1 //----------------------------------------------------------------------------------------------------------------
2 // Class definition include
3 //----------------------------------------------------------------------------------------------------------------
4 #include "wxContourMainFrame.h"
8 //----------------------------------------------------------------------------------------------------------------
10 //----------------------------------------------------------------------------------------------------------------
13 #include "NameWrapper.h"
14 #include "wx/artprov.h"
15 #include "ConceptDataWrap.h"
21 //----------------------------------------------------------------------------------------------------------------
22 // Class implementation
23 //----------------------------------------------------------------------------------------------------------------
24 /** @file wxContourMainFrame.cxx */
26 //------------------------------------------------------------------------------------------------------------
27 // Constructors & Destructors
28 //------------------------------------------------------------------------------------------------------------
30 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
31 char wxContourMainFrame::COPY = 'C';
33 wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
34 //: wxPanel(parent, id, title, pos, size, style)
35 //: wxWindow(parent, id, pos, size, style)
36 : wxPanel(parent, id, pos, size, style)
38 m_mgr.SetManagedWindow(this);
40 _creatingContoursActive = false;
42 // _modelManager = NULL;
44 // _buttonsBar = NULL;
46 // _drawToolsPanel = NULL;
47 // _operationsToolsPanel = NULL;
48 //_autoFormsPanel = NULL;
49 // _standardToolsPanel = NULL;
50 // _editionToolsPanel = NULL;
51 // _listViewPanel = NULL;
52 // _sceneManager = NULL;
53 //_actualInstant = NULL;
54 _numberOfVariablesStatistics = 6+1;
56 _refLineControl = NULL;
59 // _actorPresent = false;
61 // set up default notebook style
62 // m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
63 // m_notebook_theme = 0;
64 //wxContour_ActionCommandsID a;
66 _contourextractdata = NULL;
67 _viewMaskImage = NULL;
68 _viewMaskImagePanel = NULL;
69 _viewThresholdImage = NULL;
70 _viewThresholdImagePanel = NULL;
71 _viewColorLayerImage = NULL;
72 _viewColorLayerImagePanel = NULL;
75 wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
76 : wxPanel(parent, id, pos, size, style)
78 m_mgr.SetManagedWindow(this);
80 _creatingContoursActive = false;
84 _refLineControl = NULL;
87 // _actorPresent = false;
88 _viewMaskImage = NULL;
89 _viewMaskImagePanel = NULL;
90 _viewThresholdImage = NULL;
91 _viewThresholdImagePanel = NULL;
92 _viewColorLayerImage = NULL;
93 _viewColorLayerImagePanel = NULL;
95 // set up default notebook style
96 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
98 //wxContour_ActionCommandsID a;
99 _numberOfVariablesStatistics = 7;
107 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
108 _performingOperation = new PerformingOperation();
110 if(images.size() > 0)
112 this->setVectImages(images);
115 _contourextractdata = NULL;
118 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
123 #if defined(__GNUC__)
124 std::string str_home(getenv("HOME"));
125 #elif defined(_WIN32)
126 std::string str_home(getenv("USERPROFILE"));
128 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
130 std::vector<std::string> conceptNameVect;
131 std::vector<int> conceptSizeVect;
133 notebook = this->createNotebook();
136 kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
139 _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
140 _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
142 //-------------------------------------------------------------
143 kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
144 _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
147 double val = _theViewPanel->getCurrentDeep();
148 _instantPanel->setConceptValue( "Axe Depth", (int)val );
149 //JCP _instantPanel->setConceptValue("time", num de imagenes);
150 ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
151 //*******************changeInstant();
152 _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
154 this->configurePanels( );
159 wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
161 if(instance == NULL){
162 instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
167 std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
169 return kernelManager->getVectImages();
172 wxContourMainFrame* wxContourMainFrame :: getInstance()
177 void wxContourMainFrame :: resetInstance()
182 wxContourMainFrame :: ~wxContourMainFrame()
184 delete _contourextractdata;
187 interfMainPanel::resetInstance();
188 delete kernelManager;
190 //_pannew->Destroy();
196 //El problema al cerrar la aplicacion puede estar asociado
197 //a que wxAUINotebook esta en la aplicacion
198 //principal (wxContourGUIExample)tambien
199 //EED???? delete _theViewPanel;
200 //EED???? delete _instantPanel;
201 //EED???? delete _buttonsBar;
202 //EED???? delete _actualInstant;
203 //EED???? delete _sceneManager;
207 //------------------------------------------------------------------------------------------------------------
208 // Creational and initialization methods using WxAui
209 //------------------------------------------------------------------------------------------------------------
211 wxAuiNotebook * wxContourMainFrame :: createNotebook()
213 wxSize client_size = GetClientSize();
214 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
215 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
220 //------------------------------------------------------------------------------------------------------------
221 // Creational and initialization methods
222 //------------------------------------------------------------------------------------------------------------
223 bool wxContourMainFrame :: configurePanels( )
225 bool configured = _theViewPanel!=NULL;
227 configured &= _theViewPanel!=NULL;
228 if( _theViewPanel!=NULL )
230 notebook->AddPage( _theViewPanel, wxT(" View ") );
237 notebook->AddPage( _instantPanel, wxT("Instant Page") );
241 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
244 SetMinSize(wxSize(300,300));
250 bool wxContourMainFrame::addNewPanel(wxPanel* panel)
252 bool configured = panel!=NULL;
253 configured &= panel!=NULL;
257 notebook->AddPage( panel, wxT(" Viewer "), true );
263 //------------------------------------------------------------------------------------------------------------
264 // Attributes getters and setters
265 //------------------------------------------------------------------------------------------------------------
269 void wxContourMainFrame :: setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel )
271 _instantPanel = theInstantChooserPanel;
274 // void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
276 // _buttonsBar = theButtonsBar;
279 // void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
281 // _gridPanel = theGridPanel;
284 // void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
286 // _drawToolsPanel = theDrawToolsPanel;
289 // void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
291 // _operationsToolsPanel = theOperationsToolsPanel;
294 // void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
296 // _autoFormsPanel = theAutoFormsPanel;
299 // void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
301 // _standardToolsPanel= theStandardToolsPanel;
304 // void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
306 // _editionToolsPanel = theEditionToolsPanel;
309 // void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
311 // _listViewPanel = theListViewPanel;
316 void wxContourMainFrame::onCreateContourSpline( ){
318 //JCP 20-10-08 Undo redo implementation
320 //JCP 20-10-08 Undo redo implementation
324 void wxContourMainFrame::onCreateContourRectangle( ){
325 //JCP 20-10-08 Undo redo implementation
327 //JCP 20-10-08 Undo redo implementation
330 void wxContourMainFrame::onCreateContourCircle( ){
331 //JCP 20-10-08 Undo redo implementation
333 //JCP 20-10-08 Undo redo implementation
337 void wxContourMainFrame::onCreateContourLine( ){
338 //JCP 20-10-08 Undo redo implementation
340 //JCP 20-10-08 Undo redo implementation
344 // RaC 09-09 --------------------------------------
345 void wxContourMainFrame::onCreateContourPoints( ){
346 //JCP 20-10-08 Undo redo implementation
348 //JCP 20-10-08 Undo redo implementation
351 // RaC 09-09 --------------------------------------
353 // RaC 10-09 --------------------------------------
354 void wxContourMainFrame::onCreateContourPolygon( ){
355 //JCP 20-10-08 Undo redo implementation
357 //JCP 20-10-08 Undo redo implementation
360 // RaC 10-09 --------------------------------------
362 //------------------------------------------------------------------------------------------------------------
364 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
366 //Creating the manualBaseModel and including in the model
367 manualBaseModel * manModelContour = factoryManualContourModel(panel );
369 std::vector<int> instantVector;
370 _instantPanel->getInstant( instantVector );
371 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
373 /*std::vector<int> instantVector;
374 _instantPanel->getInstant( instantVector );
376 theName= _modelManager->createOutline( manModelContour, instantVector );*/
377 bool addedModel = theName.compare("") != 0;//??
381 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
382 _theViewPanel->getSpacing(spc);
383 //Adding the manualContourControler to interface objects structure
384 //Adding the manualViewContour to interface objects structure
385 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
386 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
389 void wxContourMainFrame :: createContour( int typeContour )
391 //Creating the manualContourModel and including in the model
392 manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
394 std::vector<int> instantVector;
395 _instantPanel->getInstant( instantVector );
396 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
398 /*std::vector<int> instantVector;
399 _instantPanel->getInstant( instantVector );
401 theName= _modelManager->createOutline( manModelContour, instantVector );*/
402 bool addedModel = theName.compare("") != 0;//??
405 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
406 _theViewPanel->getSpacing(spc);
407 //Adding the manualContourControler to interface objects structure
408 //Adding the manualViewContour to interface objects structure
409 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
410 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
414 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
416 manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
417 manualBaseModel *manModelContour=NULL;
418 manModelContour = manModelContourBullEye;
420 int iCrown,sizeCrowns,iSector,sizeSectors;
421 double radioA,radioB,ang,angDelta ;
422 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
423 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
425 sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
426 radioB = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
427 if (iCrown==sizeCrowns-1)
431 radioA = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
435 for ( iSector=0 ; iSector<sizeSectors ; iSector++ )
437 ang = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
438 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
439 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
442 } // if _panelBullEyeOptions
444 return manModelContour;
446 void wxContourMainFrame :: saveState(){
448 std::string temp = kernelManager->saveState();
449 saveFileWithContours(temp);
452 void wxContourMainFrame::onDeleteContour(){
453 //JCP 20-10-08 Undo redo implementation
455 //JCP 20-10-08 Undo redo implementation
457 std::vector<std::string> lstKeyNameToBeErase;
458 lstKeyNameToBeErase = _theViewPanel->getSceneManager()->getSelectedObjects();
459 deleteContours( lstKeyNameToBeErase );
461 int i,size=_sceneManager->getSelectedObjects().size();
464 std::string keyName = _sceneManager->getSelectedObjects()[i];
465 int ispartofstaticlist = this->_modelManager->IsPartOfStaticList( keyName );
466 if ( ispartofstaticlist>=0 )
468 std::vector<int> tempVector;
469 _instantPanel->getInstant( tempVector );
470 Instant instant(&tempVector);
471 this->_modelManager->ChangeContourOfList(keyName, &instant);
475 std::vector<std::string> lstKeyName;
476 std::vector<std::string> lstKeyNameActualSlice;
477 std::vector<std::string> lstKeyNameToBeErase;
479 lstKeyNameToBeErase = _sceneManager->getSelectedObjects();
480 lstKeyNameActualSlice = _sceneManager->GetlstContoursNameActualSlice();
481 int k,kSize=lstKeyNameToBeErase.size();
482 int j,jSize=lstKeyNameActualSlice.size();
484 for (k=0;k<kSize; k++)
487 for (j=0;j<jSize; j++)
489 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
496 lstKeyName.push_back( lstKeyNameToBeErase[k] );
500 deleteContours( lstKeyName );
504 void wxContourMainFrame :: deleteContours( std::vector<std::string> keyNamesVector )
506 int i,size=keyNamesVector.size();
509 deleteContour( keyNamesVector[i] );
513 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
515 manualContourModel * cModel;
516 manualViewBaseContour * cViewer;
517 manualContourBaseControler * cControler;
519 ContourWrap_ViewControl *conwrapviewControl = _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
520 cControler = conwrapviewControl->getControler();*/
523 bool isedit = _theViewPanel->isEditableCControler(theKeyName);
524 bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
526 if (isedit && ispartofstaticlst)
528 _theViewPanel->removeFromScene(theKeyName);
530 kernelManager->deleteCModel(theKeyName);
531 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
532 //cViewer = conwrapviewControl->getViewer();
533 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
534 //cControler* conwrapviewControl->getControler();
537 // delete cControler;
542 void wxContourMainFrame::onDeleteContoursActSlice(){
543 //JCP 20-10-08 Undo redo implementation
545 //JCP 20-10-08 Undo redo implementation
546 deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
548 void wxContourMainFrame::onDeleteAllContours(){
549 //JCP 20-10-08 Undo redo implementation
553 void wxContourMainFrame::deleteAllContours(){
554 //JCP 20-10-08 Undo redo implementation
557 std::vector<int> tempVector;
558 _instantPanel->getInstant( tempVector );
560 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
561 // the values in GetStart and GetEnd will then not be initialize also.
562 // We use instead the values given when initializing the _deletepanel.
564 //int minZ = _mbarrangeDeleteAll->GetStart();
565 //int maxZ = _mbarrangeDeleteAll->GetEnd();
569 maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
573 _theViewPanel->getSceneManager()->removeSceneContours( );
574 _theViewPanel->getSceneManager()->removeAllOutlines();
575 kernelManager->removeAllOutlines();
578 if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
580 _theViewPanel->getSceneManager()->removeSceneContours( );
581 _modelManager->removeAllOutlines();
582 _theViewPanel->getSceneManager()->removeAllOutlines();
585 for ( z=minZ ; z<=maxZ ; z++)
588 Instant instant(&tempVector);
589 std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
591 sizeLstContourThings = lstContourThings.size();
592 for (ii=0 ; ii<sizeLstContourThings ; ii++)
594 ContourThing **contourthing = lstContourThings[ii];
595 deleteContour( (*contourthing)->getName() );
602 void wxContourMainFrame::setConceptValue( std::string name, int value ){
603 _instantPanel->setConceptValue(name, value);
607 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
608 return _instantPanel->getLastConceptData();
612 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
613 return _instantPanel->getIfConceptCheckedAt( name, pos );
618 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
621 vtkImageData * value;
622 this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
624 std::vector<int> nTypeView;
625 nTypeView.push_back(5);
626 nTypeView.push_back(1);
627 nTypeView.push_back(2);
628 nTypeView.push_back(0);
630 wxFrame *frame = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
631 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
632 m_mgr_noteBookViewerResult->SetManagedWindow(frame);
634 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(frame, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
635 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
637 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
638 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
641 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
642 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
643 m_mgr_noteBookViewerResult->Update();
650 void wxContourMainFrame::changeInstant()
652 std::vector<int> instantVect;
653 _instantPanel->getInstant( instantVect );
654 int actualSlice = instantVect[1];
656 kernelManager->setInstant(instantVect);
658 // Refresh Mask image
659 if(_viewMaskImage!=NULL){
660 _viewMaskImage->SetZ(actualSlice);
661 if (_viewMaskImagePanel->IsVisible()==true)
663 vtkImageData *mask, *value;
664 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
665 _viewMaskImage->onThreshold();
669 // Refresh Threshold image
670 if(_viewThresholdImage!=NULL){
671 _viewThresholdImage->SetZ(actualSlice);
672 if (_viewThresholdImagePanel->IsVisible()==true){
673 _viewThresholdImage->onThreshold();
677 // Refresh Threshold image
678 if(_viewColorLayerImage!=NULL){
679 _viewColorLayerImage->SetZ(actualSlice);
680 if (_viewColorLayerImagePanel->IsVisible()==true){
681 _viewColorLayerImage->onThreshold();
685 updateInstantOutlines();
686 updateInstantImageData();
692 void wxContourMainFrame :: updateInstantOutlines()
694 _theViewPanel->removeSceneContours();
695 _theViewPanel->addNameWrapperToScene();
697 //for( int i=0; i<size; i++)
699 // _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
703 int wxContourMainFrame::getNamesWrappingSize(){
704 return kernelManager->getNamesWrappingSize();
706 std::string wxContourMainFrame::getNameWrapping(int i){
707 return kernelManager->getNameWrapping(i);
710 void wxContourMainFrame::updateInstantImageData()
712 std::vector<int> inst;
713 _instantPanel->getInstant(inst);
715 vtkImageData* img = kernelManager->getImageAtInstant(inst);
717 _theViewPanel->changeImage(img);
720 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
721 _theViewPanel->setImageSlice(z);
725 void wxContourMainFrame::updateInstantAxes()
730 void wxContourMainFrame::onChangeDeep(int val){
731 _instantPanel->setConceptValue( "Axe Depth", (int)val );
736 void wxContourMainFrame::onCopy(){
737 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
739 std::vector<int> tempVector;
740 _instantPanel->getInstant( tempVector );
741 _performingOperation->reset();
742 _performingOperation->setStartCommand( COPY );
743 _performingOperation->setStartOperationInstantVector( tempVector );
744 _performingOperation->setKeyNamesOperationElems( currentSelection );
747 void wxContourMainFrame::onPaste(){
750 char theStartCommand = _performingOperation->getStartCommand();
751 if ( theStartCommand == COPY )
753 //JCP 20-10-08 Undo redo implementation
755 //JCP 20-10-08 Undo redo implementation
756 std::vector<int> tempVector;
757 _instantPanel->getInstant( tempVector );
758 _performingOperation->setEndOperationInstantVector ( tempVector );
759 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
760 int i,size = elems.size();
761 for( i=0; i<size; i++ )
763 createCopyContourOf( elems[i], tempVector, i>0 );
767 void wxContourMainFrame::onUndo(){
768 std::string filename;
769 if(kernelManager->onUndoSaveFile(filename)){
770 saveFileWithContours(filename);
772 if(kernelManager->onUndo(filename)){
776 void wxContourMainFrame::onRedo(){
777 std::string filename;
778 if(kernelManager->onRedo(filename)){
783 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
785 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
786 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
787 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
790 ///AD: 03-09 Copy the object and apply the given transformation
791 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
793 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
794 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
796 manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
797 manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
799 double pnt1X = refPoint1->GetX();
800 double pnt1Y = refPoint1->GetY();
801 // double pnt1Z = refPoint1->GetZ();
802 double pnt2X = refPoint2->GetX();
803 double pnt2Y = refPoint2->GetY();
804 // double pnt2Z = refPoint2->GetZ();
806 double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
807 vtkTransform *t = vtkTransform::New();
811 t->Translate(-pnt1X, -pnt1Y, 0);
815 t->Translate(pnt1X, pnt1Y, 0);
818 int i,size=manualModel->GetSizeLstPoints();
821 manualPoint * mp = manualModel->GetManualPoint(i);
827 t->TransformPoint( vecIn, vecOut );
828 mp->SetPointX( vecOut[0] );
829 mp->SetPointY( vecOut[1] );
830 mp->SetPointZ( vecOut[2] );
833 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
836 void wxContourMainFrame ::loadState(std::string filename){
838 FILE *pFile=fopen(filename.c_str(),"r+");
840 fscanf(pFile,"%s",tmp); // --CreaContour--
842 fscanf(pFile,"%s",tmp); // Version
843 fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
847 loadContours(pFile, false);
848 loadContours(pFile, true);
853 void wxContourMainFrame ::loadContours( FILE *pFile, bool staticContour )
857 fscanf(pFile,"%s",tmp); // ImageDimensions
858 fscanf(pFile,"%s",tmp); // X
859 fscanf(pFile,"%s",tmp); // Y
860 fscanf(pFile,"%s",tmp); // Z
862 fscanf(pFile,"%s",tmp); // ImageSpacing
863 fscanf(pFile,"%s",tmp); // X
864 fscanf(pFile,"%s",tmp); // Y
865 fscanf(pFile,"%s",tmp); // Z
867 fscanf(pFile,"%s",tmp); // NumberOfContours
868 fscanf(pFile,"%s",tmp); // ##
869 int numberOfContours = atoi(tmp);
871 std::vector<int> instantVector;
872 int typeContourModel;
873 manualBaseModel *manModelContour;
877 for (i=0;i<numberOfContours;i++)
879 instantVector.clear();
880 fscanf(pFile,"%s",tmp); // Instant
881 fscanf(pFile,"%s",tmp); // 1
882 instantVector.push_back( atoi(tmp) );
883 fscanf(pFile,"%s",tmp); // 2
884 instantVector.push_back( atoi(tmp) );
885 fscanf(pFile,"%s",tmp); // 3
886 instantVector.push_back( atoi(tmp) );
887 fscanf(pFile,"%s",tmp); // 4
888 instantVector.push_back( atoi(tmp) );
889 fscanf(pFile,"%s",tmp); // 5
890 instantVector.push_back( atoi(tmp) );
891 fscanf(pFile,"%s",tmp); // 6
892 instantVector.push_back( atoi(tmp) );
894 fscanf(pFile,"%s",tmp); // TypeContourModel
895 fscanf(pFile,"%s",tmp); // ##
896 typeContourModel = atoi(tmp);
898 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
899 manModelContour->Open(pFile);
901 fscanf(pFile,"%s",tmp); // TypeView
902 fscanf(pFile,"%s",tmp); // ##
903 typeView = atoi(tmp);
906 theName = kernelManager->createOutline( manModelContour, instantVector );
907 bool addedModel = theName.compare("") != 0;
910 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
911 _theViewPanel->getSpacing(spc);
912 //Adding the manualContourControler to interface objects structure
913 //Adding the manualViewContour to interface objects structure
914 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
915 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
918 if (staticContour==true)
920 Instant instant(&instantVector);
921 kernelManager->changeContourOfManager( theName , &instant );
923 }// for numberOfContours
926 void wxContourMainFrame::onLoad()
928 std::string fileNameContourROI = GetFileLocation();
929 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
930 if(GetFileLocation().empty())
932 //------------------------------------------------------------------------------------------------------------
933 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
934 if (dialog.ShowModal() == wxID_OK)
936 fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
940 onLoadContours(fileNameContourROI);
943 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI){
947 FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
950 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
953 //------------------------------------------------------------------------------------------------------------
954 fileNameContourROI.append("data");
955 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
956 if(pFileData != NULL)
958 fscanf(pFileData,"%s",tmpD); // --CreaContour--
959 fscanf(pFileData,"%s",tmpD); // Version
960 fscanf(pFileData,"%s",tmpD); // 1.0.2 || 1.0.1 || 1.0.0
962 fscanf(pFileData,"%s",tmpD); // onePixelSize
963 fscanf(pFileData,"%s",tmpD); // #
964 _onePixelSize = atof(tmpD);
965 fscanf(pFileData,"%s",tmpD); // NumberOfContours
966 fscanf(pFileData,"%s",tmpD); // #
969 fscanf(pFile,"%s",tmp); // --CreaContour--
971 fscanf(pFile,"%s",tmp); // Version
972 fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
973 std::string version(tmp);
976 if (version=="1.0.2")
978 openContours(pFile,pFileData,2,false);
979 openContours(pFile,pFileData,2,true); //Load StaticContours
983 else if (version=="1.0.1")
985 openContours(pFile,pFileData,1,false); //Skips ImageDimensions and ImageSpacing
986 openContours(pFile,pFileData,1,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
990 else if (version=="1.0.0")
992 openContours(pFile,pFileData,1,false); //Skips ImageDimensions and ImageSpacing
997 if(pFileData != NULL)
1002 _theViewPanel->getSceneManager()->removeSceneContours();
1007 void wxContourMainFrame::onImport(){
1008 std::string filename, filenamecontours;
1009 wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
1011 if (dialog.ShowModal() == wxID_OK)
1013 filename = dialog.GetPath().mb_str();
1014 filenamecontours = kernelManager->parseOsirixFile(filename);
1016 if(filenamecontours.compare("") != 0){
1017 onLoadContours(filenamecontours);
1022 void wxContourMainFrame::onTest(){
1023 std::string filename, filenamecontours;
1024 wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1026 if (dialog.ShowModal() == wxID_OK)
1028 filename = dialog.GetPath().mb_str();
1029 std::cout << "This is the filename: " << filename << std::endl;
1035 void wxContourMainFrame::onSave(){
1036 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1037 if(GetFileLocation().empty())
1039 //------------------------------------------------------------------------------------------------------------
1040 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1041 if (dialog.ShowModal() == wxID_OK)
1043 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1044 kernelManager->setCurrentFileName(fileNameContourROI);
1045 saveFileWithContours( fileNameContourROI );
1048 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1051 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1052 std::string fileNameContourROI = GetFileLocation();
1053 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1054 kernelManager->setCurrentFileName(fileNameContourROI);
1055 saveFileWithContours( fileNameContourROI);
1057 //------------------------------------------------------------------------------------------------------------
1061 void wxContourMainFrame::saveFileWithContours( std::string filename )
1064 FILE *pFile=fopen(filename.c_str(),"w+");
1066 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1067 filename.append("data");
1068 std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1069 FILE *pFileData=fopen(filename.c_str(),"w+");
1070 //------------------------------------------------------------------------------------------------------------
1072 std::vector< std::string > lstNameThings;
1073 int i,sizeLstNameThings;
1075 fprintf(pFile,"--CreaContour--\n");
1076 fprintf(pFile,"Version %s\n", "1.0.2" );
1078 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1079 fprintf(pFileData,"--CreaContour--\n");
1080 fprintf(pFileData,"Version %s\n", "1.0.2" );
1081 fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1083 //------------------------------------------------------------------------------------------------------------
1085 vtkImageData *image = _images[0];
1088 image->GetDimensions(dimRange);
1090 fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1093 image->GetSpacing(spaRange);
1095 fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1099 lstNameThings = kernelManager->GetLstNameThings();
1100 sizeLstNameThings = lstNameThings.size();
1101 fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104 fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1105 //------------------------------------------------------------------------------------------------------------
1107 for (i=0 ; i<sizeLstNameThings ; i++)
1109 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1110 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1111 double sizeInPixel = manualModel ->GetPathSize();
1112 double realContourSize = sizeInPixel*_onePixelSize;
1113 manualModel ->SetRealSize(realContourSize);
1114 //------------------------------------------------------------------------------------------------------------
1116 //int size= kernelManager->GetLstNameThings().size();
1118 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1119 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1122 //-- Static Contours
1124 fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1126 fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1128 lstNameThings = kernelManager->GetLstNameThingsStatic();
1129 sizeLstNameThings = lstNameThings.size();
1130 fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1132 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1133 fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1134 //------------------------------------------------------------------------------------------------------------
1136 for (i=0 ; i<sizeLstNameThings ; i++)
1138 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1139 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1146 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, int version, bool staticContour )
1150 vtkImageData *image = _images[0];
1152 double imageSpac[3];
1156 bool compatible = true;
1161 image->GetDimensions(imageDim);
1162 image->GetSpacing(imageSpac);
1164 fscanf(pFile,"%s",tmp); // ImageDimensions
1165 fscanf(pFile,"%s",tmp); // X
1166 tempDim[0] = atoi(tmp);
1167 fscanf(pFile,"%s",tmp); // Y
1168 tempDim[1] = atoi(tmp);
1169 fscanf(pFile,"%s",tmp); // Z
1170 tempDim[2] = atoi(tmp);
1172 fscanf(pFile,"%s",tmp); // ImageSpacing
1173 fscanf(pFile,"%s",tmp); // X
1174 tempSpac[0] = atof(tmp);
1175 fscanf(pFile,"%s",tmp); // Y
1176 tempSpac[1] = atof(tmp);
1177 fscanf(pFile,"%s",tmp); // Z
1178 tempSpac[2] = atof(tmp);
1180 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1181 if (imageDim[0]!=tempDim[0] || imageDim[1]!=tempDim[1] || imageSpac[0]!=tempSpac[0] || imageSpac[1]!=tempSpac[1])
1187 fscanf(pFile,"%s",tmp); // NumberOfContours
1188 fscanf(pFile,"%s",tmp); // ##
1189 int numberOfContours = atoi(tmp);
1191 std::vector<int> instantVector;
1192 int typeContourModel;
1193 manualBaseModel *manModelContour;
1196 if (compatible==true)
1199 for (i=0;i<numberOfContours;i++)
1201 instantVector.clear();
1202 fscanf(pFile,"%s",tmp); // Instant
1204 fscanf(pFile,"%s",tmp); // 1
1205 instantVector.push_back( atoi(tmp) );
1206 fscanf(pFile,"%s",tmp); // 2
1207 instantVector.push_back( atoi(tmp) );
1208 fscanf(pFile,"%s",tmp); // 3
1209 instantVector.push_back( atoi(tmp) );
1210 fscanf(pFile,"%s",tmp); // 4
1211 instantVector.push_back( atoi(tmp) );
1212 fscanf(pFile,"%s",tmp); // 5
1213 instantVector.push_back( atoi(tmp) );
1214 fscanf(pFile,"%s",tmp); // 6
1215 instantVector.push_back( atoi(tmp) );
1218 fscanf(pFile,"%s",tmp); // TypeContourModel
1219 fscanf(pFile,"%s",tmp); // ##
1220 typeContourModel = atoi(tmp);
1222 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
1223 manModelContour->Open(pFile);
1224 if(pFileData != NULL)
1226 manModelContour->OpenData(pFileData);
1229 fscanf(pFile,"%s",tmp); // TypeView
1230 fscanf(pFile,"%s",tmp); // ##
1231 typeView = atoi(tmp);
1233 std::string theName;
1234 theName = kernelManager->createOutline( manModelContour, instantVector );
1235 bool addedModel = theName.compare("") != 0;
1238 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1239 _theViewPanel->getSpacing(spc);
1240 //Adding the manualContourControler to interface objects structure
1241 //Adding the manualViewContour to interface objects structure
1242 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1243 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1246 if (staticContour) //StaticContours (will appear in all slices)
1248 Instant instant(&instantVector);
1249 kernelManager->changeContourOfManager( theName , &instant );
1252 }// for numberOfContours
1255 else if (compatible==false)
1257 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160));
1258 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1259 wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1261 wxString lstOptOperation[2];
1262 lstOptOperation[0]=_T("By Dimension");
1263 lstOptOperation[1]=_T("By Spacing");
1264 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation, 2, wxRA_SPECIFY_COLS);
1266 dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the ")) , 0, wxGROW );
1267 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?")) , 0, wxGROW );
1268 dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW );
1269 dialSizer->Add(radioOpts,0,wxGROW);
1270 dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW );
1271 dialSizer->Add(buttonsSizer,0,wxGROW);
1272 dial->SetSizer(dialSizer, true);
1276 int typeOfTransformation = -1;
1277 bool transform = false;
1279 if (dial->GetReturnCode() == wxID_OK)
1281 typeOfTransformation = radioOpts->GetSelection();
1286 for (i=0;i<numberOfContours;i++)
1288 instantVector.clear();
1289 fscanf(pFile,"%s",tmp); // Instant
1291 fscanf(pFile,"%s",tmp); // 1
1292 instantVector.push_back( atoi(tmp) );
1293 fscanf(pFile,"%s",tmp); // 2
1294 instantVector.push_back( atoi(tmp) );
1295 fscanf(pFile,"%s",tmp); // 3
1296 instantVector.push_back( atoi(tmp) );
1297 fscanf(pFile,"%s",tmp); // 4
1298 instantVector.push_back( atoi(tmp) );
1299 fscanf(pFile,"%s",tmp); // 5
1300 instantVector.push_back( atoi(tmp) );
1301 fscanf(pFile,"%s",tmp); // 6
1302 instantVector.push_back( atoi(tmp) );
1304 fscanf(pFile,"%s",tmp); // TypeContourModel
1305 fscanf(pFile,"%s",tmp); // ##
1306 typeContourModel = atoi(tmp);
1308 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
1309 manModelContour->Open(pFile);
1310 if(pFileData != NULL)
1312 manModelContour->OpenData(pFileData);
1314 if (transform==true)
1316 if (typeOfTransformation==0)
1318 double transX, transY;
1319 transX = (double) imageDim[0]/tempDim[0];
1320 transY = (double) imageDim[1]/tempDim[1];
1321 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1323 else if (typeOfTransformation==1)
1325 double transX, transY;
1326 transX = (double) tempSpac[0]/imageSpac[0];
1327 transY = (double) tempSpac[1]/imageSpac[1];
1328 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1332 fscanf(pFile,"%s",tmp); // TypeView
1333 fscanf(pFile,"%s",tmp); // ##
1334 typeView = atoi(tmp);
1336 std::string theName;
1337 theName = kernelManager->createOutline( manModelContour, instantVector );
1338 bool addedModel = theName.compare("") != 0;
1341 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1342 _theViewPanel->getSpacing(spc);
1343 //Adding the manualContourControler to interface objects structure
1344 //Adding the manualViewContour to interface objects structure
1345 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1346 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1349 if (staticContour) //StaticContours (will appear in all slices)
1351 Instant instant(&instantVector);
1352 kernelManager->changeContourOfManager( theName , &instant );
1354 }// for numberOfContours
1358 void wxContourMainFrame::RefreshInterface(){
1360 _theViewPanel->RefreshInterface();
1361 //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1362 //wxvtk2dbaseview->Refresh();
1365 vtkImageData* wxContourMainFrame::getImageData(){
1366 return _theViewPanel->getImageData();
1369 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1371 //JCP 20-10-08 Undo redo implementation
1373 //JCP 20-10-08 Undo redo implementation
1376 int x = _theViewPanel->GetX();
1377 int y = _theViewPanel->GetY();
1378 int z = _theViewPanel->GetZ();
1379 SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1383 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1385 int typeofcontour = 1;
1387 vtkImageData *imagedata = getImageData();
1389 //Tipo de pixeles a utilizar internamente en ITK
1390 typedef float InternalPixelType;
1391 const unsigned int Dimension = 2;
1392 typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
1394 //Tipo de pixeles de salida 1
1395 typedef unsigned char OutputPixelType;
1396 typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1398 //Tipo de pixeles de salida 2
1399 typedef unsigned short OutputPixelType2;
1400 typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1402 //DefiniciÛn del thresholder
1403 typedef itk::BinaryThresholdImageFilter<
1405 OutputImageType > ThresholdingFilterType;
1407 //DefiniciÛn del primer filtro de conversiÛn de pixeles
1408 typedef itk::CastImageFilter<
1409 OutputImageType, OutputImageType2 > CastFilterType;
1411 //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1412 typedef itk::CastImageFilter<
1413 OutputImageType2, InternalImageType > CastFilterType2;
1415 //Tercer tipo de conversiÛn
1416 typedef itk::RescaleIntensityImageFilter<
1418 OutputImageType > CastFilterType3;
1420 //Cuarto tipo de conversiÛn
1421 typedef itk::RescaleIntensityImageFilter<
1423 OutputImageType > CastFilterType4;
1425 ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1427 thresholder->SetLowerThreshold( 0.0 );
1428 thresholder->SetUpperThreshold( 128 );
1430 thresholder->SetOutsideValue( 255 );
1431 thresholder->SetInsideValue( 0 );
1433 //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1434 typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1435 typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1436 typedef itk::ImageFileWriter< OutputImageType > WriterType;
1438 ConnectorType::Pointer connector= ConnectorType::New();
1439 ConnectorType2::Pointer connector2= ConnectorType2::New();
1442 CastFilterType::Pointer filter=CastFilterType::New();
1443 CastFilterType2::Pointer filter2=CastFilterType2::New();
1445 connector->SetInput( imagedata );
1446 filter2->SetInput(connector->GetOutput());
1448 typedef itk::CurvatureAnisotropicDiffusionImageFilter<
1450 InternalImageType > SmoothingFilterType;
1452 SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1454 typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
1456 InternalImageType > GradientFilterType;
1458 typedef itk::SigmoidImageFilter<
1460 InternalImageType > SigmoidFilterType;
1462 GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
1464 SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1466 sigmoid->SetOutputMinimum( 0.0 );
1467 sigmoid->SetOutputMaximum( 255.0 );
1470 typedef itk::FastMarchingImageFilter<
1472 InternalImageType > FastMarchingFilterType;
1475 FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
1477 typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1478 InternalImageType > GeodesicActiveContourFilterType;
1479 GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1480 GeodesicActiveContourFilterType::New();
1482 typedef itk::ZeroCrossingImageFilter<
1484 InternalImageType > ZeroCrossingFilterType;
1485 ZeroCrossingFilterType::Pointer zeroCrossing =
1486 ZeroCrossingFilterType::New();
1488 const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1490 geodesicActiveContour->SetPropagationScaling( propagationScaling );
1491 geodesicActiveContour->SetCurvatureScaling( 1.0 );
1492 geodesicActiveContour->SetAdvectionScaling( 1.0 );
1494 geodesicActiveContour->SetMaximumRMSError( 0.02 );
1495 int it=atoi( crea::wx2std(iter).c_str() );
1496 geodesicActiveContour->SetNumberOfIterations( it );
1498 smoothing->SetInput( filter2->GetOutput() );
1499 gradientMagnitude->SetInput( smoothing->GetOutput() );
1500 sigmoid->SetInput( gradientMagnitude->GetOutput() );
1501 fastMarching->SetInput( sigmoid->GetOutput() );
1502 geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1503 geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1505 zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1506 //thresholder->SetInput( zeroCrossing->GetOutput() );
1507 thresholder->SetInput( geodesicActiveContour->GetOutput() );
1508 connector2->SetInput( thresholder->GetOutput() );
1511 smoothing->SetTimeStep( 0.125 );
1512 smoothing->SetNumberOfIterations( 5 );
1513 smoothing->SetConductanceParameter( 9.0 );
1516 const double sigma = atof( crea::wx2std(sigm).c_str() );
1517 gradientMagnitude->SetSigma( sigma );
1519 const double alpha = atof( crea::wx2std(alf).c_str() );
1520 const double beta = atof( crea::wx2std(bet).c_str() );
1522 sigmoid->SetAlpha( alpha );
1523 sigmoid->SetBeta( beta );
1525 typedef FastMarchingFilterType::NodeContainer NodeContainer;
1526 typedef FastMarchingFilterType::NodeType NodeType;
1528 NodeContainer::Pointer seeds = NodeContainer::New();
1530 InternalImageType::IndexType seedPosition;
1531 seedPosition[0] = x;
1532 seedPosition[1] = y;
1534 const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1538 const double seedValue = - initialDistance;
1540 node.SetValue( seedValue );
1541 node.SetIndex( seedPosition );
1543 seeds->Initialize();
1544 seeds->InsertElement( 0, node );
1546 fastMarching->SetTrialPoints( seeds );
1548 fastMarching->SetSpeedConstant( 1.0 );
1550 fastMarching->SetOutputSize(
1551 connector->GetOutput()->GetBufferedRegion().GetSize() );
1553 fastMarching->SetStoppingValue( 800 );
1557 connector2->Update();
1558 vtkImageData *idata = connector2->GetOutput();
1560 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1562 cntVTK->SetInput( idata );
1564 cntVTK->SetNumberOfContours( 1 );
1565 cntVTK->SetValue( 0, 255 );
1567 cntVTK->UpdateInformation();
1569 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1570 cpd->SetInput( cntVTK->GetOutput( ) );
1572 cpd->UpdateInformation();
1574 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1575 conn->SetExtractionModeToLargestRegion( );
1576 conn->SetInput( cpd->GetOutput( ) );
1578 conn->UpdateInformation();
1580 vtkStripper* vtkstripper = vtkStripper::New( );
1581 vtkstripper->SetInput( conn->GetOutput() );
1582 vtkstripper->Update();
1583 vtkstripper->UpdateInformation();
1586 vtkPolyData* polyDataResult = cntVTK->GetOutput();
1587 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1588 polyDataResult->Update( );
1589 polyDataResult->UpdateInformation();
1594 myfile.open ("C:/Creatis/example.txt");
1596 polyDataResult->Print(myfile);
1597 myfile << "-------------------------------------\n";
1598 polyDataResult->GetLines()->Print(myfile);
1606 //--Calculating control points
1608 std::vector<double> vecX;
1609 std::vector<double> vecY;
1610 std::vector<double> vecXo;
1611 std::vector<double> vecYo;
1612 std::vector<double>::iterator vecXoi;
1613 std::vector<double>::iterator vecYoi;
1614 std::vector<double> vecZ;
1616 std::vector<double> vecCtrlPointX;
1617 std::vector<double> vecCtrlPointY;
1618 std::vector<double> vecCtrlPointZ;
1624 int ii,size=polyDataResult->GetNumberOfPoints();
1626 myfile.open ("C:/Creatis/example2.txt");
1628 size=polyDataResult->GetNumberOfPoints();
1629 for (ii=0;ii<size;ii++)
1636 p = polyDataResult->GetPoint(ii);
1639 /*if(fabs(yAct-y)>20)
1641 if((xAct-x)>1 || (xAct-x)<-1)
1643 vecX.push_back( p[0] );
1644 vecY.push_back( p[1] );
1645 myfile <<p[0]<<","<<p[1]<<"\n";
1646 std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1647 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1648 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1649 vecZ.push_back( 900 );
1655 vecXo.push_back(p[0]);
1656 vecYo.push_back(p[1]);
1660 else*/ if(fabs(xAct-x)>11)
1662 vecXo.push_back(p[0]);
1663 vecYo.push_back(p[1]);
1667 vecX.push_back( p[0] );
1668 myfile <<p[0]<<","<<p[1]<<"\n";
1669 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1670 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1671 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1672 vecY.push_back( p[1] );
1673 vecZ.push_back( 900 );
1681 while(!vecXo.empty())
1683 vecX.push_back(vecXo.back());
1684 //std::cout<<" x Siguiente "<<vecXo.back();
1686 vecZ.push_back( 900 );
1688 while(!vecYo.empty())
1690 vecY.push_back(vecYo.back());
1695 /*for(int l=0;l<vecX.size();l++)
1699 vecXo.push_back(p[0]);
1700 vecYo.push_back(p[1]);
1711 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1713 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1717 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1719 else if (method==1){
1720 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1722 else if (method==2){
1723 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1724 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1726 //--Adding contour to the system
1728 std::vector<int> actualInstantVector;
1729 _instantPanel->getInstant( actualInstantVector );
1730 actualInstantVector[1]=z;
1732 int j,sizeCtrPt = vecCtrlPointX.size();
1734 manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1735 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1737 for (j=0 ; j<sizeCtrPt ; j++)
1739 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
1741 std::string theName;
1742 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1743 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1744 bool addedModel = theName.compare("") != 0;
1747 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1748 _theViewPanel->getSpacing(spc);
1749 //Adding the manualContourControler to interface objects structure
1750 //Adding the manualViewContour to interface objects structure
1751 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1752 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1753 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1759 WriterType::Pointer writer = WriterType::New();
1760 CastFilterType3::Pointer caster = CastFilterType3::New();
1762 caster->SetInput( gradientMagnitude->GetOutput() );
1763 writer->SetInput( caster->GetOutput() );
1764 writer->SetFileName("Gradient Magnitude.png");
1765 caster->SetOutputMinimum( 0 );
1766 caster->SetOutputMaximum( 255 );
1769 CastFilterType3::Pointer caster2 = CastFilterType3::New();
1770 WriterType::Pointer writer2 = WriterType::New();
1772 caster2->SetInput( sigmoid->GetOutput() );
1773 writer2->SetInput( caster2->GetOutput() );
1774 writer2->SetFileName("Sigmoid.png");
1775 caster2->SetOutputMinimum( 0 );
1776 caster2->SetOutputMaximum( 255 );
1779 CastFilterType3::Pointer caster3 = CastFilterType3::New();
1780 WriterType::Pointer writer3 = WriterType::New();
1782 caster3->SetInput( fastMarching->GetOutput() );
1783 writer3->SetInput( caster3->GetOutput() );
1784 writer3->SetFileName("FastMarching.bmp");
1785 caster3->SetOutputMinimum( 0 );
1786 caster3->SetOutputMaximum( 255 );
1789 CastFilterType3::Pointer caster4 = CastFilterType3::New();
1790 WriterType::Pointer writer4 = WriterType::New();
1792 caster4->SetInput( geodesicActiveContour->GetOutput() );
1793 writer4->SetInput( caster4->GetOutput() );
1794 writer4->SetFileName("GeodesicActiveContour.png");
1795 caster4->SetOutputMinimum( 0 );
1796 caster4->SetOutputMaximum( 255 );
1799 CastFilterType3::Pointer caster5 = CastFilterType3::New();
1800 WriterType::Pointer writer5 = WriterType::New();
1802 caster5->SetInput( zeroCrossing->GetOutput() );
1803 writer5->SetInput( caster5->GetOutput() );
1804 writer5->SetFileName("ZeroCrossing.bmp");
1805 caster5->SetOutputMinimum( 0 );
1806 caster5->SetOutputMaximum( 255 );
1809 catch( itk::ExceptionObject & excep )
1811 std::cerr << "Exception caught !" << std::endl;
1812 std::cerr << excep << std::endl;
1816 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1818 //JCP 20-10-08 Undo redo implementation
1820 //JCP 20-10-08 Undo redo implementation
1823 int x = _theViewPanel->GetX();
1824 int y = _theViewPanel->GetY();
1825 int z = _theViewPanel->GetZ();
1826 SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1831 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1833 int typeofcontour = 1;
1834 //--Extracting Contour
1835 //vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
1836 vtkImageData *imagedata = getImageData();
1837 // double *range = imagedata->GetScalarRange();
1840 vtkImageReslice *imageReslice = vtkImageReslice::New();
1843 // imagedata->GetSpacing(spc);
1848 imageReslice->SetInput( imagedata );
1849 imageReslice->SetInformationInput(imagedata);
1850 imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1851 imageReslice->SetResliceAxesOrigin(0,0,z);
1852 imageReslice->SetOutputDimensionality(2);
1853 imageReslice->SetInterpolationModeToLinear();
1855 imagedata = imageReslice->GetOutput();
1856 imagedata->Update();
1857 imagedata->UpdateInformation();
1859 vtkContourFilter* cntVTK = vtkContourFilter::New( );
1860 cntVTK->SetInput( imagedata );
1862 cntVTK->SetNumberOfContours( 1 );
1863 //cntVTK->SetValue( 0, vmin );
1864 // cntVTK->SetValue( 0, (range[1]*thr/100) );
1865 cntVTK->SetValue( 1, isovalue );
1866 // cntVTK->SetValue( 1, vmax );
1868 cntVTK->UpdateInformation();
1870 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1871 cpd->SetInput( cntVTK->GetOutput( ) );
1872 cpd->ConvertLinesToPointsOff( );
1874 cpd->UpdateInformation();
1876 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1877 conn->SetExtractionModeToClosestPointRegion( );
1878 //conn->SetMaxRecursionDepth( 3000 );
1880 conn->SetInput( cpd->GetOutput( ) );
1882 conn->SetClosestPoint( x, y, 0 );
1884 conn->UpdateInformation();
1886 vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1887 cpd2->SetInput( conn->GetOutput( ) );
1889 cpd2->UpdateInformation();
1891 vtkStripper* vtkstripper = vtkStripper::New( );
1892 vtkstripper->SetInput( cpd2->GetOutput() );
1893 vtkstripper->Update();
1894 vtkstripper->UpdateInformation();
1897 vtkPolyData* polyDataResult = vtkstripper->GetOutput();
1899 polyDataResult->Update( );
1900 polyDataResult->UpdateInformation();
1904 myfile.open ("c:/temp/example.txt");
1906 polyDataResult->Print(myfile);
1907 myfile << "-------------------------------------\n";
1908 polyDataResult->GetLines()->Print(myfile);
1918 //--Calculating control points
1920 std::vector<double> vecX;
1921 std::vector<double> vecY;
1922 std::vector<double> vecZ;
1924 std::vector<double> vecCtrlPointX;
1925 std::vector<double> vecCtrlPointY;
1926 std::vector<double> vecCtrlPointZ;
1930 int ii,size=polyDataResult->GetNumberOfPoints();
1932 for (ii=1;ii<=size;ii++)
1934 id = polyDataResult->GetLines()->GetData()->GetValue(ii);
1935 p = polyDataResult->GetPoint(id);
1938 vecX.push_back( p[0] );
1939 vecY.push_back( p[1] );
1940 vecZ.push_back( 900 );
1941 // vecZ.push_back( p[2] );
1945 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1946 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1949 /*if (methodRadiobox->GetSelection()==0){
1950 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1952 if (methodRadiobox->GetSelection()==1){
1953 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1955 if (methodRadiobox->GetSelection()==2){
1956 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1957 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1961 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1963 else if (method==1){
1964 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1966 else if (method==2){
1967 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1968 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1971 //--Adding contour to the system
1973 std::vector<int> actualInstantVector;
1974 _instantPanel->getInstant( actualInstantVector );
1975 actualInstantVector[1]=z;
1977 int j,sizeCtrPt = vecCtrlPointX.size();
1978 manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1979 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1981 for (j=0 ; j<sizeCtrPt ; j++)
1983 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
1985 std::string theName;
1986 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1987 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1988 bool addedModel = theName.compare("") != 0;
1991 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1992 _theViewPanel->getSpacing(spc);
1993 //Adding the manualContourControler to interface objects structure
1994 //Adding the manualViewContour to interface objects structure
1995 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1996 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1997 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
2001 int wxContourMainFrame::GetImageDataSizeZ(){
2002 return _theViewPanel->GetImageDataSizeZ();
2005 void wxContourMainFrame::GetImageDataRange(double *range){
2006 _theViewPanel->GetImageDataRange(range);
2009 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
2010 //JCP 20-10-08 Undo redo implementation
2012 //JCP 20-10-08 Undo redo implementation
2015 int x = _theViewPanel->GetX();
2016 int y = _theViewPanel->GetY();
2020 double totalZ = maxZ-minZ+1;
2021 for( z=minZ ; z<=maxZ ; z++ )
2023 porcent = 100.0* (z-minZ)/totalZ;
2024 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2025 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2026 //_staticTextSegmentation->SetLabel(tmpString);
2027 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2029 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T(" "));
2034 //Creates a reference line to be used as the axis of the mirroring
2035 void wxContourMainFrame::referenceLine()
2037 if (_refLineControl==NULL)
2042 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2043 vtkimagedata->GetSpacing(spc);
2045 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2047 _refLineControl = new manualLineControler();
2048 _refLineModel = new manualContourModelLine();
2049 _refLineView = new manualViewLine();
2050 _refLineView->SetModel( _refLineModel );
2051 _refLineView->SetWxVtkBaseView( viewer2D );
2052 _refLineView->SetRange( 2 );
2053 _refLineView->SetZ( 1200 );
2055 _refLineView->SetSpacing(spc);
2057 _refLineView->SetColorNormalContour(0, 0, 1);
2058 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2059 _refLineView->SetWidthLine(4);
2061 _refLineControl->SetModelView( _refLineModel , _refLineView );
2062 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2063 style->AddInteractorStyleMaracas( _refLineControl );
2064 _refLineModel->SetCloseContour(false);
2065 _refLineControl->CreateNewManualContour();
2067 //AD: Inicializar el mirroring con una linea ya pintada
2069 double z = _refLineControl->GetZ();
2072 image->GetDimensions(imageDim);
2073 double x = (double) imageDim[0]/2;
2074 double y1 = (double) (imageDim[1]/2)+15;
2075 double y2 = (double) (imageDim[1]/2)-15;
2077 _refLineControl->AddPoint(x,y1,z);
2078 _refLineControl->AddPoint(x,y2,z);
2079 _refLineControl->SetCompleteCreation(true);
2081 _refLineModel->AddPoint(x,y1,z);
2082 _refLineModel->AddPoint(x,y2,z);
2083 _refLineModel->UpdateSpline();
2085 _refLineView->UpdateViewPoint(0);
2086 _refLineView->UpdateViewPoint(1);
2089 _refLineControl->SetActive(true);
2090 _refLineView->RefreshContour();
2094 //Hides the referenceLine
2095 void wxContourMainFrame::refLineHide()
2097 if (_refLineControl!=NULL)
2099 if (_refLineControl->GetActive())
2101 _refLineView->RemoveCompleteContourActor();
2102 _refLineControl->SetEditable(false);
2103 _refLineControl->SetActive(false);
2110 //Shows the referenceLine
2111 void wxContourMainFrame::refLineShow()
2113 if (_refLineControl!=NULL)
2115 if (_refLineControl->GetActive()==false)
2117 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2119 _refLineView->SetModel( _refLineModel );
2120 _refLineView->SetWxVtkBaseView( viewer2D );
2121 _refLineView->SetRange( 2 );
2122 _refLineView->SetZ( 1200 );
2124 _refLineControl->SetModelView( _refLineModel , _refLineView );
2125 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2126 style->AddInteractorStyleMaracas( _refLineControl );
2127 _refLineControl->CreateNewManualContour();
2128 _refLineControl->SetActive(true);
2129 _refLineView->RefreshContour();
2136 void wxContourMainFrame::refLineChangeWidth(int width)
2138 _refLineView->SetWidthLine(width);
2139 _refLineView->RefreshContour();
2145 void wxContourMainFrame::onMirror()
2148 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2149 std::vector<std::string> filterCurrentSelection;
2151 std::vector<int> tempVector;
2152 _instantPanel->getInstant( tempVector );
2153 _performingOperation->reset();
2154 _performingOperation->setStartCommand( COPY );
2155 _performingOperation->setStartOperationInstantVector( tempVector );
2156 _performingOperation->setKeyNamesOperationElems( currentSelection );
2158 char theStartCommand = _performingOperation->getStartCommand();
2159 if ( theStartCommand == COPY )
2161 //JCP 20-10-08 Undo redo implementation
2163 //JCP 20-10-08 Undo redo implementation
2164 std::vector<int> tempVector;
2165 _instantPanel->getInstant( tempVector );
2166 _performingOperation->setEndOperationInstantVector ( tempVector );
2167 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2168 int i,size = elems.size();
2169 for( i=0; i<size; i++ )
2171 createMirrorContourOf( elems[i], tempVector, i>0 );
2175 //deleteContour( _refName );
2180 void wxContourMainFrame::showAxis(bool show)
2182 _theViewPanel->SetVisibleAxis(show);
2183 _theViewPanel->Refresh();
2187 void wxContourMainFrame::onRigidPressed(){
2188 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2189 int elementsSelected = currentSelection.size();
2191 if ( elementsSelected >= 1 ){
2192 //JCP 20-10-08 Undo redo implementation
2194 //JCP 20-10-08 Undo redo implementation
2196 std::vector<int> tempVector;
2197 _instantPanel->getInstant( tempVector );
2198 Instant instant(&tempVector);
2200 int i , size=currentSelection.size();
2201 for ( i=0 ; i<size ; i++ )
2203 kernelManager->changeContourOfManager(currentSelection[i], &instant);
2208 void wxContourMainFrame::onWidthOfContour(double width){
2210 _theViewPanel->removeSceneContours();
2211 _theViewPanel->SetWidthContour(width);
2213 //_theViewPanel->getSceneManager()->SetWidthContour( width );
2218 int wxContourMainFrame::getColorWindow()
2222 vtkImageData * img = getImageData();
2223 img->GetScalarRange(range);
2225 std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2227 return (int)range[1];
2229 return _theViewPanel->getColorWindow();
2232 int wxContourMainFrame::getWindowLevel()
2236 vtkImageData * img = getImageData();
2237 img->GetScalarRange(range);
2239 std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2241 return (int)range[1];
2243 return _theViewPanel->getWindowLevel();
2246 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2247 _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2252 void wxContourMainFrame::onInterpolation(bool interpolate){
2253 _theViewPanel->onInterpolation(interpolate);
2257 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2258 _instantPanel->setConceptValue( name, actual );
2261 void wxContourMainFrame::resetAppend(){
2262 kernelManager->resetAppend();
2266 void wxContourMainFrame::onSpreadAdd(){
2267 std::vector<double> vecX;
2268 std::vector<double> vecY;
2269 std::vector<double> vecZ;
2270 _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2272 std::vector<int> tempVector;
2273 _instantPanel->getInstant( tempVector );
2275 std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2277 interfMainPanel::getInstance()->appendStringSpread(val);
2281 void wxContourMainFrame::onSpreadGo(int type){
2283 //JCP 20-10-08 Undo redo implementation
2285 //JCP 20-10-08 Undo redo implementation
2288 std::vector<double> vecCtrlPointX;
2289 std::vector<double> vecCtrlPointY;
2290 std::vector<double> vecCtrlPointZ;
2294 std::vector<int> tempVector;
2295 _instantPanel->getInstant( tempVector );
2298 kernelManager->getMaxMinZ(&minZ,&maxZ);
2299 //JSTG_16-07-08_----------------------------------------------------------------
2300 //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2301 kernelManager->CalculeSplinePropagation();
2303 double totalZ = maxZ-minZ+1;
2306 //--------------------------------------------------------------------
2307 for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2309 porcent = 100.0* (z-minZ)/totalZ;
2310 int numero = (int)(z-minZ+1)/(int)totalZ;
2311 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2313 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2315 int typeofcontour = 1;
2316 std::string theName;
2317 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2319 if( manModelContour!=NULL ){
2320 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2321 this->_theViewPanel->getSpacing(spc);
2322 //Adding the manualContourControler to interface objects structure
2323 //Adding the manualViewContour to interface objects structure
2324 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2325 _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2330 int numero = (int)(z-minZ+1)/(int)totalZ;
2331 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2333 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2335 //RefreshInterface();
2338 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2342 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2343 std::vector<int> tempVector;
2344 _instantPanel->getInstant(tempVector);
2345 //Asignation of slide number should be different ex by name
2346 tempVector[1]=slide;
2347 return kernelManager->getOutlinesNameAtInstant(tempVector);
2351 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2353 _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2357 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2359 //EED01Juillet2009 GenerateContourExtractData();
2361 wxString tempString;
2362 int maxContourGroup = 0;
2364 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2366 std::vector<manualBaseModel*> lstManConMod;
2367 std::vector<manualBaseModel*> lstManConModTmp;
2368 std::vector<manualBaseModel*> lstManConModExp;
2369 std::vector<double> pLstValue;
2370 std::vector<double> pLstValuePosX;
2371 std::vector<double> pLstValuePosY;
2372 std::vector<double> pLstValuePosZ;
2375 int resultGrayRangeCount;
2378 double resultAverage;
2379 double resultStandardeviation;
2381 std::vector<int> tempVector;
2382 _instantPanel->getInstant( tempVector );
2384 //EED01Juillet2009 vtkImageData *imagedata = _theViewPanel->getImageData();
2385 // int sizeZ = _theViewPanel->GetImageDataSizeZ();
2387 int ii,sizeLstContourThings;
2396 if (selection==0 ) // actual slice
2398 int actualSlice = tempVector[1];
2401 } else { // slice range
2407 totalZ = maxZ-minZ+1;
2408 //EED01Juillet2009 _contourextractdata->SetImage( imagedata);
2410 _contourextractdata->InitVolumeStatistics();
2413 for ( z=minZ ; z<=maxZ ; z++ )
2416 porcent = 100.0* (z-minZ)/totalZ;
2417 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2419 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2420 //_staticTextInformation->SetLabel(tmpString);
2422 //Extraction data from contours of each slice
2423 _contourextractdata->SetZtoBeAnalys(z);
2426 Instant instant(&tempVector);
2427 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2428 sizeLstContourThings = lstContourThings.size();
2430 lstManConMod.clear();
2431 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2433 ContourThing **contourthing = lstContourThings[ii];
2434 lstManConMod.push_back( (*contourthing)->getModel() );
2437 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2439 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2440 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2441 //_grid->SetRowLabelValue(z, tempString );
2443 int iContourGroup,sizeContourGroup;
2444 if (typeContourGroup==3) // contour separete
2446 sizeContourGroup=lstManConModExp.size();
2447 if ( maxContourGroup<sizeContourGroup )
2449 maxContourGroup=sizeContourGroup;
2451 } else { // contour AND OR XOR
2458 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2459 lstManConModTmp.clear();
2463 if (typeContourGroup==3) // contour separete
2465 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2466 } else { // contour AND OR XOR
2467 lstManConModTmp = lstManConModExp;
2470 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2471 _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2474 pLstValuePosX.clear();
2475 pLstValuePosY.clear();
2476 pLstValuePosZ.clear();
2480 _contourextractdata->GetValuesInsideCrown( &numberOfPixels,
2486 resultSize=numberOfPixels;
2487 // Statistics of each slice.
2488 _contourextractdata->Statistics( &pLstValue,
2491 &resultGrayRangeCount,
2496 &resultStandardeviation);
2498 if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1) )
2500 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2503 tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2505 tempString.Printf(_T("%d"),numberOfPixels);
2507 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2509 tempString.Printf(_T("%d"),resultGrayRangeCount);
2510 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2512 tempString.Printf(_T("%f"),resultMin);
2513 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2515 tempString.Printf(_T("%f"),resultMax);
2516 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2518 tempString.Printf(_T("%f"),resultAverage);
2519 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2521 tempString.Printf(_T("%f"),resultStandardeviation);
2522 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2525 } // for iContourGroup
2528 // Print Volume Statistics
2531 int vol_rCountRange;
2533 double vol_minValue;
2534 double vol_maxValue;
2536 double vol_standardeviation;
2538 if (selection!=0 ) // actual slice
2541 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2542 &vol_minValue, &vol_maxValue,
2543 &vol_average, &vol_standardeviation);
2545 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2547 tempString.Printf(_T("%d"),vol_rsize);
2548 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2550 tempString.Printf(_T("%d"),vol_rCountRange);
2551 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2553 tempString.Printf(_T("%f"),vol_minValue);
2554 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2556 tempString.Printf(_T("%f"),vol_maxValue);
2557 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2559 tempString.Printf(_T("%f"),vol_average);
2560 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2562 tempString.Printf(_T("%f"),vol_standardeviation);
2563 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2565 //-----------------------------------------
2568 wxString tmpTitleString;
2570 for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2572 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2573 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2574 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2576 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2577 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2578 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2579 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2580 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2581 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2582 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2584 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2588 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2589 int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2593 SaveValuesXYZ( directory , namefile, typeContourGroup );
2598 vtkImageData * mask;
2599 vtkImageData * value;
2600 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2601 this->SaveImageResult( directory , namefile, mask, value);
2606 std::ostringstream name;
2607 name << filename << ".xls";
2610 FILE *pFile=fopen(name.str().c_str(),"w+");
2616 // int sizeZ = _theViewPanel->GetImageDataSizeZ();
2617 // int maxY=sizeZ+2;
2619 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2622 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2623 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2625 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2626 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2628 fprintf(pFile,"\n\n" );
2632 if (selection==0 ) // actual slice
2634 std::vector<int> tempVector;
2635 _instantPanel->getInstant( tempVector );
2636 int actualSlice = tempVector[1];
2642 for ( j=minZ; j<=maxZ ; j++)
2644 fprintf(pFile,"%d\t" , j );
2645 for (i=0 ; i<maxX ; i++){
2646 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2647 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2649 fprintf(pFile,"\n" );
2653 // Total of stadistics.....
2656 fprintf(pFile,"\n Total:\t" );
2657 for (i=0 ; i<maxX ; i++){
2658 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2659 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2661 fprintf(pFile,"\n" );
2669 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2672 //EED01Juillet2009 GenerateContourExtractData();
2674 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2675 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2677 std::vector<manualBaseModel*> lstManConMod;
2678 std::vector<manualBaseModel*> lstManConModTmp;
2679 std::vector<manualBaseModel*> lstManConModExp;
2680 std::vector<double> pLstValue;
2681 std::vector<double> pLstValuePosX;
2682 std::vector<double> pLstValuePosY;
2683 std::vector<double> pLstValuePosZ;
2685 std::vector<int> tempVector;
2686 _instantPanel->getInstant( tempVector );
2688 //EED01Juillet2009 vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2689 int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2691 int ii,sizeLstContourThings;
2698 minZ = 0;// _mbarrange->GetStart();
2699 maxZ = sizeZ;//_mbarrange->GetEnd();
2700 totalZ = maxZ-minZ+1;
2702 //EED01Juillet2009 _contourextractdata->SetImage( imagedata);
2705 for ( z=0 ; z<sizeZ ; z++)
2708 porcent = 100.0* (z-minZ)/totalZ;
2710 tmpString.Printf(_T("Saving Values"));
2711 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2712 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2713 //_staticTextInformation->SetLabel(tmpString);
2716 //Extraction data from contours of each slice
2717 _contourextractdata->SetZtoBeAnalys( z);
2720 Instant instant(&tempVector);
2721 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2722 sizeLstContourThings = lstContourThings.size();
2724 lstManConMod.clear();
2725 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2727 ContourThing **contourthing = lstContourThings[ii];
2728 lstManConMod.push_back( (*contourthing)->getModel() );
2730 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2735 int iContourGroup,sizeContourGroup;
2736 if (typeContourGroup==3) // contour separete
2738 sizeContourGroup=lstManConModExp.size();
2739 } else { // contour AND OR XOR
2743 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2744 lstManConModTmp.clear();
2745 if (typeContourGroup==3) // contour separete
2747 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2748 } else { // contour AND OR XOR
2749 lstManConModTmp = lstManConModExp;
2752 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2755 pLstValuePosX.clear();
2756 pLstValuePosY.clear();
2757 pLstValuePosZ.clear();
2759 _contourextractdata->GetValuesInsideCrown( &numberOfPixels,
2765 std::string temp = directory + "/" + namefile + "-slice";
2766 temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2767 temp = temp + ".txt";
2769 // LG 14/01/09 : using crea
2770 wxString filename = crea::std2wx(temp);
2771 /*filename.Printf(_T("%s"),directory.c_str());
2772 filename.append(_T("\\"));
2773 filename.append(_T("%s"),namefile.c_str());
2774 filename.append(_T("-slice"));
2775 filename.append(_T("%d"),z);
2776 filename.append(_T("-cont"));
2777 filename.append(_T("%d"),iContourGroup);
2778 filename.append(_T(".txt"));*/
2779 // filename.Printf(temp.c_str());
2783 FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2784 fprintf(pFile,"value \t x \t y \t z\n" );
2785 int iLstValue,sizeLstValue=pLstValue.size();
2786 for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2788 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2791 } // for iContourGroup
2793 interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2794 //_staticTextInformation->SetLabel( _T("") );
2798 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2800 //EED01Juillet2009 GenerateContourExtractData();
2802 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2803 if (typeContourGroup==3)
2807 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2809 std::vector<manualBaseModel*> lstManConMod;
2810 std::vector<manualBaseModel*> lstManConModTmp;
2811 std::vector<manualBaseModel*> lstManConModExp;
2813 std::vector<int> tempVector;
2814 _instantPanel->getInstant( tempVector );
2816 vtkImageData *imagedata = _theViewPanel->getImageData();
2818 imagedata->GetExtent(ext);
2819 int sizeZimage = ext[5]-ext[4]+1;
2821 int ii,sizeLstContourThings;
2830 if (selection==0 ) // actual slice
2832 int actualSlice = tempVector[1];
2839 //EED01Juillet2009 _contourextractdata->SetImage( imagedata);
2841 // cleanning image before range
2842 for (z=0; z<minZ; z++){
2843 _contourextractdata->ResetImageResult(z);
2845 // cleanning image after range
2846 for (z=maxZ+1; z<sizeZimage; z++){
2847 _contourextractdata->ResetImageResult(z);
2852 for ( z=minZ ; z<=maxZ ; z++)
2855 porcent = 100.0* (z-minZ)/totalZ;
2856 tmpString.Printf(_T("Saving Values"));
2857 tmpString.Printf(_T("%d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2858 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2860 //Extraction data from contours of each slice
2861 _contourextractdata->SetZtoBeAnalys( z);
2864 Instant instant(&tempVector);
2865 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2866 sizeLstContourThings = lstContourThings.size();
2868 lstManConMod.clear();
2869 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2871 ContourThing **contourthing = lstContourThings[ii];
2872 lstManConMod.push_back( (*contourthing)->getModel() );
2874 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2877 int iContourGroup,sizeContourGroup;
2878 if (typeContourGroup==3) // contour separete
2880 sizeContourGroup=lstManConModExp.size();
2881 } else { // contour AND OR XOR
2885 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2886 lstManConModTmp.clear();
2887 if (typeContourGroup==3) // contour separete
2889 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2890 } else { // contour AND OR XOR
2891 lstManConModTmp = lstManConModExp;
2894 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2895 _contourextractdata->CalculateImageResult(); // with actual Z
2897 } // for iContourGroup
2900 (*value) = _contourextractdata->GetVtkImageValueResult();
2901 (*mask) = _contourextractdata->GetVtkImageMaskResult();
2905 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2908 std::string temp = directory + "/" + namefile + "-Value.mhd";
2910 wxString filename = crea::std2wx(temp);
2912 // filename.Printf(_T(temp.c_str()));
2913 //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2914 /*filename.Printf(_T("%s"),directory.c_str());
2915 filename.append(_T("\\"));
2916 filename.append(_T("%s"),namefile.c_str());
2917 filename.append(_T("-Value.mhd"));*/
2920 vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2921 writerValueImage->SetInput( value );
2922 writerValueImage->SetInput( value );
2923 writerValueImage->SetFileName( (const char *)filename.mb_str() );
2924 writerValueImage->SetFileDimensionality( 3 );
2925 writerValueImage->SetCompression(false);
2926 writerValueImage->Write( );
2929 // filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2930 temp = directory + "/" + namefile + "-Mask.mhd";
2932 // LG 14/01/09 : using crea
2933 filename = crea::std2wx(temp);
2934 // filename.Printf(_T(temp.c_str()));
2936 /*filename.Printf(_T("%s"),directory.c_str());
2937 filename.append(_T("\\"));
2938 filename.append(_T("%s"),namefile.c_str());
2939 filename.append(_T("-Mask.mhd"));*/
2941 vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2942 writerMaskImage->SetInput( mask );
2943 writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2944 writerMaskImage->SetFileDimensionality( 3 );
2945 writerValueImage->SetCompression(false);
2946 writerMaskImage->Write( );
2948 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2954 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2955 if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2956 _theViewPanel->setActualVertical( value);
2958 else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) ) {
2959 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2965 void wxContourMainFrame::onSnakePressed(){
2966 std::vector<double> vecX;
2967 std::vector<double> vecY;
2968 std::vector<double> vecZ;
2969 _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2971 if (vecX.size()!=0){
2972 std::vector<int> tempVector;
2973 _instantPanel->getInstant( tempVector );
2974 int i,size=vecZ.size();
2975 int actualSlice = tempVector[1];
2976 for ( i=0 ; i<size ; i++ )
2978 vecZ[i] = actualSlice;
2981 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2982 wxPanel* panel = new wxPanel(dialog,-1);
2983 // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2984 new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2985 dialog->ShowModal();
2990 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2991 std::string filename = kernelManager->getCurrentFileName();
2992 if(filename.compare("")!=0){
2993 saveFileWithContours(filename);
2998 void wxContourMainFrame::ShowToolsPanel(bool show){
2999 _pannew->Show(show);
3004 void wxContourMainFrame::SetContourGroup(int contourGroup)
3006 _contourGroup = contourGroup;
3010 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3013 if (_viewMaskImagePanel==NULL)
3015 _contourextractdata = new ContourExtractData(true);
3016 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3018 // _theViewPanel->getImageData()->GetScalarRange(range);
3019 //int min = (int)floor (range[0]);
3020 //int max = (int)ceil (range[1]);
3023 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , 0);
3024 _viewMaskImage = new ThresholdImageView();
3025 _viewMaskImage->SetImage(_contourextractdata->GetVtkImageMaskResult() );
3026 _viewMaskImage->SetminMaxValue( min, max);
3027 _viewMaskImage->SetBaseColor( 0,0,1 );
3028 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3029 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3031 return _viewMaskImagePanel;
3035 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3037 if (_viewColorLayerImagePanel==NULL)
3040 _theViewPanel->getImageData()->GetScalarRange(range);
3041 int min = (int)floor (range[0]);
3042 int max = (int)ceil (range[1]);
3043 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max , 1);
3044 _viewColorLayerImage = new ColorLayerImageView();
3045 // _viewColorLayerImage->SetImage( _theViewPanel->getImageData() );
3046 _viewColorLayerImage->SetImage( NULL );
3047 _viewColorLayerImagePanel->SetColorLayerImageView( _viewColorLayerImage );
3048 _viewColorLayerImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3050 return _viewColorLayerImagePanel;
3054 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3056 if (_viewThresholdImagePanel==NULL)
3059 _theViewPanel->getImageData()->GetScalarRange(range);
3060 int min = (int)floor (range[0]);
3061 int max = (int)ceil (range[1]);
3062 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max , 1);
3063 _viewThresholdImage = new ThresholdImageView();
3064 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3065 _viewThresholdImage->SetminMaxValue( min, max);
3066 _viewThresholdImage->SetBaseColor( 1,0,0 );
3067 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3068 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3070 return _viewThresholdImagePanel;
3073 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3074 int wxContourMainFrame::getType ()
3077 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3079 if(!currentSelection.empty())
3081 std::string cloneName = currentSelection [0];
3082 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3083 tipo = manualModel-> GetTypeModel();
3088 double wxContourMainFrame::getContourSizeInPixels()
3090 double contourSize = 0;
3092 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects(); if(!currentSelection.empty())
3093 if(!currentSelection.empty())
3095 std::string cloneName = currentSelection [0];
3097 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3098 contourSize = manualModel-> GetPathSize();
3102 manualBaseModel * wxContourMainFrame::getContour ()
3104 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3106 if(!currentSelection.empty())
3108 std::string cloneName = currentSelection [0];
3109 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3114 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3116 std::string labelAscii(label.ToAscii());
3117 int pos = labelAscii.find(" ");
3121 for (j=0 ; pos != string::npos;j++)
3123 labelAscii.replace( pos, 1, "_" );
3124 pos= labelAscii.find(" ");
3127 manualModel -> SetLabel(labelAscii);
3129 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3131 double sizeInPixel = manualModel ->GetPathSize();
3132 double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3133 double realContourSize = sizeInPixel*onePixelRealSize;
3134 manualModel ->SetRealSize(realContourSize);
3137 double wxContourMainFrame::onePixelSize( double value)
3139 return _onePixelSize = value;
3142 std::string wxContourMainFrame::GetFileLocation()
3144 return _fileLocation;
3147 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3149 _fileLocation = newFileLocation;
3150 std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3152 //------------------------------------------------------------------------------------------------------------