceneContours();
 977         changeInstant();
 978 }
 979
 980
 981 void wxContourMainFrame::onImport()
 982 {
 983         std::string filename, filenamecontours;
 984 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 985 #if wxMAJOR_VERSION <= 2
 986         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
 987 #else
 988         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
 989 #endif
 990         if (dialog.ShowModal() == wxID_OK)
 991         {
 992                 filename = dialog.GetPath().mb_str();
 993                 filenamecontours = kernelManager->parseOsirixFile(filename);
 994
 995                 if(filenamecontours.compare("") != 0)
 996                 {
 997                         onLoadContours(filenamecontours,true);
 998                 } // if
 999         } // if
1000 }
1001
1002 void wxContourMainFrame::onTest()
1003 {
1004         std::string filename, filenamecontours;
1005 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1006 #if wxMAJOR_VERSION <= 2
1007         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1008 #else
1009         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
1010 #endif
1011         if (dialog.ShowModal() == wxID_OK)
1012         {
1013                 filename = dialog.GetPath().mb_str();
1014                 std::cout << "This is the filename: " << filename << std::endl;
1015         } // if
1016 }
1017
1018 //AD: 29-05-09
1019 void wxContourMainFrame::onSave()
1020 {
1021 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1022         if(GetFileLocation().empty())
1023         {
1024 //------------------------------------------------------------------------------------------------------------
1025 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1026 #if wxMAJOR_VERSION <= 2
1027                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1028 #else
1029                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
1030 #endif
1031                 if (dialog.ShowModal() == wxID_OK)
1032                 {
1033                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1034                         kernelManager->setCurrentFileName(fileNameContourROI);
1035                         saveFileWithContours( fileNameContourROI );
1036                 }
1037         } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
1038                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1039                 std::string fileNameContourROI = GetFileLocation();
1040                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1041                 kernelManager->setCurrentFileName(fileNameContourROI);
1042                 saveFileWithContours( fileNameContourROI);
1043         }
1044 //------------------------------------------------------------------------------------------------------------
1045 }
1046
1047 //AD: 29-05-09
1048 void wxContourMainFrame::saveFileWithContours( std::string filename )
1049 {
1050
1051         FILE *pFile=fopen(filename.c_str(),"w+");
1052
1053 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1054         filename.append("data");
1055         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1056         FILE *pFileData=fopen(filename.c_str(),"w+");
1057 //------------------------------------------------------------------------------------------------------------
1058
1059         std::vector< std::string > lstNameThings;
1060         int i,sizeLstNameThings;
1061
1062         fprintf(pFile,"--CreaContour--\n");
1063         fprintf(pFile,"Version %s\n", "1.0.3" );
1064
1065 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1066         fprintf(pFileData,"--CreaContour--\n");
1067         fprintf(pFileData,"Version %s\n", "1.0.3" );
1068         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1069
1070 //------------------------------------------------------------------------------------------------------------
1071
1072         vtkImageData *image = _images[0];
1073
1074         int dimRange[3];
1075         image->GetDimensions(dimRange);
1076
1077         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1078
1079         double spaRange[3];
1080         image->GetSpacing(spaRange);
1081
1082         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1083
1084         // Normal Contours
1085
1086         lstNameThings           = kernelManager->GetLstNameThings();
1087         sizeLstNameThings       = lstNameThings.size();
1088         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1089
1090 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1091         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1092 //------------------------------------------------------------------------------------------------------------
1093
1094
1095 // EED 2017-05-30
1096         double spc[3];
1097         spc[0]=1;
1098         spc[1]=1;
1099         spc[2]=1;
1100
1101         for (i=0 ; i<sizeLstNameThings ; i++)
1102         {
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1105
1106 // EED 2017-05-30
1107 //              double sizeInPixel = manualModel ->GetPathSize(  );
1108                 double sizeInPixel = manualModel ->GetPathSize( spc );
1109
1110                 double realContourSize = sizeInPixel*_onePixelSize;
1111                 manualModel ->SetRealSize(realContourSize);
1112 //------------------------------------------------------------------------------------------------------------
1113
1114         //int size= kernelManager->GetLstNameThings().size();
1115
1116                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1117                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1118         }// for i
1119
1120         //-- Static Contours
1121
1122 //      fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1123 //      fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1124
1125         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1126         sizeLstNameThings       = lstNameThings.size();
1127         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1128
1129 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1130         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1131 //------------------------------------------------------------------------------------------------------------
1132
1133         for (i=0 ; i<sizeLstNameThings ; i++)
1134         {
1135                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1136                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1137         }// for i
1138         fclose(pFile);
1139         fclose(pFileData);
1140 }
1141
1142
1143 //EED02
1144 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1145 {
1146         char tmp[255];
1147         int             imageDim[3];
1148         double          imageSpac[3];
1149         vtkImageData    *image          = _images[0];
1150     image->GetDimensions(imageDim);
1151     image->GetSpacing(imageSpac);
1152
1153     fscanf(pFile,"%s",tmp); // ImageDimensions
1154     fscanf(pFile,"%s",tmp); // X
1155     _tmpReadFileImageDim[0] = atoi(tmp);
1156     fscanf(pFile,"%s",tmp); // Y
1157     _tmpReadFileImageDim[1] = atoi(tmp);
1158     fscanf(pFile,"%s",tmp); // Z
1159     _tmpReadFileImageDim[2] = atoi(tmp);
1160
1161     fscanf(pFile,"%s",tmp); // ImageSpacing
1162     fscanf(pFile,"%s",tmp); // X
1163     _tmpReadFileImageSpac[0] = atof(tmp);
1164     fscanf(pFile,"%s",tmp); // Y
1165     _tmpReadFileImageSpac[1] = atof(tmp);
1166     fscanf(pFile,"%s",tmp); // Z
1167     _tmpReadFileImageSpac[2] = atof(tmp);
1168
1169
1170         if (interactiveOption==true)
1171     {
1172                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1173                 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1174                 {
1175                         wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
1176                         wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1177 //                      wxBoxSizer              *dialSizer = new wxBoxSizer(wxVERTICAL);
1178                         wxFlexGridSizer *dialSizer = new wxFlexGridSizer(1);
1179
1180                         wxString lstOptOperation[2];
1181                         lstOptOperation[0]=_T("By Dimension");
1182                         lstOptOperation[1]=_T("By Spacing");
1183                         wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,90), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1184
1185                         dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1186                         dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1187                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1188                         dialSizer->Add(radioOpts,0,wxGROW);
1189                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1190                         dialSizer->Add(buttonsSizer,0,wxGROW);
1191                         dial->SetSizer(dialSizer, true);
1192                         dial->Layout();
1193                         dial->ShowModal();
1194
1195                         int _tmpReadFileTypeOfTransformation = -1;
1196 //EED                   bool transform = false;
1197
1198                         if (dial->GetReturnCode() == wxID_OK)
1199                         {
1200                                 _tmpReadFileTypeOfTransformation    = radioOpts->GetSelection();
1201                         }// if wxOK
1202
1203                 } // if dim spc
1204     } // if interactiveOption
1205 }
1206
1207
1208
1209
1210 //AD:04-06-09
1211 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1212 {
1213
1214         char tmp[255];
1215
1216         vtkImageData    *image = _images[0];
1217
1218         int             imageDim[3];
1219         double          imageSpac[3];
1220     image->GetDimensions(imageDim);
1221     image->GetSpacing(imageSpac);
1222
1223
1224         fscanf(pFile,"%s",tmp); // NumberOfContours
1225         fscanf(pFile,"%s",tmp); // ##
1226         int numberOfContours = atoi(tmp);
1227
1228         std::vector<int> instantVector;
1229         int typeContourModel;
1230         manualBaseModel *manModelContour;
1231         int typeView;
1232
1233 /*
1234         if (compatible==true)
1235         {
1236                 int i;
1237                 for (i=0;i<numberOfContours;i++)
1238                 {
1239                         instantVector.clear();
1240                         fscanf(pFile,"%s",tmp); // Instant
1241
1242                         fscanf(pFile,"%s",tmp); // 1
1243                         instantVector.push_back( atoi(tmp) );
1244                         fscanf(pFile,"%s",tmp); // 2
1245                         instantVector.push_back( atoi(tmp) );
1246                         fscanf(pFile,"%s",tmp); // 3
1247                         instantVector.push_back( atoi(tmp) );
1248                         fscanf(pFile,"%s",tmp); // 4
1249                         instantVector.push_back( atoi(tmp) );
1250                         fscanf(pFile,"%s",tmp); // 5
1251                         instantVector.push_back( atoi(tmp) );
1252                         fscanf(pFile,"%s",tmp); // 6
1253                         instantVector.push_back( atoi(tmp) );
1254
1255
1256                         fscanf(pFile,"%s",tmp); // TypeContourModel
1257                         fscanf(pFile,"%s",tmp); // ##
1258                         typeContourModel = atoi(tmp);
1259
1260                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1261                         manModelContour->Open(pFile);
1262                         if(pFileData != NULL)
1263                         {
1264                                 manModelContour->OpenData(pFileData);
1265                         }
1266
1267                         fscanf(pFile,"%s",tmp); // TypeView
1268                         fscanf(pFile,"%s",tmp); // ##
1269                         typeView = atoi(tmp);
1270
1271                         std::string theName;
1272                         theName = kernelManager->createOutline( manModelContour, instantVector );
1273                         bool addedModel = theName.compare("") != 0;
1274                         if( addedModel )
1275                         {
1276                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1277                                 _theViewPanel->getSpacing(spc);
1278                                 //Adding the manualContourControler to interface objects structure
1279                                 //Adding the manualViewContour to interface objects structure
1280                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1281                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1282                         }
1283
1284                         if (staticContour) //StaticContours (will appear in all slices)
1285                         {
1286                                 Instant instant(&instantVector);
1287                                 kernelManager->changeContourOfManager( theName , &instant );
1288                         }
1289
1290                 }// for  numberOfContours
1291         }
1292
1293         else if (compatible==false)
1294         {
1295 */
1296
1297                 int i;
1298                 for (i=0;i<numberOfContours;i++)
1299                 {
1300                         instantVector.clear();
1301                         fscanf(pFile,"%s",tmp); // Instant
1302
1303                         fscanf(pFile,"%s",tmp); // 1
1304                         instantVector.push_back( atoi(tmp) );
1305                         fscanf(pFile,"%s",tmp); // 2
1306                         instantVector.push_back( atoi(tmp) );
1307                         fscanf(pFile,"%s",tmp); // 3
1308                         instantVector.push_back( atoi(tmp) );
1309                         fscanf(pFile,"%s",tmp); // 4
1310                         instantVector.push_back( atoi(tmp) );
1311                         fscanf(pFile,"%s",tmp); // 5
1312                         instantVector.push_back( atoi(tmp) );
1313                         fscanf(pFile,"%s",tmp); // 6
1314                         instantVector.push_back( atoi(tmp) );
1315
1316                         fscanf(pFile,"%s",tmp); // TypeContourModel
1317                         fscanf(pFile,"%s",tmp); // ##
1318                         typeContourModel = atoi(tmp);
1319
1320                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1321                         manModelContour->Open(pFile);
1322                         if(pFileData != NULL)
1323                         {
1324                                 manModelContour->OpenData(pFileData);
1325                         }
1326
1327             if (_tmpReadFileTypeOfTransformation==-1){
1328                 //nothing to do..
1329             } else if (_tmpReadFileTypeOfTransformation==0){
1330                 double transX, transY;
1331                 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];
1332                 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];
1333                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1334             } else if (_tmpReadFileTypeOfTransformation==1) {
1335                 double transX, transY;
1336                 transX = (double) _tmpReadFileImageSpac[0]/imageDim[0];
1337                 transY = (double) _tmpReadFileImageSpac[1]/imageDim[1];
1338                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1339             }
1340
1341                         fscanf(pFile,"%s",tmp); // TypeView
1342                         fscanf(pFile,"%s",tmp); // ##
1343                         typeView = atoi(tmp);
1344
1345                         std::string theName;
1346                         theName = kernelManager->createOutline( manModelContour, instantVector );
1347                         bool addedModel = theName.compare("") != 0;
1348                         if( addedModel )
1349                         {
1350                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1351                                 _theViewPanel->getSpacing(spc);
1352                                 //Adding the manualContourControler to interface objects structure
1353                                 //Adding the manualViewContour to interface objects structure
1354                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1355                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1356                         }
1357
1358                         if (staticContour) //StaticContours (will appear in all slices)
1359                         {
1360                                 Instant instant(&instantVector);
1361                                 kernelManager->changeContourOfManager( theName , &instant );
1362                         }
1363                 }// for  numberOfContours
1364
1365 /*      }    */
1366
1367 }
1368
1369 void wxContourMainFrame::RefreshInterface()
1370 {
1371         changeInstant();
1372         _theViewPanel->RefreshInterface();
1373         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1374         //wxvtk2dbaseview->Refresh();
1375 }
1376
1377 vtkImageData* wxContourMainFrame::getImageData()
1378 {
1379         return _theViewPanel->getImageData();
1380 }
1381
1382 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1383 {
1384         //JCP 20-10-08 Undo redo implementation
1385         saveState();
1386         //JCP 20-10-08 Undo redo implementation
1387
1388         wxBusyCursor wait;
1389         int                                     x                                       = _theViewPanel->GetX();
1390         int                                     y                                       = _theViewPanel->GetY();
1391         int                                     z                                       = _theViewPanel->GetZ();
1392         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1393         RefreshInterface();
1394 }
1395
1396 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1397 {
1398         int typeofcontour = 1;
1399         //Image Data
1400         vtkImageData    *imagedata      = getImageData();
1401         //Tipo de pixeles a utilizar internamente en ITK
1402         typedef   float  InternalPixelType;
1403         const     unsigned int    Dimension = 2;
1404         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1405         //Tipo de pixeles de salida 1
1406         typedef unsigned char OutputPixelType;
1407         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1408         //Tipo de pixeles de salida 2
1409         typedef unsigned short OutputPixelType2;
1410         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1411         //DefiniciÛn del thresholder
1412         typedef itk::BinaryThresholdImageFilter<
1413                                                         InternalImageType,
1414                                                         OutputImageType    >    ThresholdingFilterType;
1415         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1416         typedef itk::CastImageFilter<
1417                                 OutputImageType, OutputImageType2 >  CastFilterType;
1418         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1419         typedef itk::CastImageFilter<
1420                                 OutputImageType2, InternalImageType >  CastFilterType2;
1421         //Tercer tipo de conversiÛn
1422         typedef itk::RescaleIntensityImageFilter<
1423                                                                 InternalImageType,
1424                                                                 OutputImageType >   CastFilterType3;
1425         //Cuarto tipo de conversiÛn
1426         typedef itk::RescaleIntensityImageFilter<
1427                                                                 OutputImageType,
1428                                                                 OutputImageType >   CastFilterType4;
1429         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1430         thresholder->SetLowerThreshold( 0.0 );
1431         thresholder->SetUpperThreshold( 128 );
1432         thresholder->SetOutsideValue(  255  );
1433         thresholder->SetInsideValue(  0 );
1434         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1435         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1436         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1437 //EED10JUIN2011 typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1438         ConnectorType::Pointer connector        = ConnectorType::New();
1439         ConnectorType2::Pointer connector2      = ConnectorType2::New();
1440         CastFilterType::Pointer filter   = CastFilterType::New();
1441         CastFilterType2::Pointer filter2 = CastFilterType2::New();
1442         connector->SetInput( imagedata );
1443         filter2->SetInput(connector->GetOutput());
1444         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1445                                                                 InternalImageType,
1446                                                                 InternalImageType >  SmoothingFilterType;
1447         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1448         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1449                                                                 InternalImageType,
1450                                                                 InternalImageType >  GradientFilterType;
1451         typedef   itk::SigmoidImageFilter<
1452                                                                 InternalImageType,
1453                                                                 InternalImageType >  SigmoidFilterType;
1454         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1455         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1456         sigmoid->SetOutputMinimum(  0.0  );
1457         sigmoid->SetOutputMaximum(  255.0  );
1458         typedef  itk::FastMarchingImageFilter<
1459                                                                 InternalImageType,
1460                                                                 InternalImageType >    FastMarchingFilterType;
1461         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1462         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1463                                         InternalImageType >    GeodesicActiveContourFilterType;
1464         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1465                                                                                 GeodesicActiveContourFilterType::New();
1466         typedef  itk::ZeroCrossingImageFilter<
1467                                                                 InternalImageType,
1468                                                                 InternalImageType >    ZeroCrossingFilterType;
1469         ZeroCrossingFilterType::Pointer zeroCrossing =
1470                                                         ZeroCrossingFilterType::New();
1471         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1472         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1473         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1474         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1475         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1476         int it=atoi(  crea::wx2std(iter).c_str() );
1477         geodesicActiveContour->SetNumberOfIterations( it );
1478         smoothing->SetInput( filter2->GetOutput() );
1479         gradientMagnitude->SetInput( smoothing->GetOutput() );
1480         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1481         fastMarching->SetInput( sigmoid->GetOutput() );
1482         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1483         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1484         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1485         //thresholder->SetInput( zeroCrossing->GetOutput() );
1486         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1487         connector2->SetInput( thresholder->GetOutput()  );
1488         smoothing->SetTimeStep( 0.125 );
1489         smoothing->SetNumberOfIterations(  5 );
1490         smoothing->SetConductanceParameter( 9.0 );
1491         const double sigma      = atof(  crea::wx2std(sigm).c_str() );
1492         gradientMagnitude->SetSigma(  sigma  );
1493         const double alpha      =  atof(  crea::wx2std(alf).c_str() );
1494         const double beta       =  atof(  crea::wx2std(bet).c_str() );
1495         sigmoid->SetAlpha( alpha );
1496         sigmoid->SetBeta(  beta  );
1497         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1498         typedef FastMarchingFilterType::NodeType       NodeType;
1499         NodeContainer::Pointer seeds = NodeContainer::New();
1500         InternalImageType::IndexType  seedPosition;
1501         seedPosition[0]         = x;
1502         seedPosition[1]         = y;
1503         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1504         NodeType node;
1505         const double seedValue = - initialDistance;
1506         node.SetValue( seedValue );
1507         node.SetIndex( seedPosition );
1508         seeds->Initialize();
1509         seeds->InsertElement( 0, node );
1510         fastMarching->SetTrialPoints( seeds );
1511         fastMarching->SetSpeedConstant( 1.0 );
1512         fastMarching->SetOutputSize( connector->GetOutput()->GetBufferedRegion().GetSize() );
1513         fastMarching->SetStoppingValue( 800 );
1514         try
1515     {
1516 //              connector2->Update();
1517                 vtkImageData *idata = NULL;
1518                 idata                           = connector2->GetOutput();
1519                 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1520                 cntVTK->SetNumberOfContours( 1 );
1521                 cntVTK->SetValue( 0, 255 );
1522 //EED 2017-01-01 Migration VTK7
1523 #if VTK_MAJOR_VERSION <= 5
1524                 cntVTK->SetInput( idata );
1525                 cntVTK->Update( );
1526                 cntVTK->UpdateInformation();
1527 #else
1528                 cntVTK->SetInputData( idata );
1529 #endif
1530                 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1531 //EED 2017-01-01 Migration VTK7
1532 #if VTK_MAJOR_VERSION <= 5
1533                 cpd->SetInput( cntVTK->GetOutput( ) );
1534                 cpd->Update( );
1535                 cpd->UpdateInformation();
1536 #else
1537                 cpd->SetInputData( cntVTK->GetOutput( ) );
1538 #endif
1539                 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1540                 conn->SetExtractionModeToLargestRegion( );
1541 //EED 2017-01-01 Migration VTK7
1542 #if VTK_MAJOR_VERSION <= 5
1543                 conn->SetInput( cpd->GetOutput( ) );
1544                 conn->Update( );
1545                 conn->UpdateInformation();
1546 #else
1547                 conn->SetInputData( cpd->GetOutput( ) );
1548 #endif
1549                 vtkStripper* vtkstripper = vtkStripper::New( );
1550 //EED 2017-01-01 Migration VTK7
1551 #if VTK_MAJOR_VERSION <= 5
1552                 vtkstripper->SetInput( conn->GetOutput() );
1553                 vtkstripper->Update();
1554                 vtkstripper->UpdateInformation();
1555 #else
1556                 vtkstripper->SetInputData( conn->GetOutput() );
1557                 cntVTK->Update();
1558 #endif
1559                 vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1560                 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1561
1562 //EED 2017-01-01 Migration VTK7
1563 #if VTK_MAJOR_VERSION <= 5
1564                 polyDataResult->Update( );
1565                 polyDataResult->UpdateInformation();
1566 #else
1567         // ..
1568 #endif
1569                 cntVTK          -> Delete();
1570                 cpd                     -> Delete();
1571                 conn            -> Delete();
1572                 //--Calculating control points
1573                 std::vector<double> vecX;
1574                 std::vector<double> vecY;
1575                 std::vector<double> vecXo;
1576                 std::vector<double> vecYo;
1577                 std::vector<double>::iterator vecXoi;
1578                 std::vector<double>::iterator vecYoi;
1579                 std::vector<double> vecZ;
1580                 std::vector<double> vecCtrlPointX;
1581                 std::vector<double> vecCtrlPointY;
1582                 std::vector<double> vecCtrlPointZ;
1583                 double *p;
1584                 double xAct=0;
1585                 double yAct=0;
1586                 int ii,size=polyDataResult->GetNumberOfPoints();
1587                 ofstream myfile;
1588                 myfile.open ("C:/Creatis/example2.txt");
1589                 size=polyDataResult->GetNumberOfPoints();
1590                 for (ii=0;ii<size;ii++)
1591                 {
1592                         if(ii==0)
1593                         {
1594                                 xAct=x;
1595                                 yAct=y;
1596                         }
1597                         p       = polyDataResult->GetPoint(ii);
1598                         double x=p[0];
1599                         double y=p[1];
1600 //                      if(fabs(yAct-y)>20)
1601 //                      {
1602 //                              if((xAct-x)>1 || (xAct-x)<-1)
1603 //                              {
1604 //                                      vecX.push_back( p[0] );
1605 //                                      vecY.push_back( p[1] );
1606 //                                      myfile <<p[0]<<","<<p[1]<<"\n";
1607 //                                      std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1608 //                                      std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1609 //                                      std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1610 //                                      vecZ.push_back( 900 );
1611 //                                      xAct=x;
1612 //                                      yAct=y;
1613 //                              } else {
1614 //                                      vecXo.push_back(p[0]);
1615 //                                      vecYo.push_back(p[1]);
1616 //                              }
1617 //                      } else
1618
1619                         if(fabs(xAct-x)>11)
1620                         {
1621                                 vecXo.push_back(p[0]);
1622                                 vecYo.push_back(p[1]);
1623                         } else {
1624                                 vecX.push_back( p[0] );
1625                                 myfile <<p[0]<<","<<p[1]<<"\n";
1626                                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1627                                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1628                                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1629                                 vecY.push_back( p[1] );
1630 //EED 2017-12-16
1631                                 vecZ.push_back( -900 );
1632                                 xAct = x;
1633                                 yAct = y;
1634                         } // if xAct
1635
1636
1637                 } // for
1638
1639                 while(!vecXo.empty())
1640                 {
1641                         vecX.push_back(vecXo.back());
1642                         //std::cout<<" x Siguiente "<<vecXo.back();
1643                         vecXo.pop_back();
1644         //EED 2017-12-16
1645                         vecZ.push_back( -900 );
1646                 }
1647                 while(!vecYo.empty())
1648                 {
1649                         vecY.push_back(vecYo.back());
1650                                 vecYo.pop_back();
1651                 }
1652                 myfile.close();
1653
1654 //              for(int l=0;l<vecX.size();l++)
1655 //              {
1656 //                      if(l==0)
1657 //                      {
1658 //                vecXo.push_back(p[0]);
1659 //                              vecYo.push_back(p[1]);
1660 //                      } else {
1661 //                              if(vecXoi[l-1]==)
1662 //                              {
1663 //                              }
1664 //                      } // if
1665 //              } // for
1666
1667                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1668                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1669
1670                 int method=2;
1671                 if (method==0)
1672                 {
1673                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1674                 } else if (method==1){
1675                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1676                 } else if (method==2){
1677                         extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1678                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1679                 }
1680                 //--Adding contour to the system
1681
1682                 std::vector<int> actualInstantVector;
1683                 _instantPanel->getInstant( actualInstantVector );
1684                 actualInstantVector[1]=z;
1685
1686                 int j,sizeCtrPt = vecCtrlPointX.size();
1687
1688                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1689                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1690                 if (sizeCtrPt>=3){
1691                         for (j=0 ; j<sizeCtrPt ; j++)
1692                         {
1693                                 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1694                         } // for
1695                         std::string theName;
1696                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1697                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1698                         bool addedModel = theName.compare("") != 0;
1699                         if( addedModel )
1700                         {
1701                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1702                                 _theViewPanel->getSpacing(spc);
1703                                 //Adding the manualContourControler to interface objects structure
1704                                 //Adding the manualViewContour to interface objects structure
1705                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1706                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1707                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1708                         }       // if addedModel
1709                 } // if sizeCtrPt
1710
1711     }   catch( itk::ExceptionObject & excep ) {
1712                 std::cerr << "Exception caught !" << std::endl;
1713                 std::cerr << excep << std::endl;
1714     } // try
1715
1716 }
1717
1718 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1719
1720         //JCP 20-10-08 Undo redo implementation
1721         saveState();
1722         //JCP 20-10-08 Undo redo implementation
1723
1724         wxBusyCursor wait;
1725         int                                     x                                       = _theViewPanel->GetX();
1726         int                                     y                                       = _theViewPanel->GetY();
1727         int                                     z                                       = _theViewPanel->GetZ();
1728         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1729         RefreshInterface();
1730 }
1731
1732
1733 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1734 {
1735
1736 printf("EED wxContourMainFrame::SegmentationOneSlice Start=%d  %d\n",sampling,method );
1737 printf("EED wxContourMainFrame::SegmentationOneSlice %d %d %d  \n",x,y,z );
1738
1739         int typeofcontour = 1;
1740         //--Extracting Contour
1741         vtkImageData    *imagedata      = getImageData();
1742
1743         vtkImageReslice *imageReslice = vtkImageReslice::New();
1744 //EED
1745                 double spc[3];
1746                 imagedata->GetSpacing(spc);
1747                 x = x*spc[0];
1748                 y = y*spc[1];
1749                 z = z;
1750
1751 //EED 2017-01-01 Migration VTK7
1752 #if VTK_MAJOR_VERSION <= 5
1753         imageReslice->SetInput( imagedata );
1754 #else
1755         imageReslice->SetInputData( imagedata );
1756 #endif
1757         imageReslice->SetInformationInput(imagedata);
1758         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1759         imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
1760         imageReslice->SetOutputDimensionality(2);
1761         imageReslice->SetInterpolationModeToLinear();
1762
1763 //EED 2017-01-01 Migration VTK7
1764 #if VTK_MAJOR_VERSION <= 5
1765         // ..
1766 #else
1767         imageReslice->Update();
1768 #endif
1769
1770         imagedata = imageReslice->GetOutput();
1771 //EED 2017-01-01 Migration VTK7
1772 #if VTK_MAJOR_VERSION <= 5
1773         imagedata->Update();
1774         imagedata->UpdateInformation();
1775 #else
1776         // ..
1777 #endif
1778
1779         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1780 //EED 2017-01-01 Migration VTK7
1781 #if VTK_MAJOR_VERSION <= 5
1782         cntVTK->SetInput( imagedata );
1783 #else
1784         cntVTK->SetInputData( imagedata );
1785 #endif
1786
1787         cntVTK->SetNumberOfContours( 1 );
1788         //cntVTK->SetValue( 0, vmin );
1789 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1790         cntVTK->SetValue( 1, isovalue );
1791 //      cntVTK->SetValue( 1, vmax );
1792         cntVTK->Update( );
1793         cntVTK->UpdateInformation();
1794
1795         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1796 //EED 2017-01-01 Migration VTK7
1797 #if VTK_MAJOR_VERSION <= 5
1798         cpd->SetInput( cntVTK->GetOutput( ) );
1799 #else
1800         cpd->SetInputData( cntVTK->GetOutput( ) );
1801 #endif
1802         cpd->ConvertLinesToPointsOff( );
1803         cpd->Update( );
1804         cpd->UpdateInformation();
1805
1806         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1807
1808 //      conn->SetExtractionModeToPointSeededRegions();
1809 //      conn->SetExtractionModeToCellSeededRegions();
1810 //      conn->SetExtractionModeToSpecifiedRegions();
1811 //      conn->SetExtractionModeToLargestRegion();
1812 //      conn->SetExtractionModeToAllRegions();
1813
1814         conn->SetExtractionModeToClosestPointRegion();
1815
1816         //conn->SetMaxRecursionDepth( 3000 );
1817
1818 //EED 2017-01-01 Migration VTK7
1819 #if VTK_MAJOR_VERSION <= 5
1820         conn->SetInput( cpd->GetOutput( ) );
1821 #else
1822         conn->SetInputData( cpd->GetOutput( ) );
1823 #endif
1824
1825         conn->SetClosestPoint( x, y, 0 );
1826         conn->Update( );
1827         conn->UpdateInformation();
1828
1829         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1830 //EED 2017-01-01 Migration VTK7
1831 #if VTK_MAJOR_VERSION <= 5
1832         cpd2->SetInput( conn->GetOutput( ) );
1833 #else
1834         cpd2->SetInputData( conn->GetOutput( ) );
1835 #endif
1836         cpd2->Update();
1837         cpd2->UpdateInformation();
1838
1839         vtkStripper* vtkstripper = vtkStripper::New( );
1840 vtkstripper->SetJoinContiguousSegments(true);
1841         vtkstripper->SetMaximumLength(20000);
1842 //EED 2017-01-01 Migration VTK7
1843 #if VTK_MAJOR_VERSION <= 5
1844         vtkstripper->SetInput( cpd2->GetOutput() );
1845 #else
1846         vtkstripper->SetInputData( cpd2->GetOutput() );
1847 //      vtkstripper->SetInputData( cntVTK->GetOutput() );
1848
1849 #endif
1850         vtkstripper->Update();
1851         vtkstripper->UpdateInformation();
1852
1853
1854         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1855
1856 //EED 2017-01-01 Migration VTK7
1857 #if VTK_MAJOR_VERSION <= 5
1858         polyDataResult->Update( );
1859         polyDataResult->UpdateInformation();
1860 #else
1861         //...
1862 #endif
1863
1864 /* EED
1865 ofstream myfile;
1866 myfile.open ("c:/temp/example.txt");
1867 myfile << "\n";
1868 polyDataResult->Print(myfile);
1869 myfile << "-------------------------------------\n";
1870 polyDataResult->GetLines()->Print(myfile);
1871 myfile.close();
1872 */
1873         cntVTK  -> Delete();
1874         cpd2    -> Delete();
1875         cpd             -> Delete();
1876         conn    -> Delete();
1877
1878 //--Calculating control points
1879         std::vector<double> vecX;
1880         std::vector<double> vecY;
1881         std::vector<double> vecZ;
1882         std::vector<double> vecCtrlPointX;
1883         std::vector<double> vecCtrlPointY;
1884         std::vector<double> vecCtrlPointZ;
1885
1886 printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
1887
1888 int numberOfPointsInCell;
1889 int numberOfcells=polyDataResult->GetNumberOfCells();
1890 for (int jj=0; jj<numberOfcells ; jj++)
1891 {
1892         vtkCell* vtkcell = polyDataResult->GetCell( jj );
1893         numberOfPointsInCell=vtkcell->GetNumberOfPoints();
1894         printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d  points=%d \n",jj,numberOfPointsInCell );
1895 }// for jj
1896
1897 printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
1898
1899 polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
1900
1901
1902         if (polyDataResult->GetNumberOfCells()>0)
1903         {
1904                 double *p;
1905         printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
1906                 vtkCell* vtkcell = polyDataResult->GetCell( 0 );
1907         printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
1908         //      int ii,size=polyDataResult->GetNumberOfPoints();
1909                 int ii,size=vtkcell->GetNumberOfPoints();
1910         printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
1911                 int id;
1912                 for (ii=0;ii<size;ii++)
1913                 {
1914         //              id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1915         //              p       = polyDataResult->GetPoint(id);
1916                         p       = vtkcell->GetPoints()->GetPoint(ii);
1917
1918         printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d  px=%f py=%f\n",ii,id, p[0],p[1]);
1919         //              double x=p[0];
1920         //              double y=p[1];
1921                         vecX.push_back( p[0] );
1922                         vecY.push_back( p[1] );
1923         //EED 2017-12-16
1924                         vecZ.push_back( -900 );
1925         //                      vecZ.push_back( p[2] );
1926                 }
1927
1928                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1929                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1930
1931         //PROOFS
1932                 /*if (methodRadiobox->GetSelection()==0){
1933                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1934                 }
1935                 if (methodRadiobox->GetSelection()==1){
1936                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1937                 }
1938                 if (methodRadiobox->GetSelection()==2){
1939                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1940                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1941                 }*/
1942
1943                 if (method==0)
1944                 {
1945                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1946                 } else if (method==1){
1947                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1948                 } else if (method==2){
1949                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1950                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1951                 }
1952
1953                 //--Adding contour to the system
1954                 std::vector<int> actualInstantVector;
1955                 _instantPanel->getInstant( actualInstantVector );
1956                 actualInstantVector[1]=z;
1957
1958                 int j,sizeCtrPt = vecCtrlPointX.size();
1959                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1960                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
1961                 manModelContour->SetLabel2( std::to_string(z) );
1962                 if (sizeCtrPt>=3)
1963                 {
1964                         for (j=0 ; j<sizeCtrPt ; j++)
1965                         {
1966                                 manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
1967                         } // for
1968                         std::string theName;
1969                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1970                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1971                         bool addedModel = theName.compare("") != 0;
1972                         if( addedModel )
1973                         {
1974                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1975                                 _theViewPanel->getSpacing(spc);
1976                                 //Adding the manualContourControler to interface objects structure
1977                                 //Adding the manualViewContour to interface objects structure
1978                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1979                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1980                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1981                         }       // if addedModel
1982                 } // if sizeCtrPt
1983         } // if NumberOfCells > 0
1984
1985 printf("EED wxContourMainFrame::SegmentationOneSlice  End\n");
1986 }
1987
1988 int wxContourMainFrame::GetImageDataSizeZ()
1989 {
1990         return _theViewPanel->GetImageDataSizeZ();
1991 }
1992
1993 void wxContourMainFrame::GetImageDataRange(double *range)
1994 {
1995         _theViewPanel->GetImageDataRange(range);
1996 }
1997
1998 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
1999 {
2000         //JCP 20-10-08 Undo redo implementation
2001         saveState();
2002         //JCP 20-10-08 Undo redo implementation
2003
2004         wxBusyCursor wait;
2005         int                                     x = _theViewPanel->GetX();
2006         int                                     y = _theViewPanel->GetY();
2007         int                             z;
2008         double                          porcent;
2009         wxString                        tmpString;
2010         double                          totalZ = maxZ-minZ+1;
2011         for( z=minZ ; z<=maxZ ; z++ )
2012         {
2013                 porcent = 100.0* (z-minZ)/totalZ;
2014                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2015                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2016                 //_staticTextSegmentation->SetLabel(tmpString);
2017                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2018         }
2019         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2020         RefreshInterface();
2021 }
2022
2023
2024 //Creates a reference line to be used as the axis of the mirroring
2025 void wxContourMainFrame::referenceLine()
2026 {
2027         if (_refLineControl==NULL)
2028         {
2029                 wxBusyCursor wait;
2030                 double spc[3];
2031
2032                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2033                 vtkimagedata->GetSpacing(spc);
2034
2035                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2036
2037                 _refLineControl = new manualLineControler();
2038                 _refLineModel   = new manualContourModelLine();
2039                 _refLineView = new manualViewLine();
2040                 _refLineView->SetModel( _refLineModel );
2041                 _refLineView->SetWxVtkBaseView( viewer2D );
2042                 _refLineView->SetRange( 2 );
2043                 _refLineView->SetZ( 1200 );
2044
2045                 _refLineView->SetSpacing(spc);
2046
2047                 _refLineView->SetColorNormalContour(0, 0, 1);
2048                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2049                 _refLineView->SetWidthLine(4);
2050
2051                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2052                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2053                 style->AddInteractorStyleMaracas( _refLineControl );
2054                 _refLineModel->SetCloseContour(false);
2055                 _refLineControl->CreateNewManualContour();
2056
2057 //AD: Inicializar el mirroring con una linea ya pintada
2058         /*
2059                 double z = _refLineControl->GetZ();
2060
2061                 int imageDim[3];
2062                 image->GetDimensions(imageDim);
2063                 double x = (double) imageDim[0]/2;
2064                 double y1 = (double) (imageDim[1]/2)+15;
2065                 double y2 = (double) (imageDim[1]/2)-15;
2066
2067                 _refLineControl->AddPoint(x,y1,z);
2068                 _refLineControl->AddPoint(x,y2,z);
2069                 _refLineControl->SetCompleteCreation(true);
2070
2071                 _refLineModel->AddPoint(x,y1,z);
2072                 _refLineModel->AddPoint(x,y2,z);
2073                 _refLineModel->UpdateSpline();
2074
2075                 _refLineView->UpdateViewPoint(0);
2076                 _refLineView->UpdateViewPoint(1);
2077         */
2078
2079                 _refLineControl->SetActive(true);
2080                 _refLineView->RefreshContour();
2081         }
2082 }
2083
2084 //Hides the referenceLine
2085 void wxContourMainFrame::refLineHide()
2086 {
2087         if (_refLineControl!=NULL)
2088         {
2089                 if (_refLineControl->GetActive())
2090                 {
2091                         _refLineView->RemoveCompleteContourActor();
2092                         _refLineControl->SetEditable(false);
2093                         _refLineControl->SetActive(false);
2094
2095                         RefreshInterface();
2096                 }
2097         }
2098 }
2099
2100 //Shows the referenceLine
2101 void wxContourMainFrame::refLineShow()
2102 {
2103         if (_refLineControl!=NULL)
2104         {
2105                 if (_refLineControl->GetActive()==false)
2106                 {
2107                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2108
2109                         _refLineView->SetModel( _refLineModel );
2110                         _refLineView->SetWxVtkBaseView( viewer2D );
2111                         _refLineView->SetRange( 2 );
2112                         _refLineView->SetZ( 1200 );
2113
2114                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2115                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2116                         style->AddInteractorStyleMaracas( _refLineControl );
2117                         _refLineControl->CreateNewManualContour();
2118                         _refLineControl->SetActive(true);
2119                         _refLineView->RefreshContour();
2120
2121                         RefreshInterface();
2122                 }
2123         }
2124 }
2125
2126 void wxContourMainFrame::refLineChangeWidth(int width)
2127 {
2128         _refLineView->SetWidthLine(width);
2129         _refLineView->RefreshContour();
2130
2131         RefreshInterface();
2132 }
2133
2134
2135 void wxContourMainFrame::onMirror()
2136 {
2137         //AD:02-09
2138         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2139         std::vector<std::string> filterCurrentSelection;
2140
2141         std::vector<int> tempVector;
2142         _instantPanel->getInstant( tempVector );
2143     _performingOperation->reset();
2144         _performingOperation->setStartCommand( COPY );
2145         _performingOperation->setStartOperationInstantVector( tempVector );
2146         _performingOperation->setKeyNamesOperationElems( currentSelection );
2147
2148         char theStartCommand = _performingOperation->getStartCommand();
2149         if (  theStartCommand == COPY )
2150         {
2151                 //JCP 20-10-08 Undo redo implementation
2152                 saveState();
2153                 //JCP 20-10-08 Undo redo implementation
2154                 std::vector<int> tempVector;
2155                 _instantPanel->getInstant( tempVector );
2156                 _performingOperation->setEndOperationInstantVector ( tempVector );
2157                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2158                 int i,size = elems.size();
2159                 for( i=0; i<size; i++ )
2160                 {
2161                         createMirrorContourOf( elems[i], tempVector, i>0 );
2162                 }
2163         }
2164
2165         //deleteContour( _refName );
2166         //_refName = "";
2167 }
2168
2169
2170 void wxContourMainFrame::showAxis(bool show)
2171 {
2172         _theViewPanel->SetVisibleAxis(show);
2173         _theViewPanel->Refresh();
2174 }
2175
2176
2177 void wxContourMainFrame::onRigidPressed(){
2178         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2179         int elementsSelected = currentSelection.size();
2180
2181         if ( elementsSelected >= 1 ){
2182                 //JCP 20-10-08 Undo redo implementation
2183                 saveState();
2184                 //JCP 20-10-08 Undo redo implementation
2185
2186                 std::vector<int> tempVector;
2187                 _instantPanel->getInstant( tempVector );
2188                 Instant instant(&tempVector);
2189
2190                 int i , size=currentSelection.size();
2191                 for ( i=0 ; i<size ; i++ )
2192                 {
2193                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2194                 } // i
2195         }
2196 }
2197
2198 void wxContourMainFrame::onWidthOfContour(double width){
2199
2200         _theViewPanel->removeSceneContours();
2201         _theViewPanel->SetWidthContour(width);
2202
2203         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2204
2205         RefreshInterface();
2206 }
2207
2208 int wxContourMainFrame::getColorWindow()
2209 {
2210         /*
2211         double range[2];
2212         vtkImageData * img = getImageData();
2213         img->GetScalarRange(range);
2214
2215         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2216
2217         return (int)range[1];
2218         */
2219         return _theViewPanel->getColorWindow();
2220 }
2221
2222 int wxContourMainFrame::getWindowLevel()
2223 {
2224         /*
2225         double range[2];
2226         vtkImageData * img = getImageData();
2227         img->GetScalarRange(range);
2228
2229         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2230
2231         return (int)range[1];
2232         */
2233         return _theViewPanel->getWindowLevel();
2234 }
2235
2236 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
2237 {
2238         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2239
2240         RefreshInterface();
2241 }
2242
2243 void wxContourMainFrame::onInterpolation(bool interpolate)
2244 {
2245         _theViewPanel->onInterpolation(interpolate);
2246         RefreshInterface();
2247 }
2248
2249 void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
2250 {
2251         _theViewPanel->onBeforeAfterContour(before,after);
2252         RefreshInterface();
2253 }
2254
2255 void wxContourMainFrame::onJumpSlice(int step, int shift)
2256 {
2257         std::vector<int> tempVector;
2258         _instantPanel->getInstant( tempVector );
2259         int ss  = abs(step);
2260         int pos         = tempVector[1];
2261         int maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2262         pos=(pos/ss)*ss+step+shift;
2263         if ((pos>=0) && (pos<maxZ))
2264         {
2265                 tempVector[1]=pos;
2266                 _instantPanel->setInstant( tempVector );
2267                 RefreshInterface();
2268         } // if pos
2269 }
2270
2271 void wxContourMainFrame::onShowTextContour(bool show)
2272 {
2273         _theViewPanel->onShowTextContour(show);
2274         RefreshInterface();
2275 }
2276
2277 void wxContourMainFrame::onChangeInstant(std::string name,int actual)
2278 {
2279         _instantPanel->setConceptValue( name, actual );
2280 }
2281
2282 void wxContourMainFrame::resetAppend()
2283 {
2284         kernelManager->resetAppend();
2285 }
2286
2287 void wxContourMainFrame::onSpreadAdd()
2288 {
2289         std::vector<double> vecX;
2290         std::vector<double> vecY;
2291         std::vector<double> vecZ;
2292         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2293         std::vector<int> tempVector;
2294         _instantPanel->getInstant( tempVector );
2295         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2296         interfMainPanel::getInstance()->appendStringSpread(val);
2297 }
2298
2299
2300 void wxContourMainFrame::onSpreadAddAll()
2301 {
2302 //EED02
2303         std::vector<int> tempVector;
2304         _instantPanel->getInstant( tempVector );
2305         int minZ,maxZ;
2306     minZ        = 0;
2307     maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2308         int z;
2309         int sizeLstContourThings;
2310         for ( z=minZ ; z<=maxZ ; z++ )
2311         {
2312                 tempVector[1]=z;
2313                 Instant instant(&tempVector);
2314                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2315                 sizeLstContourThings = lstContourThings.size();
2316                 if (sizeLstContourThings>=1)
2317         {
2318             std::vector<double> vecX;
2319             std::vector<double> vecY;
2320             std::vector<double> vecZ;
2321             ContourThing **contourthing = lstContourThings[0];
2322                         manualBaseModel *cModel                         =  (*contourthing)->getModel();
2323                         int i,size = cModel->GetNumberOfPointsSpline();
2324                         double x,y,z;
2325                         for (i=0; i<size; i++)
2326                         {
2327                                 cModel->GetSpline_i_Point(i, &x, &y, &z);
2328                                 vecX.push_back(x);
2329                                 vecY.push_back(y);
2330                                 vecZ.push_back(z);
2331                         } // for i
2332             std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2333             interfMainPanel::getInstance()->appendStringSpread(val);
2334         }// if sizeLstContourThings
2335     } // for z
2336 }
2337
2338
2339 void wxContourMainFrame::onSpreadGo(int type)
2340 {
2341         //JCP 20-10-08 Undo redo implementation
2342         saveState();
2343         //JCP 20-10-08 Undo redo implementation
2344         wxBusyCursor wait;
2345         std::vector<double> vecCtrlPointX;
2346         std::vector<double> vecCtrlPointY;
2347         std::vector<double> vecCtrlPointZ;
2348         double  minZ,maxZ;
2349         int z;
2350
2351         std::vector<int> tempVector;
2352         _instantPanel->getInstant( tempVector );
2353 //              tempVector[1];
2354
2355         kernelManager->getMaxMinZ(&minZ,&maxZ);
2356 //JSTG_16-07-08_----------------------------------------------------------------
2357         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2358         kernelManager->CalculeSplinePropagation();
2359
2360         double          totalZ = maxZ-minZ+1;
2361         double          porcent;
2362         wxString        tmpString;
2363 //--------------------------------------------------------------------
2364         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2365         {
2366                 porcent = 100.0* (z-minZ)/totalZ;
2367                 int numero = (int)(z-minZ+1)/(int)totalZ;
2368                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2369
2370                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2371
2372                 int typeofcontour = 1;
2373                 std::string theName;
2374                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2375
2376                 if( manModelContour!=NULL ){
2377                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2378                         this->_theViewPanel->getSpacing(spc);
2379                         //Adding the manualContourControler to interface objects structure
2380                         //Adding the manualViewContour to interface objects structure
2381                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2382                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2383                 } // if addedModel
2384         }
2385         if(z > maxZ){
2386                 porcent = 100.0;
2387                 int numero = (int)(z-minZ+1)/(int)totalZ;
2388                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2389
2390                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2391         }// for z
2392         //RefreshInterface();
2393 }
2394
2395 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
2396 {
2397         _instantPanel->getInstant( tempVector );
2398 }
2399
2400 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
2401 {
2402         std::vector<int> tempVector;
2403         _instantPanel->getInstant(tempVector);
2404         //Asignation of slide number should be different ex by name
2405         tempVector[1]=slide;
2406         return kernelManager->getOutlinesNameAtInstant(tempVector);
2407 }
2408
2409
2410 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2411 {
2412         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2413 }
2414
2415
2416 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2417 {
2418
2419         wxString tempString;
2420         int maxContourGroup     =       0;
2421
2422         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2423
2424         std::vector<manualBaseModel*> lstManConMod;
2425         std::vector<manualBaseModel*> lstManConModTmp;
2426         std::vector<manualBaseModel*> lstManConModExp;
2427         std::vector<double> pLstValue;
2428         std::vector<double> pLstValuePosX;
2429         std::vector<double> pLstValuePosY;
2430         std::vector<double> pLstValuePosZ;
2431
2432         int             resultSize;
2433         int             resultGrayRangeCount;
2434         double  resultMin;
2435         double  resultMax;
2436         double  resultAverage;
2437         double  resultStandardeviation;
2438
2439         std::vector<int> tempVector;
2440         _instantPanel->getInstant( tempVector );
2441
2442         int z;
2443         int ii,sizeLstContourThings;
2444
2445
2446         int minZ,maxZ;
2447         double totalZ;
2448         double porcent;
2449         wxString tmpString;
2450
2451
2452         if (selection==0 ) // actual slice
2453         {
2454                 int actualSlice = tempVector[1];
2455                 minZ    = actualSlice;
2456                 maxZ    = actualSlice;
2457         }       else  {  // slice range
2458                 minZ    = minimumZ;
2459                 maxZ    = maximumZ;
2460         }
2461
2462
2463         totalZ  = maxZ-minZ+1;
2464
2465         _contourextractdata->InitVolumeStatistics();
2466
2467 // For each slice..
2468         for ( z=minZ ; z<=maxZ ; z++ )
2469         {
2470
2471                 porcent = 100.0* (z-minZ)/totalZ;
2472                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2473
2474                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2475                 //_staticTextInformation->SetLabel(tmpString);
2476
2477                 //Extraction data from contours of each slice
2478                 _contourextractdata->SetZtoBeAnalys(z);
2479
2480                 tempVector[1]=z;
2481                 Instant instant(&tempVector);
2482                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2483                 sizeLstContourThings = lstContourThings.size();
2484
2485                 lstManConMod.clear();
2486                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2487                 {
2488                         ContourThing **contourthing = lstContourThings[ii];
2489                         lstManConMod.push_back( (*contourthing)->getModel() );
2490                 }
2491
2492                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2493
2494                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2495                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2496                 //_grid->SetRowLabelValue(z, tempString );
2497 //EED004
2498                 int iContourGroup,sizeContourGroup;
2499                 if (typeContourGroup==3) // contour separete
2500                 {
2501                         sizeContourGroup=lstManConModExp.size();
2502                         if ( maxContourGroup<sizeContourGroup )
2503                         {
2504                                 maxContourGroup=sizeContourGroup;
2505                         }
2506                 } else {  // contour AND OR XOR
2507                         sizeContourGroup=1;
2508                         maxContourGroup=1;
2509                 }
2510
2511                 int tmpIntA;
2512
2513                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2514                         lstManConModTmp.clear();
2515
2516
2517
2518                         if (typeContourGroup==3) // contour separete
2519                         {
2520                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2521                         } else {  // contour AND OR XOR
2522                                 lstManConModTmp = lstManConModExp;
2523                         }
2524
2525                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2526                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2527
2528                         pLstValue.clear();
2529                         pLstValuePosX.clear();
2530                         pLstValuePosY.clear();
2531                         pLstValuePosZ.clear();
2532
2533
2534                         int numberOfPixels;
2535                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2536                                                                                                                 &pLstValue,
2537                                                                                                                 &pLstValuePosX,
2538                                                                                                                 &pLstValuePosY,
2539                                                                                                                 &pLstValuePosZ);
2540
2541                         resultSize=numberOfPixels;
2542                         // Statistics of each slice.
2543                         _contourextractdata->Statistics( &pLstValue,
2544                                                                                         grayRangeMin,
2545                                                                                         grayRangeMax,
2546                                                                                         &resultGrayRangeCount,
2547                                                                                         &resultSize,
2548                                                                                         &resultMin,
2549                                                                                         &resultMax,
2550                                                                                         &resultAverage,
2551                                                                                         &resultStandardeviation);
2552
2553                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2554                         {
2555                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2556                         }
2557
2558                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2559
2560                         tempString.Printf(_T("%d"),numberOfPixels);
2561
2562                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2563
2564                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2565                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2566
2567                         tempString.Printf(_T("%f"),resultMin);
2568                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2569
2570                         tempString.Printf(_T("%f"),resultMax);
2571                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2572
2573                         tempString.Printf(_T("%f"),resultAverage);
2574                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2575
2576                         tempString.Printf(_T("%f"),resultStandardeviation);
2577                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2578
2579
2580                 } // for iContourGroup
2581         } // for z
2582
2583         // Print Volume Statistics
2584
2585
2586         int             vol_rCountRange;
2587         int             vol_rsize;
2588         double  vol_minValue;
2589         double  vol_maxValue;
2590         double  vol_average;
2591         double  vol_standardeviation;
2592
2593         if (selection!=0 ) // actual slice
2594         {
2595
2596                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2597                                                                                                  &vol_minValue, &vol_maxValue,
2598                                                                                                  &vol_average, &vol_standardeviation);
2599
2600                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2601
2602                 tempString.Printf(_T("%d"),vol_rsize);
2603                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2604
2605                 tempString.Printf(_T("%d"),vol_rCountRange);
2606                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2607
2608                 tempString.Printf(_T("%f"),vol_minValue);
2609                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2610
2611                 tempString.Printf(_T("%f"),vol_maxValue);
2612                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2613
2614                 tempString.Printf(_T("%f"),vol_average);
2615                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2616
2617                 tempString.Printf(_T("%f"),vol_standardeviation);
2618                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2619         }
2620         //-----------------------------------------
2621
2622         int iTitleGroup;
2623         wxString tmpTitleString;
2624         int tmpIntB;
2625         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2626         {
2627                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2628                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2629                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2630
2631                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2632                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2633                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2634                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2635                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2636                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2637                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2638         }// for title
2639         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2640 }
2641
2642 //AD: 29-05-09
2643 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2644         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2645 {
2646         if (XYZValues)
2647         {
2648                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2649         }
2650
2651         if (contourImage)
2652         {
2653                 vtkImageData * mask;
2654                 vtkImageData * value;
2655                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2656                 this->SaveImageResult( directory , namefile, mask, value);
2657         }
2658
2659         if (statistics)
2660         {
2661                 std::ostringstream name;
2662                 name << filename << ".xls";
2663
2664
2665                 FILE *pFile=fopen(name.str().c_str(),"w+");
2666
2667
2668                 wxString tmpString;
2669                 int i,j,maxX;
2670
2671 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2672 //              int maxY=sizeZ+2;
2673
2674                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2675
2676                 // -- Title --
2677                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2678                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2679                 {
2680                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2681                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2682                 }
2683                 fprintf(pFile,"\n\n" );
2684
2685
2686
2687                 if (selection==0 ) // actual slice
2688                 {
2689                         std::vector<int> tempVector;
2690                         _instantPanel->getInstant( tempVector );
2691                         int actualSlice = tempVector[1];
2692                         minZ    = actualSlice;
2693                         maxZ    = actualSlice;
2694                 }
2695
2696                 // Stadistics...
2697                 for ( j=minZ; j<=maxZ ; j++)
2698                 {
2699                         fprintf(pFile,"%d\t" , j );
2700                         for (i=0 ; i<maxX ; i++){
2701                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2702                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2703                         } // for i
2704                         fprintf(pFile,"\n"  );
2705                 } // for j
2706
2707
2708                 // Total of stadistics.....
2709                 if (selection!=0)
2710                 {
2711                         fprintf(pFile,"\n Total:\t"  );
2712                         for (i=0 ; i<maxX ; i++){
2713                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2714                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2715                         } // for i
2716                         fprintf(pFile,"\n"  );
2717                 }
2718
2719                 fclose(pFile);
2720         }
2721 }
2722
2723 //AD: 29-05-09
2724 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2725 {
2726         wxBusyCursor wait;
2727
2728         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2729         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2730
2731         std::vector<manualBaseModel*> lstManConMod;
2732         std::vector<manualBaseModel*> lstManConModTmp;
2733         std::vector<manualBaseModel*> lstManConModExp;
2734         std::vector<double> pLstValue;
2735         std::vector<double> pLstValuePosX;
2736         std::vector<double> pLstValuePosY;
2737         std::vector<double> pLstValuePosZ;
2738
2739         std::vector<int> tempVector;
2740         _instantPanel->getInstant( tempVector );
2741
2742         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2743         int z;
2744         int ii,sizeLstContourThings;
2745
2746
2747         int minZ,maxZ;
2748         double totalZ;
2749         double porcent;
2750         wxString tmpString;
2751         minZ    = 0;// _mbarrange->GetStart();
2752         maxZ    = sizeZ;//_mbarrange->GetEnd();
2753         totalZ  = maxZ-minZ+1;
2754
2755
2756 // For each slice..
2757         for ( z=0 ; z<sizeZ ; z++)
2758         {
2759
2760                 porcent = 100.0* (z-minZ)/totalZ;
2761
2762                 tmpString.Printf(_T("Saving Values"));
2763                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2764                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2765                 //_staticTextInformation->SetLabel(tmpString);
2766
2767
2768                 //Extraction data from contours of each slice
2769                 _contourextractdata->SetZtoBeAnalys( z);
2770
2771                 tempVector[1]=z;
2772                 Instant instant(&tempVector);
2773                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2774                 sizeLstContourThings = lstContourThings.size();
2775
2776                 lstManConMod.clear();
2777                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2778                 {
2779                         ContourThing **contourthing = lstContourThings[ii];
2780                         lstManConMod.push_back( (*contourthing)->getModel() );
2781                 }
2782                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2783
2784
2785 //EED004
2786
2787                 int iContourGroup,sizeContourGroup;
2788                 if (typeContourGroup==3) // contour separete
2789                 {
2790                         sizeContourGroup=lstManConModExp.size();
2791                 } else {  // contour AND OR XOR
2792                         sizeContourGroup=1;
2793                 }
2794
2795                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2796                         lstManConModTmp.clear();
2797                         if (typeContourGroup==3) // contour separete
2798                         {
2799                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2800                         } else {  // contour AND OR XOR
2801                                 lstManConModTmp = lstManConModExp;
2802                         }
2803
2804                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2805
2806                         pLstValue.clear();
2807                         pLstValuePosX.clear();
2808                         pLstValuePosY.clear();
2809                         pLstValuePosZ.clear();
2810                         int numberOfPixels;
2811                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2812                                                                                                                 &pLstValue,
2813                                                                                                                 &pLstValuePosX,
2814                                                                                                                 &pLstValuePosY,
2815                                                                                                                 &pLstValuePosZ);
2816
2817                         std::string temp = directory + "/" + namefile + "-slice";
2818                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2819                         temp = temp + ".txt";
2820
2821                         // LG 14/01/09 : using crea
2822                         wxString filename = crea::std2wx(temp);
2823                         /*filename.Printf(_T("%s"),directory.c_str());
2824                         filename.append(_T("\\"));
2825                         filename.append(_T("%s"),namefile.c_str());
2826                         filename.append(_T("-slice"));
2827                         filename.append(_T("%d"),z);
2828                         filename.append(_T("-cont"));
2829                         filename.append(_T("%d"),iContourGroup);
2830                         filename.append(_T(".txt"));*/
2831                         //                      filename.Printf(temp.c_str());
2832
2833
2834
2835                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2836                         fprintf(pFile,"value \t x \t y \t z\n"  );
2837                         int iLstValue,sizeLstValue=pLstValue.size();
2838                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2839                         {
2840                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2841                         }
2842                         fclose(pFile);
2843                 } // for  iContourGroup
2844         } // for z
2845         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2846         //_staticTextInformation->SetLabel( _T("") );
2847
2848 }
2849
2850 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2851         wxBusyCursor wait;
2852
2853         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2854         if (typeContourGroup==3)
2855         {
2856                 typeContourGroup=1;
2857         }
2858         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2859
2860         std::vector<manualBaseModel*> lstManConMod;
2861         std::vector<manualBaseModel*> lstManConModTmp;
2862         std::vector<manualBaseModel*> lstManConModExp;
2863
2864         std::vector<int> tempVector;
2865         _instantPanel->getInstant( tempVector );
2866
2867     vtkImageData *imagedata = _theViewPanel->getImageData();
2868         int ext[6];
2869         imagedata->GetExtent(ext);
2870         int sizeZimage = ext[5]-ext[4]+1;
2871         int z;
2872         int ii,sizeLstContourThings;
2873
2874         double totalZ;
2875         double porcent;
2876
2877         wxString tmpString;
2878
2879
2880         if (selection==0 ) // actual slice
2881         {
2882                 int actualSlice = tempVector[1];
2883                 minZ    = actualSlice;
2884                 maxZ    = actualSlice;
2885         }
2886
2887         totalZ  = maxZ-minZ;
2888
2889
2890         // cleanning image before range
2891         for (z=0; z<minZ; z++){
2892                 _contourextractdata->ResetImageResult(z);
2893         }
2894         // cleanning image after range
2895         for (z=maxZ+1; z<sizeZimage; z++){
2896                 _contourextractdata->ResetImageResult(z);
2897         }
2898
2899
2900 // For each slice..
2901         for ( z=minZ ; z<=maxZ ; z++)
2902         {
2903
2904                 porcent = 100.0* (z-minZ)/totalZ;
2905                 tmpString.Printf(_T("Saving Values"));
2906                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2907                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2908
2909                 //Extraction data from contours of each slice
2910                 _contourextractdata->SetZtoBeAnalys( z);
2911
2912                 tempVector[1]=z;
2913                 Instant instant(&tempVector);
2914                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2915                 sizeLstContourThings = lstContourThings.size();
2916
2917                 lstManConMod.clear();
2918                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2919                 {
2920                         ContourThing **contourthing = lstContourThings[ii];
2921                         lstManConMod.push_back( (*contourthing)->getModel() );
2922                 }
2923                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2924
2925
2926                 int iContourGroup,sizeContourGroup;
2927                 if (typeContourGroup==3) // contour separete
2928                 {
2929                         sizeContourGroup=lstManConModExp.size();
2930                 } else {  // contour AND OR XOR
2931                         sizeContourGroup=1;
2932                 }
2933
2934                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2935                         lstManConModTmp.clear();
2936                         if (typeContourGroup==3) // contour separete
2937                         {
2938                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2939                         } else {  // contour AND OR XOR
2940                                 lstManConModTmp = lstManConModExp;
2941                         }
2942
2943                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2944                         _contourextractdata->CalculateImageResult(); // with actual Z
2945
2946                 } // for  iContourGroup
2947         } // for z
2948
2949         (*value) = _contourextractdata->GetVtkImageValueResult();
2950         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
2951
2952 }
2953
2954 std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
2955 {
2956         std::string result="";
2957         if ( image->GetScalarType()==VTK_CHAR )
2958         {
2959                 result="CHAR";
2960         } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
2961                 result="UCHAR";
2962         } else if ( image->GetScalarType()==VTK_FLOAT ){
2963                 result="FLOAT";
2964         } else if ( image->GetScalarType()==VTK_DOUBLE ){
2965                 result="DOUBLE";
2966         } else if ( image->GetScalarType()==VTK_INT ){
2967                 result="INT";
2968         } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
2969                 result="UINT";
2970         } else if ( image->GetScalarType()==VTK_SHORT ){
2971                 result="SHORT";
2972         } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
2973                 result="USHORT";
2974         } else if ( image->GetScalarType()==VTK_LONG ){
2975                 result="LONG";
2976         } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
2977                 result="ULONG";
2978         }
2979         return result;
2980 }
2981
2982 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2983 {
2984         std::string stringType;
2985         double spc[3];
2986         kernelManager->GetSpacing(spc,0);   // returns the spacing of the first image
2987         stringType              = GetStringTypeImage(value);
2988         std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
2989
2990         wxString filename = crea::std2wx(temp);
2991
2992 // Image Value
2993
2994         vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
2995 //EED 2017-01-01 Migration VTK7
2996 #if VTK_MAJOR_VERSION <= 5
2997         valueChInfo->SetInput(value);
2998 #else
2999         valueChInfo->SetInputData(value);
3000 #endif
3001         valueChInfo->SetSpacingScale(spc);
3002         valueChInfo->Update();
3003         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3004
3005 //EED 2017-01-01 Migration VTK7
3006 #if VTK_MAJOR_VERSION <= 5
3007         writerValueImage->SetInput( valueChInfo->GetOutput() );
3008 #else
3009         writerValueImage->SetInputData( valueChInfo->GetOutput() );
3010 #endif
3011         writerValueImage->SetFileName( (const char *)filename.mb_str() );
3012         writerValueImage->SetFileDimensionality( 3 );
3013         writerValueImage->SetCompression(false);
3014         writerValueImage->Write( );
3015
3016 // Image Mask
3017         stringType              = GetStringTypeImage(mask);
3018         temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
3019
3020         // LG 14/01/09 : using crea
3021         filename = crea::std2wx(temp);
3022         //      filename.Printf(_T(temp.c_str()));
3023
3024
3025         vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3026 //EED 2017-01-01 Migration VTK7
3027 #if VTK_MAJOR_VERSION <= 5
3028         maskChInfo->SetInput(mask);
3029 #else
3030         maskChInfo->SetInputData(mask);
3031 #endif
3032         maskChInfo->SetSpacingScale(spc);
3033         maskChInfo->Update();
3034         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3035
3036 //EED 2017-01-01 Migration VTK7
3037 #if VTK_MAJOR_VERSION <= 5
3038         writerMaskImage->SetInput( maskChInfo->GetOutput() );
3039 #else
3040         writerMaskImage->SetInputData( maskChInfo->GetOutput() );
3041 #endif
3042
3043         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3044         writerMaskImage->SetFileDimensionality( 3 );
3045         writerMaskImage->SetCompression(false);
3046         writerMaskImage->Write( );
3047
3048         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3049
3050 }
3051
3052
3053
3054 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3055         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3056                 _theViewPanel->setActualVertical( value);
3057         }
3058         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
3059                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3060         }
3061
3062         changeInstant();
3063 }
3064
3065 void wxContourMainFrame::onSnakePressed(){
3066         std::vector<double> vecX;
3067         std::vector<double> vecY;
3068         std::vector<double> vecZ;
3069         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3070
3071         if (vecX.size()!=0){
3072                 std::vector<int> tempVector;
3073                 _instantPanel->getInstant( tempVector );
3074                 int i,size=vecZ.size();
3075                 int actualSlice = tempVector[1];
3076                 for ( i=0 ; i<size ; i++ )
3077                 {
3078                         vecZ[i] = actualSlice;
3079                 } // for
3080
3081                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3082                 wxPanel* panel = new wxPanel(dialog,-1);
3083                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3084          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3085                 dialog->ShowModal();
3086         } // if
3087
3088 }
3089
3090 void wxContourMainFrame::saveFileWithContoursAutomatique()
3091 {
3092 printf("EED wxContourMainFrame::saveFileWithContoursAutomatique \n");
3093         std::string filename = kernelManager->getCurrentFileName();
3094         if(filename.compare("")!=0){
3095                 saveFileWithContours(filename);
3096         }else{
3097                 onSave();
3098         }
3099 }
3100 void wxContourMainFrame::ShowToolsPanel(bool show)
3101 {
3102         _pannew->Show(show);
3103 }
3104
3105
3106
3107 void wxContourMainFrame::SetContourGroup(int contourGroup)
3108 {
3109         _contourGroup = contourGroup;
3110 }
3111
3112
3113 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3114 {
3115
3116         if      (_viewMaskImagePanel==NULL)
3117         {
3118                 _contourextractdata = new ContourExtractData(true);
3119                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3120 //              double range[2];
3121 //              _theViewPanel->getImageData()->GetScalarRange(range);
3122                 //int min = (int)floor (range[0]);
3123                 //int max = (int)ceil (range[1]);
3124
3125 //EED 2017-12-17
3126                 int min = 254;
3127                 int max = 256;
3128
3129                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1,  0);
3130                 _viewMaskImage = new ThresholdImageView();
3131                 _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
3132                 _viewMaskImage->SetminMaxValue( min, max);
3133                 _viewMaskImage->SetBaseColor( 0,0,1 );
3134
3135
3136                 std::vector<int> colorbarposition;
3137                 colorbarposition.push_back( -999 );
3138                 colorbarposition.push_back( -999 );
3139                 _viewMaskImage->SetColorBarPosition( colorbarposition );
3140                 double spc[3];
3141                 _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3142                 _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3143
3144                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3145                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3146                 _viewMaskImage->onThresholdChangeOpacity( 25 );
3147         }
3148         return _viewMaskImagePanel;
3149 }
3150
3151
3152 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3153 {
3154         if      (_viewColorLayerImagePanel==NULL)
3155         {
3156                 double range[2];
3157                 _theViewPanel->getImageData()->GetScalarRange(range);
3158                 int min = (int)floor (range[0]);
3159                 int max = (int)ceil (range[1]);
3160                 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
3161                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
3162         //    std::vector<double> range = bbGetInputlstRangeForColorBar();
3163         //    clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
3164                 std::vector<int> colorbarposition;
3165                 colorbarposition.push_back( 50 );
3166                 colorbarposition.push_back( 105 );
3167                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
3168         //    std::vector<double> base_color;
3169         //    _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
3170         //    std::vector<double> grey_level_boundaries;
3171         //    clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
3172                 std::vector<double> transparence_level_boundaries;
3173                 transparence_level_boundaries.push_back(0);
3174                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
3175                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
3176 //              _viewColorLayerImagePanel->SetFittingMode( 3 );
3177         }
3178         return _viewColorLayerImagePanel;
3179 }
3180
3181
3182 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3183 {
3184         if      (_viewThresholdImagePanel==NULL)
3185         {
3186                 double range[2];
3187                 _theViewPanel->getImageData()->GetScalarRange(range);
3188                 int min = (int)floor (range[0]);
3189                 int max = (int)ceil (range[1]);
3190                 int start= (max+min)/2 - (max-min)*0.25;
3191                 int end= (max+min)/2 + (max-min)*0.25;
3192                 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
3193                 _viewThresholdImage = new ThresholdImageView();
3194                 _viewThresholdImage->SetminMaxValue(start,end);
3195                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3196                 std::vector<int> colorbarposition;
3197                 colorbarposition.push_back( 10 );
3198                 colorbarposition.push_back( 105 );
3199                 _viewThresholdImage->SetColorBarPosition( colorbarposition );
3200                 double spc[3];
3201                 _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3202                 _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3203
3204                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3205                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3206                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3207                 _viewThresholdImage->onThresholdChangeOpacity( 25 );
3208                 RefreshInterface();
3209         }
3210         return _viewThresholdImagePanel;
3211 }
3212
3213 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3214 int wxContourMainFrame::getType ()
3215 {
3216         int tipo = 0;
3217         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3218
3219         if(!currentSelection.empty())
3220         {
3221                 std::string cloneName = currentSelection [0];
3222                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3223                 tipo = manualModel-> GetTypeModel();
3224         }
3225         return tipo;
3226 }
3227
3228 double wxContourMainFrame::getContourSizeInPixels()
3229 {
3230         double contourSize = 0;
3231
3232         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3233         if(!currentSelection.empty())
3234         {
3235                 std::string cloneName = currentSelection [0];
3236
3237                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3238
3239 // EED 2017-05-30
3240 //              contourSize = manualModel->GetPathSize();
3241                 double spc[3];
3242                 spc[0]=1;
3243                 spc[1]=1;
3244                 spc[2]=1;
3245                 contourSize = manualModel->GetPathSize( spc );
3246         }
3247         return contourSize;
3248 }
3249
3250 manualBaseModel * wxContourMainFrame::getContour ()
3251 {
3252         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3253
3254         if(!currentSelection.empty())
3255         {
3256                 std::string cloneName = currentSelection [0];
3257                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3258                 return manualModel;
3259         }
3260         return NULL;
3261 }
3262 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3263 {
3264         std::string labelAscii(label.ToAscii());
3265         int pos = labelAscii.find(" ");
3266
3267         int j;
3268
3269         for (j=0 ; pos != string::npos;j++)
3270         {
3271                 labelAscii.replace( pos, 1, "_" );
3272                 pos= labelAscii.find(" ");
3273         }
3274
3275         manualModel -> SetLabel(labelAscii);
3276 }
3277 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3278 {
3279 // EED 2017-05-30
3280 //      double sizeInPixel      = manualModel ->GetPathSize(  );
3281         double spc[3];
3282         spc[0]=1; // ????
3283         spc[1]=1; // ????
3284         spc[2]=1; // ????
3285         double sizeInPixel      = manualModel ->GetPathSize( spc );
3286
3287         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3288         double realContourSize  = sizeInPixel*onePixelRealSize;
3289         manualModel ->SetRealSize(realContourSize);
3290 }
3291
3292 double wxContourMainFrame::onePixelSize( double value)
3293 {
3294         return _onePixelSize = value;
3295 }
3296
3297 std::string wxContourMainFrame::GetFileLocation()
3298 {
3299         return _fileLocation;
3300 }
3301
3302 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3303 {
3304         _fileLocation = newFileLocation;
3305         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3306
3307 //EED 2019-12-17
3308         kernelManager->setCurrentFileName(_fileLocation);
3309 }
3310 //------------------------------------------------------------------------------------------------------------
3311
3312
3313
3314
3315
3316
3317
3318
3319 void wxContourMainFrame::FlipSelectedContours(int flipDirection)
3320 {
3321         FlipLstOfContours(
3322                             (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
3323                             flipDirection
3324                           );
3325
3326 }
3327
3328 void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
3329 {
3330         FlipLstOfContours(
3331                             (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
3332                             flipDirection
3333                           );
3334 }
3335
3336 void wxContourMainFrame::FlipAllContours(int flipDirection)
3337 {
3338         FlipLstOfContours(
3339                             kernelManager->GetLstNameThings() ,
3340                             flipDirection
3341                           );
3342 }
3343
3344 void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
3345 {
3346         int ext[6];
3347         getImageData()->GetExtent(ext);
3348         int sizeX = ext[1]-ext[0];
3349         int sizeY = ext[3]-ext[2];
3350
3351
3352         int i,sizeLstNameThings;
3353         int ii,sizeLstPoints;
3354
3355         sizeLstNameThings       = lstNameThings.size();
3356         for (i=0 ; i<sizeLstNameThings ; i++)
3357         {
3358                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3359                 if (flipDirection==0)
3360                 {
3361                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3362                 } else {
3363                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3364                 }
3365         }// for i  list of Things
3366
3367         //-- Static Contours
3368
3369         lstNameThings           = kernelManager->GetLstNameThingsStatic();
3370         sizeLstNameThings       = lstNameThings.size();
3371         for (i=0 ; i<sizeLstNameThings ; i++)
3372         {
3373                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3374                 if (flipDirection==0)
3375                 {
3376                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3377                 } else {
3378                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3379                 }
3380         }// for i  list of static things
3381 }
3382
3383 void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
3384 {
3385         saveState();
3386
3387         if (typeContourFlip==0) //
3388         {
3389                 FlipSelectedContours(flipDirection);
3390         }
3391
3392         if (typeContourFlip==1) //
3393         {
3394                 FlipActualSliceContours(flipDirection);
3395         }
3396
3397         if (typeContourFlip==2) //
3398         {
3399                 FlipAllContours(flipDirection);
3400         }
3401         RefreshInterface();
3402 }
3403
3404 void wxContourMainFrame::SetXY(int x, int y)
3405 {
3406         _theViewPanel->SetXY(x,y);
3407 }
3408
3409
3410
3411