lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 //----------------------------------------------------------------------------------------------------------------
  27 // Class definition include
  28 //----------------------------------------------------------------------------------------------------------------
  29 #include "wxContourMainFrame.h"
  30
  31
  32
  33 //----------------------------------------------------------------------------------------------------------------
  34 // Includes
  35 //----------------------------------------------------------------------------------------------------------------
  36
  37
  38 #include "NameWrapper.h"
  39 #include "wx/artprov.h"
  40 #include "ConceptDataWrap.h"
  41 #include <creaWx.h>
  42
  43 #include <string>
  44 using namespace std;
  45
  46 //----------------------------------------------------------------------------------------------------------------
  47 // Class implementation
  48 //----------------------------------------------------------------------------------------------------------------
  49 /** @file wxContourMainFrame.cxx */
  50
  51         //------------------------------------------------------------------------------------------------------------
  52         // Constructors & Destructors
  53         //------------------------------------------------------------------------------------------------------------
  54
  55 wxContourMainFrame* wxContourMainFrame::instance=NULL;
  56 char wxContourMainFrame::COPY = 'C';
  57
  58         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  59                 //: wxPanel(parent, id, title, pos, size, style)
  60                 //: wxWindow(parent, id, pos, size, style)
  61                 : wxPanel(parent, id, pos, size, style)
  62         {
  63                 m_mgr.SetManagedWindow(this);
  64                 _contourGroup                           = 1;
  65                 _creatingContoursActive         = false;
  66                 _theViewPanel                           = NULL;
  67 //              _modelManager                           = NULL;
  68                 _instantPanel                           = NULL;
  69 //              _buttonsBar                                     = NULL;
  70 //              _gridPanel                                      = NULL;
  71 //              _drawToolsPanel                         = NULL;
  72 //              _operationsToolsPanel           = NULL;
  73                 //_autoFormsPanel                       = NULL;
  74 //              _standardToolsPanel                     = NULL;
  75 //              _editionToolsPanel                      = NULL;
  76 //              _listViewPanel                          = NULL;
  77 //              _sceneManager                           = NULL;
  78                 //_actualInstant                        = NULL;
  79                 _numberOfVariablesStatistics= 6+1;
  80
  81                 _refLineControl                         = NULL;
  82                 _refLineModel                           = NULL;
  83                 _refLineView                            = NULL;
  84 //              _actorPresent                           = false;
  85
  86                 // set up default notebook style
  87 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  88 //              m_notebook_theme = 0;
  89                 //wxContour_ActionCommandsID a;
  90
  91                 _contourextractdata                     = NULL;
  92                 _viewMaskImage                          = NULL;
  93                 _viewMaskImagePanel                     = NULL;
  94                 _viewThresholdImage                     = NULL;
  95                 _viewThresholdImagePanel        = NULL;
  96                 _viewColorLayerImagePanel       = NULL;
  97                 _frameShowResultImages          = NULL;
  98         }
  99
 100         wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
 101                 : wxPanel(parent, id, pos, size, style)
 102         {
 103                 m_mgr.SetManagedWindow(this);
 104                 _contourGroup                           = 1;
 105                 _creatingContoursActive         = false;
 106                 _theViewPanel                           = NULL;
 107                 _instantPanel                           = NULL;
 108                 _refLineControl                         = NULL;
 109                 _refLineModel                           = NULL;
 110                 _refLineView                            = NULL;
 111 //              _actorPresent                           = false;
 112                 _viewMaskImage                          = NULL;
 113                 _viewMaskImagePanel                     = NULL;
 114                 _viewThresholdImage                     = NULL;
 115                 _viewThresholdImagePanel        = NULL;
 116                 _viewColorLayerImagePanel       = NULL;
 117                 // set up default notebook style
 118                 m_notebook_style                        = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
 119                 m_notebook_theme                        = 0;
 120                 //wxContour_ActionCommandsID a;
 121                 _numberOfVariablesStatistics= 7;
 122                 _datadir                                        = datadir;
 123                 inredo                                          = 0;
 124                 inundo                                          = 0;
 125                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 126                 _performingOperation        = new PerformingOperation();
 127                 if(images.size() > 0)
 128                 {
 129                         this->setVectImages(images);
 130                 }
 131                 _contourextractdata                     = NULL;
 132 }
 133
 134 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 135 {
 136         _images = imgs;
 137         #if defined(_WIN32)
 138                 std::string str_home(getenv("USERPROFILE"));
 139         #elif defined(__GNUC__)
 140                 std::string str_home(getenv("HOME"));
 141         #endif
 142         std::string                             strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 143         std::vector<std::string>        conceptNameVect;
 144         std::vector<int>                        conceptSizeVect;
 145         notebook                = this->createNotebook();
 146         kernelManager   = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 147         _instantPanel   = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 148         _theViewPanel   = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 149 //-------------------------------------------------------------
 150         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 151         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 152         double val = _theViewPanel->getCurrentDeep();
 153         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 154         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 155         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 156         //*******************changeInstant();
 157         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 158         this->configurePanels( );
 159 }
 160
 161
 162         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
 163         {
 164                 if(instance == NULL)
 165                 {
 166                         instance=new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 167                 }
 168                 return instance;
 169         }
 170
 171         std::vector<vtkImageData*> wxContourMainFrame::getVectImages()
 172         {
 173                 return kernelManager->getVectImages();
 174         }
 175
 176         wxContourMainFrame* wxContourMainFrame::getInstance()
 177         {
 178                 return instance;
 179         }
 180
 181         void wxContourMainFrame::resetInstance()
 182         {
 183                 instance->Destroy();
 184         }
 185
 186         wxContourMainFrame::~wxContourMainFrame()
 187         {
 188                 delete _contourextractdata;
 189                 deleteAllContours();
 190                 _pannew->Close();
 191                 interfMainPanel::resetInstance();
 192                 delete kernelManager;
 193                 instance = NULL;
 194                 //_pannew->Destroy();
 195                 //delete _pannew;
 196
 197                 m_mgr.UnInit();
 198                 //delete m_mgr;
 199
 200                 //El problema al cerrar la aplicacion puede estar asociado
 201                 //a que  wxAUINotebook esta en la aplicacion
 202                 //principal (wxContourGUIExample)tambien
 203                 //EED????               delete _theViewPanel;
 204                 //EED????               delete _instantPanel;
 205                 //EED????               delete _buttonsBar;
 206                 //EED????               delete _actualInstant;
 207                 //EED????               delete _sceneManager;
 208         }
 209
 210
 211         //------------------------------------------------------------------------------------------------------------
 212         // Creational and initialization methods using WxAui
 213         //------------------------------------------------------------------------------------------------------------
 214         //
 215         wxAuiNotebook * wxContourMainFrame::createNotebook()
 216         {
 217                 wxSize client_size = GetClientSize();
 218                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 219                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 220                 return noteBook;
 221         }
 222
 223
 224         //------------------------------------------------------------------------------------------------------------
 225         // Creational and initialization methods
 226         //------------------------------------------------------------------------------------------------------------
 227         bool wxContourMainFrame::configurePanels( )
 228         {
 229                 bool configured = _theViewPanel!=NULL;
 230
 231                 configured &= _theViewPanel!=NULL;
 232                 if( _theViewPanel!=NULL )
 233                 {
 234                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 235                         m_mgr.Update();
 236                 }
 237                 if( configured )
 238                 {
 239                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 240                         m_mgr.Update();
 241                 }
 242                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 243                 m_mgr.Update();
 244                 SetMinSize(wxSize(300,300));
 245                 m_mgr.Update();
 246                 return configured;
 247         }
 248
 249
 250         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 251                 {
 252                 bool configured = panel!=NULL;
 253                 configured &= panel!=NULL;
 254
 255                 if( configured )
 256                 {
 257                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 258                         m_mgr.Update();
 259                 }
 260                 return configured;
 261         }
 262
 263         //------------------------------------------------------------------------------------------------------------
 264         //  Attributes getters and setters
 265         //------------------------------------------------------------------------------------------------------------
 266
 267
 268
 269         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 270         {
 271                 _instantPanel = theInstantChooserPanel;
 272         }
 273
 274 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 275 //      {
 276 //              _buttonsBar = theButtonsBar;
 277 //      }
 278
 279 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 280 //      {
 281 //              _gridPanel = theGridPanel;
 282 //      }
 283
 284 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 285 //      {
 286 //              _drawToolsPanel = theDrawToolsPanel;
 287 //      }
 288
 289 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 290 //      {
 291 //              _operationsToolsPanel = theOperationsToolsPanel;
 292 //      }
 293
 294 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 295 //      {
 296 //              _autoFormsPanel = theAutoFormsPanel;
 297 //      }
 298
 299 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 300 //      {
 301 //              _standardToolsPanel= theStandardToolsPanel;
 302 //      }
 303
 304 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 305 //      {
 306 //              _editionToolsPanel =  theEditionToolsPanel;
 307 //      }
 308
 309 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 310 //      {
 311 //              _listViewPanel = theListViewPanel;
 312 //      }
 313
 314
 315
 316 void wxContourMainFrame::onCreateContourSpline( ){
 317
 318         //JCP 20-10-08 Undo redo implementation
 319         saveState();
 320         //JCP 20-10-08 Undo redo implementation
 321         createContour( 1 );
 322
 323 }
 324
 325 void wxContourMainFrame::onCreateContourRectangle( )
 326 {
 327     //JCP 20-10-08 Undo redo implementation
 328         saveState();
 329         //JCP 20-10-08 Undo redo implementation
 330         createContour( 2 );
 331 }
 332
 333 void wxContourMainFrame::onCreateContourCircle( )
 334 {
 335     //JCP 20-10-08 Undo redo implementation
 336         saveState();
 337         //JCP 20-10-08 Undo redo implementation
 338         createContour( 3 );
 339 }
 340
 341 void wxContourMainFrame::onCreateContourLine( )
 342 {
 343     //JCP 20-10-08 Undo redo implementation
 344         saveState();
 345         //JCP 20-10-08 Undo redo implementation
 346         createContour( 6 );
 347 }
 348
 349 // RaC 09-09 --------------------------------------
 350 void wxContourMainFrame::onCreateContourPoints( )
 351 {
 352     //JCP 20-10-08 Undo redo implementation
 353         saveState();
 354         //JCP 20-10-08 Undo redo implementation
 355         createContour( 7 );
 356 }
 357 // RaC 09-09 --------------------------------------
 358
 359 // RaC 10-09 --------------------------------------
 360 void wxContourMainFrame::onCreateContourPolygon( )
 361 {
 362     //JCP 20-10-08 Undo redo implementation
 363         saveState();
 364         //JCP 20-10-08 Undo redo implementation
 365         createContour( 10 );
 366 }
 367 // RaC 10-09 --------------------------------------
 368
 369 //------------------------------------------------------------------------------------------------------------
 370
 371 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 372 {
 373         //Creating the manualBaseModel and including in the model
 374         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 375
 376         std::vector<int> instantVector;
 377         _instantPanel->getInstant( instantVector );
 378         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 379
 380         /*std::vector<int> instantVector;
 381         _instantPanel->getInstant( instantVector );
 382         std::string theName;
 383         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 384         bool addedModel = theName.compare("") != 0;//??
 385
 386         if( addedModel )
 387         {
 388                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 389                 _theViewPanel->getSpacing(spc);
 390                 //Adding the manualContourControler to interface objects structure
 391                 //Adding the manualViewContour to interface objects structure
 392                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 393                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 394         }
 395 }
 396
 397 void wxContourMainFrame::createContour( int typeContour )
 398 {
 399         //Creating the manualContourModel and including in the model
 400         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 401         std::vector<int> instantVector;
 402         _instantPanel->getInstant( instantVector );
 403
 404         std::vector<int> tempVector;
 405         getInstantVector( tempVector );
 406         manModelContour->SetLabel2( std::to_string(tempVector[1]) );
 407
 408         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 409         /*std::vector<int> instantVector;
 410         _instantPanel->getInstant( instantVector );
 411         std::string theName;
 412         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 413         bool addedModel = theName.compare("") != 0;//??
 414         if( addedModel )
 415         {
 416                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 417                 _theViewPanel->getSpacing(spc);
 418                 //Adding the manualContourControler to interface objects structure
 419                 //Adding the manualViewContour to interface objects structure
 420                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 421                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 422         } // if addedModel
 423 }
 424
 425 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 426
 427         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 428         manualBaseModel *manModelContour=NULL;
 429         manModelContour = manModelContourBullEye;
 430         if (panel!=NULL){
 431                 int iCrown,sizeCrowns,iSector,sizeSectors;
 432                 double radioA,radioB,ang,angDelta ;
 433                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 434                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 435                 {
 436                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 437                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 438                         if (iCrown==sizeCrowns-1)
 439                         {
 440                                 radioA  = 0;
 441                         } else {
 442                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 443                         }
 444                         radioA=radioA/100.0;
 445                         radioB=radioB/100.0;
 446                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 447                         {
 448                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 449                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 450                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 451                         } // for iSector
 452                 } // for iCrown
 453         } // if _panelBullEyeOptions
 454
 455         return manModelContour;
 456 }
 457
 458 void wxContourMainFrame :: saveState()
 459 {
 460         std::string temp = kernelManager->saveState();
 461         saveFileWithContours(temp);
 462 }
 463
 464 void wxContourMainFrame::onDeleteContour()
 465 {
 466         //JCP 20-10-08 Undo redo implementation
 467                 saveState();
 468                 //JCP 20-10-08 Undo redo implementation
 469
 470                 std::vector<std::string> lstKeyNameToBeErase;
 471                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 472                 deleteContours( lstKeyNameToBeErase );
 473 /*JCP 19 - 11 - 08
 474                 int i,size=_sceneManager->getSelectedObjects().size();
 475                 for(i=0;i<size;i++)
 476                 {
 477                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 478                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 479                         if ( ispartofstaticlist>=0 )
 480                         {
 481                                 std::vector<int> tempVector;
 482                                 _instantPanel->getInstant( tempVector );
 483                                 Instant instant(&tempVector);
 484                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 485                         }
 486                 }
 487
 488                 std::vector<std::string> lstKeyName;
 489                 std::vector<std::string> lstKeyNameActualSlice;
 490                 std::vector<std::string> lstKeyNameToBeErase;
 491
 492                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 493                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 494                 int k,kSize=lstKeyNameToBeErase.size();
 495                 int j,jSize=lstKeyNameActualSlice.size();
 496                 bool ok;
 497                 for (k=0;k<kSize; k++)
 498                 {
 499                         ok=false;
 500                         for (j=0;j<jSize; j++)
 501                         {
 502                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 503                                 {
 504                                         ok=true;
 505                                 }
 506                         } // for j
 507                         if (ok==true)
 508                         {
 509                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 510                         } // if ok
 511                 } // for k
 512
 513                 deleteContours( lstKeyName );
 514 JCP 19 - 11 - 08*/
 515 }
 516
 517 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 518 {
 519         int i,size=keyNamesVector.size();
 520         for (i=0;i<size;i++)
 521         {
 522                 deleteContour( keyNamesVector[i] );
 523         }
 524 }
 525
 526 void wxContourMainFrame :: deleteContour( std::string theKeyName )
 527 {
 528         /*
 529         manualContourModel                      * cModel;
 530         manualViewBaseContour           * cViewer;
 531         manualContourBaseControler      * cControler;
 532
 533         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 534         cControler      = conwrapviewControl->getControler();*/
 535
 536         //JCP 21 - 11 - 2008
 537         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 538         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 539
 540         if (isedit  && ispartofstaticlst)
 541         {
 542                 _theViewPanel->removeFromScene(theKeyName);
 543
 544                 kernelManager->deleteCModel(theKeyName);
 545                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 546                 //cViewer               = conwrapviewControl->getViewer();
 547                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 548                 //cControler* conwrapviewControl->getControler();
 549         //      delete cModel;
 550         //      delete cViewer;
 551         //      delete cControler;
 552         } // if editable
 553 //JCP 21 - 11 - 08
 554 }
 555
 556 void wxContourMainFrame::onDeleteContoursActSlice()
 557 {
 558         //JCP 20-10-08 Undo redo implementation
 559         saveState();
 560         //JCP 20-10-08 Undo redo implementation
 561
 562         std::vector<int> tempVector;
 563         getInstantVector( tempVector );
 564         deleteContours( getOutlinesName( tempVector[1] ) );
 565 //      deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 566
 567 }
 568 void wxContourMainFrame::onDeleteAllContours(){
 569         //JCP 20-10-08 Undo redo implementation
 570         saveState();
 571         deleteAllContours();
 572 }
 573 void wxContourMainFrame::deleteAllContours(){
 574         //JCP 20-10-08 Undo redo implementation
 575
 576         wxBusyCursor wait;
 577         std::vector<int> tempVector;
 578         _instantPanel->getInstant( tempVector );
 579
 580 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 581 //              the values in GetStart and GetEnd will then not be initialize also.
 582 //              We use instead the values given when initializing the _deletepanel.
 583
 584         //int minZ = _mbarrangeDeleteAll->GetStart();
 585         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 586         int minZ, maxZ;
 587
 588         minZ = 0;
 589         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 590
 591 //JCP --08-09-2008
 592
 593         _theViewPanel->getSceneManager()->removeSceneContours( );
 594         _theViewPanel->getSceneManager()->removeAllOutlines();
 595         kernelManager->removeAllOutlines();
 596 //JCP --08-09-2008
 597         /*
 598         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 599         {
 600                 _theViewPanel->getSceneManager()->removeSceneContours( );
 601                 _modelManager->removeAllOutlines();
 602                 _theViewPanel->getSceneManager()->removeAllOutlines();
 603
 604         } else {
 605                 for ( z=minZ ; z<=maxZ ; z++)
 606                 {
 607                         tempVector[1]=z;
 608                         Instant instant(&tempVector);
 609                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 610
 611                         sizeLstContourThings = lstContourThings.size();
 612                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 613                         {
 614                                 ContourThing **contourthing = lstContourThings[ii];
 615                                 deleteContour( (*contourthing)->getName() );
 616                         } //for ii
 617                 }// for z
 618         } // if
 619 JCP --08-09-2008 */
 620 }
 621
 622 void wxContourMainFrame::setConceptValue( std::string name, int value )
 623 {
 624         _instantPanel->setConceptValue(name, value);
 625 }
 626
 627
 628 ConceptDataWrap* wxContourMainFrame::getLastConceptData()
 629 {
 630         return _instantPanel->getLastConceptData();
 631 }
 632
 633
 634 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
 635 {
 636         return _instantPanel->getIfConceptCheckedAt( name, pos );
 637 }
 638
 639
 640
 641 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 642 {
 643         vtkImageData * mask;
 644         vtkImageData * value;
 645         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 646
 647         std::vector<int> nTypeView;
 648         nTypeView.push_back(5);
 649         nTypeView.push_back(1);
 650         nTypeView.push_back(2);
 651         nTypeView.push_back(0);
 652
 653         if (_frameShowResultImages==NULL)
 654         {
 655 //              wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 656                 _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
 657                      wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION |  wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER  );
 658
 659                 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 660                 m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
 661
 662                 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 663                 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 664
 665                 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 666                 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 667
 668
 669                 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 670                 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 671                 m_mgr_noteBookViewerResult->Update();
 672                 _frameShowResultImages->Show();
 673         } // if _frameShowResultImages
 674 }
 675
 676
 677
 678
 679 void wxContourMainFrame::changeInstant()
 680 {
 681                 std::vector<int> instantVect;
 682                 _instantPanel->getInstant( instantVect );
 683                 int actualSlice = instantVect[1];
 684                 kernelManager->setInstant(instantVect);
 685             // Refresh Mask image
 686                 if(_viewMaskImage!=NULL)
 687                 {
 688                         _viewMaskImage->SetZ(actualSlice);
 689                         if (_viewMaskImagePanel->IsVisible()==true)
 690                         {
 691                                 vtkImageData *mask, *value;
 692                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 693                                 _viewMaskImage->onThreshold();
 694                         }
 695                 } // if _viewMaskImage
 696         // Refresh Threshold image
 697                 if(_viewThresholdImage!=NULL)
 698                 {
 699                         _viewThresholdImage->SetZ(actualSlice);
 700                         if (_viewThresholdImagePanel->IsVisible()==true)
 701                         {
 702                                 _viewThresholdImage->onThreshold();
 703                         }
 704                 } // if _viewThresholdImage
 705                 updateInstantOutlines();
 706                 updateInstantImageData();
 707                 updateInstantAxes();
 708 }
 709
 710
 711
 712 void wxContourMainFrame::updateInstantOutlines()
 713 {
 714         _theViewPanel->removeSceneContours();
 715         _theViewPanel->addNameWrapperToScene();
 716
 717         //for( int i=0; i<size; i++)
 718         //{
 719         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 720         //}
 721 }
 722
 723 int wxContourMainFrame::getNamesWrappingSize()
 724 {
 725         return kernelManager->getNamesWrappingSize();
 726 }
 727
 728 std::string wxContourMainFrame::getNameWrapping(int i)
 729 {
 730         return kernelManager->getNameWrapping(i);
 731 }
 732
 733 void wxContourMainFrame::updateInstantImageData()
 734 {
 735         std::vector<int> inst;
 736         _instantPanel->getInstant(inst);
 737
 738         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 739         if(img!=NULL)
 740         {
 741                 _theViewPanel->changeImage(img);
 742                 showAxis(false);
 743         }else{
 744                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 745                 _theViewPanel->setImageSlice(z);
 746         } // if img
 747 }
 748
 749 void wxContourMainFrame::updateInstantAxes()
 750 {
 751 }
 752
 753
 754 void wxContourMainFrame::onChangeDeep(int val){
 755         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 756         changeInstant();
 757 }
 758
 759
 760 void wxContourMainFrame::onCopy(){
 761         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 762         std::vector<int> tempVector;
 763         _instantPanel->getInstant( tempVector );
 764     _performingOperation->reset();
 765         _performingOperation->setStartCommand( COPY );
 766         _performingOperation->setStartOperationInstantVector( tempVector );
 767         _performingOperation->setKeyNamesOperationElems( currentSelection );
 768 }
 769
 770 void wxContourMainFrame::onPaste()
 771 {
 772         char theStartCommand = _performingOperation->getStartCommand();
 773         if (  theStartCommand == COPY )
 774         {
 775                 //JCP 20-10-08 Undo redo implementation
 776                 saveState();
 777                 //JCP 20-10-08 Undo redo implementation
 778                 std::vector<int> tempVector;
 779                 _instantPanel->getInstant( tempVector );
 780                 _performingOperation->setEndOperationInstantVector ( tempVector );
 781                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 782                 int i,size = elems.size();
 783                 for( i=0; i<size; i++ )
 784                 {
 785                         createCopyContourOf( elems[i], tempVector, i>0 );
 786                 }
 787         }
 788 }
 789
 790 void wxContourMainFrame::onUndo()
 791 {
 792         std::string filename;
 793         if(kernelManager->onUndoSaveFile(filename)){
 794                 saveFileWithContours(filename);
 795         }
 796         if(kernelManager->onUndo(filename)){
 797                 loadState(filename);
 798         }
 799 }
 800 void wxContourMainFrame::onRedo(){
 801         std::string filename;
 802         if(kernelManager->onRedo(filename)){
 803                 loadState(filename);
 804         }
 805
 806 }
 807 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 808 {
 809         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 810         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 811         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 812 }
 813
 814 ///AD: 03-09    Copy the object and apply the given transformation
 815 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 816 {
 817         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 818         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 819
 820         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 821         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 822
 823         double pnt1X = refPoint1->GetX();
 824         double pnt1Y = refPoint1->GetY();
 825 //      double pnt1Z = refPoint1->GetZ();
 826         double pnt2X = refPoint2->GetX();
 827         double pnt2Y = refPoint2->GetY();
 828 //      double pnt2Z = refPoint2->GetZ();
 829
 830         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 831         vtkTransform *t = vtkTransform::New();
 832
 833         t->PostMultiply();
 834         t->Identity();
 835         t->Translate(-pnt1X, -pnt1Y, 0);
 836         t->RotateZ(-angle);
 837         t->Scale(-1,1,1);
 838         t->RotateZ(angle);
 839         t->Translate(pnt1X, pnt1Y, 0);
 840         t->Update();
 841
 842         int i,size=manualModel->GetSizeLstPoints();
 843         for (i=0;i<size;i++)
 844         {
 845                 manualPoint * mp = manualModel->GetManualPoint(i);
 846                 float vecIn[3];
 847                 float vecOut[3];
 848                 vecIn[0]=mp->GetX();
 849                 vecIn[1]=mp->GetY();
 850                 vecIn[2]=mp->GetZ();
 851                 t->TransformPoint( vecIn, vecOut );
 852                 mp->SetPointX( vecOut[0] );
 853                 mp->SetPointY( vecOut[1] );
 854                 mp->SetPointZ( vecOut[2] );
 855         } // for i
 856
 857         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 858 }
 859
 860 void wxContourMainFrame ::loadState(std::string filename)
 861 {
 862         deleteAllContours();
 863         onLoadContours(filename,false);
 864 }
 865
 866 void wxContourMainFrame::onLoad()
 867 {
 868         std::string fileNameContourROI = GetFileLocation();
 869 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 870         if(GetFileLocation().empty())
 871         {
 872 //------------------------------------------------------------------------------------------------------------
 873 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 874 #if wxMAJOR_VERSION <= 2
 875                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 876 #else
 877                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
 878 #endif
 879                 if (dialog.ShowModal() == wxID_OK)
 880                 {
 881                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 882                 } // if dialog
 883         } // if FileLocation
 884         onLoadContours(fileNameContourROI,true);
 885 }
 886
 887 void  wxContourMainFrame::SetZForAllContours(int pz)
 888 {
 889         //-- Normal Contours
 890         std::vector< std::string > lstNameThings;
 891         int i,sizeLstNameThings;
 892         int ii,sizeLstPoints;
 893         lstNameThings           = kernelManager->GetLstNameThings();
 894         sizeLstNameThings       = lstNameThings.size();
 895         for (i=0 ; i<sizeLstNameThings ; i++)
 896         {
 897 printf("EED wxContourMainFrame::SetZForAllContours contour=%d \n", i );
 898                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 899                 sizeLstPoints = manualModel->GetSizeLstPoints();
 900                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 901                 {
 902                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 903                 }// for ii  list of points
 904         }// for i  list of Things
 905
 906         //-- Static Contours
 907
 908         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 909         sizeLstNameThings       = lstNameThings.size();
 910         for (i=0 ; i<sizeLstNameThings ; i++)
 911         {
 912                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 913                 sizeLstPoints = manualModel->GetSizeLstPoints();
 914                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 915                 {
 916                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 917                 }// for ii  list of points
 918         }// for i  list of static things
 919 }
 920
 921 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
 922 {
 923         char tmp[255];
 924         char tmpD[255];
 925         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 926 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 927         if(pFile != NULL)
 928         {
 929 //------------------------------------------------------------------------------------------------------------
 930         fileNameContourROI.append("data");
 931                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 932                 if(pFileData != NULL)
 933                 {
 934                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 935                         fscanf(pFileData,"%s",tmpD); // Version
 936                         fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 937
 938                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 939                         fscanf(pFileData,"%s",tmpD); // #
 940                         _onePixelSize = atof(tmpD);
 941                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 942                         fscanf(pFileData,"%s",tmpD); // #
 943                 }
 944                 fscanf(pFile,"%s",tmp); // --CreaContour--
 945                 fscanf(pFile,"%s",tmp); // Version
 946                 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 947                 std::string version(tmp);
 948                 //AD:02-06-09
 949         _tmpReadFileTypeOfTransformation=-1;
 950                 if (version=="1.0.3")
 951                 {
 952                     readDimSpc(pFile,interactiveInterface);   // DimSpc interactive ON
 953                         openContours(pFile,pFileData,false);
 954                         openContours(pFile,pFileData,true);     //Load StaticContours
 955                 }
 956                 if (version=="1.0.2")
 957                 {
 958 //EED001
 959                         readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
 960                         openContours(pFile,pFileData,false);
 961                         readDimSpc(pFile,false);                // DimSpc interactive OFF
 962                         openContours(pFile,pFileData,true);     // Load StaticContours
 963                         SetZForAllContours(-900);
 964                 } else if (version=="1.0.1") { //AD:02-06-09
 965                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 966                         openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
 967                 } else if (version=="1.0.0") { //AD:02-06-09
 968                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 969                 }
 970                 fclose(pFile);
 971                 if(pFileData != NULL)
 972                 {
 973                         fclose(pFileData);
 974                 } // if
 975         } // pFile
 976         _theViewPanel->getSceneManager()->removeSceneContours();
 977         changeInstant();
 978 }
 979
 980
 981 void wxContourMainFrame::onImport()
 982 {
 983         std::string filename, filenamecontours;
 984 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 985 #if wxMAJOR_VERSION <= 2
 986         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
 987 #else
 988         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
 989 #endif
 990         if (dialog.ShowModal() == wxID_OK)
 991         {
 992                 filename = dialog.GetPath().mb_str();
 993                 filenamecontours = kernelManager->parseOsirixFile(filename);
 994
 995                 if(filenamecontours.compare("") != 0)
 996                 {
 997                         onLoadContours(filenamecontours,true);
 998                 } // if
 999         } // if
1000 }
1001
1002 void wxContourMainFrame::onTest()
1003 {
1004         std::string filename, filenamecontours;
1005 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1006 #if wxMAJOR_VERSION <= 2
1007         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1008 #else
1009         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
1010 #endif
1011         if (dialog.ShowModal() == wxID_OK)
1012         {
1013                 filename = dialog.GetPath().mb_str();
1014                 std::cout << "This is the filename: " << filename << std::endl;
1015         } // if
1016 }
1017
1018 //AD: 29-05-09
1019 void wxContourMainFrame::onSave()
1020 {
1021 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1022         if(GetFileLocation().empty())
1023         {
1024 //------------------------------------------------------------------------------------------------------------
1025 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1026 #if wxMAJOR_VERSION <= 2
1027                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1028 #else
1029                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
1030 #endif
1031                 if (dialog.ShowModal() == wxID_OK)
1032                 {
1033                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1034                         kernelManager->setCurrentFileName(fileNameContourROI);
1035                         saveFileWithContours( fileNameContourROI );
1036                 }
1037         } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
1038                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1039                 std::string fileNameContourROI = GetFileLocation();
1040                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1041                 kernelManager->setCurrentFileName(fileNameContourROI);
1042                 saveFileWithContours( fileNameContourROI);
1043         }
1044 //------------------------------------------------------------------------------------------------------------
1045 }
1046
1047 //AD: 29-05-09
1048 void wxContourMainFrame::saveFileWithContours( std::string filename )
1049 {
1050
1051         FILE *pFile=fopen(filename.c_str(),"w+");
1052
1053 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1054         filename.append("data");
1055         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1056         FILE *pFileData=fopen(filename.c_str(),"w+");
1057 //------------------------------------------------------------------------------------------------------------
1058
1059         std::vector< std::string > lstNameThings;
1060         int i,sizeLstNameThings;
1061
1062         fprintf(pFile,"--CreaContour--\n");
1063         fprintf(pFile,"Version %s\n", "1.0.3" );
1064
1065 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1066         fprintf(pFileData,"--CreaContour--\n");
1067         fprintf(pFileData,"Version %s\n", "1.0.3" );
1068         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1069
1070 //------------------------------------------------------------------------------------------------------------
1071
1072         vtkImageData *image = _images[0];
1073
1074         int dimRange[3];
1075         image->GetDimensions(dimRange);
1076
1077         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1078
1079         double spaRange[3];
1080         image->GetSpacing(spaRange);
1081
1082         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1083
1084         // Normal Contours
1085
1086         lstNameThings           = kernelManager->GetLstNameThings();
1087         sizeLstNameThings       = lstNameThings.size();
1088         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1089
1090 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1091         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1092 //------------------------------------------------------------------------------------------------------------
1093
1094
1095 // EED 2017-05-30
1096         double spc[3];
1097         spc[0]=1;
1098         spc[1]=1;
1099         spc[2]=1;
1100
1101         for (i=0 ; i<sizeLstNameThings ; i++)
1102         {
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1105
1106 // EED 2017-05-30
1107 //              double sizeInPixel = manualModel ->GetPathSize(  );
1108                 double sizeInPixel = manualModel ->GetPathSize( spc );
1109
1110                 double realContourSize = sizeInPixel*_onePixelSize;
1111                 manualModel ->SetRealSize(realContourSize);
1112 //------------------------------------------------------------------------------------------------------------
1113
1114         //int size= kernelManager->GetLstNameThings().size();
1115
1116                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1117                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1118         }// for i
1119
1120         //-- Static Contours
1121
1122 //      fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1123 //      fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1124
1125         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1126         sizeLstNameThings       = lstNameThings.size();
1127         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1128
1129 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1130         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1131 //------------------------------------------------------------------------------------------------------------
1132
1133         for (i=0 ; i<sizeLstNameThings ; i++)
1134         {
1135                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1136                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1137         }// for i
1138         fclose(pFile);
1139         fclose(pFileData);
1140 }
1141
1142
1143 //EED02
1144 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1145 {
1146         char tmp[255];
1147         int             imageDim[3];
1148         double          imageSpac[3];
1149         vtkImageData    *image          = _images[0];
1150     image->GetDimensions(imageDim);
1151     image->GetSpacing(imageSpac);
1152
1153     fscanf(pFile,"%s",tmp); // ImageDimensions
1154     fscanf(pFile,"%s",tmp); // X
1155     _tmpReadFileImageDim[0] = atoi(tmp);
1156     fscanf(pFile,"%s",tmp); // Y
1157     _tmpReadFileImageDim[1] = atoi(tmp);
1158     fscanf(pFile,"%s",tmp); // Z
1159     _tmpReadFileImageDim[2] = atoi(tmp);
1160
1161     fscanf(pFile,"%s",tmp); // ImageSpacing
1162     fscanf(pFile,"%s",tmp); // X
1163     _tmpReadFileImageSpac[0] = atof(tmp);
1164     fscanf(pFile,"%s",tmp); // Y
1165     _tmpReadFileImageSpac[1] = atof(tmp);
1166     fscanf(pFile,"%s",tmp); // Z
1167     _tmpReadFileImageSpac[2] = atof(tmp);
1168
1169
1170         if (interactiveOption==true)
1171     {
1172                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1173                 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1174                 {
1175                         wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
1176                         wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1177 //                      wxBoxSizer              *dialSizer = new wxBoxSizer(wxVERTICAL);
1178                         wxFlexGridSizer *dialSizer = new wxFlexGridSizer(1);
1179
1180                         wxString lstOptOperation[3];
1181                         lstOptOperation[0]=_T("By Dimension (XY)");
1182                         lstOptOperation[1]=_T("By Spacing   (XY)");
1183                         lstOptOperation[2]=_T("By Spacing   (XYZ)");
1184                         wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(370,200), 3 , lstOptOperation,  3, wxRA_SPECIFY_ROWS);
1185
1186                         dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1187                         dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1188                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1189                         dialSizer->Add(radioOpts,0,wxGROW);
1190                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1191                         dialSizer->Add(buttonsSizer,0,wxGROW);
1192                         dial->SetSizer(dialSizer, true);
1193                         dial->Layout();
1194                         dial->ShowModal();
1195
1196                         _tmpReadFileTypeOfTransformation = -1;
1197 //EED                   bool transform = false;
1198
1199                         if (dial->GetReturnCode() == wxID_OK)
1200                         {
1201                                 _tmpReadFileTypeOfTransformation    = radioOpts->GetSelection();
1202                         }// if wxOK
1203
1204                 } // if dim spc
1205     } // if interactiveOption
1206 }
1207
1208
1209
1210
1211 //AD:04-06-09
1212 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1213 {
1214 printf ("EED wxContourMainFrame::openContours Start \n");
1215         char tmp[255];
1216
1217         vtkImageData    *image = _images[0];
1218
1219         int             imageDim[3];
1220         double          imageSpac[3];
1221     image->GetDimensions(imageDim);
1222     image->GetSpacing(imageSpac);
1223
1224
1225         fscanf(pFile,"%s",tmp); // NumberOfContours
1226         fscanf(pFile,"%s",tmp); // ##
1227         int numberOfContours = atoi(tmp);
1228
1229         std::vector<int> instantVector;
1230         int typeContourModel;
1231         manualBaseModel *manModelContour;
1232         int typeView;
1233
1234 /*
1235         if (compatible==true)
1236         {
1237                 int i;
1238                 for (i=0;i<numberOfContours;i++)
1239                 {
1240                         instantVector.clear();
1241                         fscanf(pFile,"%s",tmp); // Instant
1242
1243                         fscanf(pFile,"%s",tmp); // 1
1244                         instantVector.push_back( atoi(tmp) );
1245                         fscanf(pFile,"%s",tmp); // 2
1246                         instantVector.push_back( atoi(tmp) );
1247                         fscanf(pFile,"%s",tmp); // 3
1248                         instantVector.push_back( atoi(tmp) );
1249                         fscanf(pFile,"%s",tmp); // 4
1250                         instantVector.push_back( atoi(tmp) );
1251                         fscanf(pFile,"%s",tmp); // 5
1252                         instantVector.push_back( atoi(tmp) );
1253                         fscanf(pFile,"%s",tmp); // 6
1254                         instantVector.push_back( atoi(tmp) );
1255
1256
1257                         fscanf(pFile,"%s",tmp); // TypeContourModel
1258                         fscanf(pFile,"%s",tmp); // ##
1259                         typeContourModel = atoi(tmp);
1260
1261                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1262                         manModelContour->Open(pFile);
1263                         if(pFileData != NULL)
1264                         {
1265                                 manModelContour->OpenData(pFileData);
1266                         }
1267
1268                         fscanf(pFile,"%s",tmp); // TypeView
1269                         fscanf(pFile,"%s",tmp); // ##
1270                         typeView = atoi(tmp);
1271
1272                         std::string theName;
1273                         theName = kernelManager->createOutline( manModelContour, instantVector );
1274                         bool addedModel = theName.compare("") != 0;
1275                         if( addedModel )
1276                         {
1277                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1278                                 _theViewPanel->getSpacing(spc);
1279                                 //Adding the manualContourControler to interface objects structure
1280                                 //Adding the manualViewContour to interface objects structure
1281                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1282                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1283                         }
1284
1285                         if (staticContour) //StaticContours (will appear in all slices)
1286                         {
1287                                 Instant instant(&instantVector);
1288                                 kernelManager->changeContourOfManager( theName , &instant );
1289                         }
1290
1291                 }// for  numberOfContours
1292         }
1293
1294         else if (compatible==false)
1295         {
1296 */
1297
1298                 int i;
1299                 for (i=0;i<numberOfContours;i++)
1300                 {
1301                         instantVector.clear();
1302                         fscanf(pFile,"%s",tmp); // Instant
1303
1304                         fscanf(pFile,"%s",tmp); // 1
1305                         instantVector.push_back( atoi(tmp) );
1306                         fscanf(pFile,"%s",tmp); // 2
1307                         instantVector.push_back( atoi(tmp) );
1308                         fscanf(pFile,"%s",tmp); // 3
1309                         instantVector.push_back( atoi(tmp) );
1310                         fscanf(pFile,"%s",tmp); // 4
1311                         instantVector.push_back( atoi(tmp) );
1312                         fscanf(pFile,"%s",tmp); // 5
1313                         instantVector.push_back( atoi(tmp) );
1314                         fscanf(pFile,"%s",tmp); // 6
1315                         instantVector.push_back( atoi(tmp) );
1316
1317                         fscanf(pFile,"%s",tmp); // TypeContourModel
1318                         fscanf(pFile,"%s",tmp); // ##
1319                         typeContourModel = atoi(tmp);
1320
1321                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1322                         manModelContour->Open(pFile);
1323                         if(pFileData != NULL)
1324                         {
1325                                 manModelContour->OpenData(pFileData);
1326                         }
1327
1328             if (_tmpReadFileTypeOfTransformation==-1){
1329                 //nothing to do..
1330             } else if (_tmpReadFileTypeOfTransformation==0){
1331                 double transX, transY;
1332                 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];                    // X
1333                 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];                    // Y
1334                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1335             } else if (_tmpReadFileTypeOfTransformation==1) {
1336                 double transX, transY;
1337                 transX = (double) _tmpReadFileImageSpac[0]/imageSpac[0];                  // X
1338                 transY = (double) _tmpReadFileImageSpac[1]/imageSpac[1];                  // Y
1339                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1340             } else if (_tmpReadFileTypeOfTransformation==2) {  // with Z include
1341                 double transX, transY;
1342                 transX = (double) _tmpReadFileImageSpac[0]/imageSpac[0];                   // X
1343                 transY = (double) _tmpReadFileImageSpac[1]/imageSpac[1];                   // Y
1344                 instantVector[1]=instantVector[1]*_tmpReadFileImageSpac[2]/imageSpac[2];   // Z
1345                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1346             }else {
1347                     printf ("EED Warnning! wxContourMainFrame::openContours _tmpReadFileTypeOfTransformation not set. \n");
1348             }
1349
1350                         fscanf(pFile,"%s",tmp); // TypeView
1351                         fscanf(pFile,"%s",tmp); // ##
1352                         typeView = atoi(tmp);
1353
1354                         std::string theName;
1355                         theName = kernelManager->createOutline( manModelContour, instantVector );
1356                         bool addedModel = theName.compare("") != 0;
1357                         if( addedModel )
1358                         {
1359                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1360                                 _theViewPanel->getSpacing(spc);
1361                                 //Adding the manualContourControler to interface objects structure
1362                                 //Adding the manualViewContour to interface objects structure
1363                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1364                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1365                         }
1366
1367                         if (staticContour) //StaticContours (will appear in all slices)
1368                         {
1369                                 Instant instant(&instantVector);
1370                                 kernelManager->changeContourOfManager( theName , &instant );
1371                         }
1372                 }// for  numberOfContours
1373
1374 /*      }    */
1375
1376 printf ("EED wxContourMainFrame::openContours END \n");
1377
1378 }
1379
1380 void wxContourMainFrame::RefreshInterface()
1381 {
1382         changeInstant();
1383         _theViewPanel->RefreshInterface();
1384         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1385         //wxvtk2dbaseview->Refresh();
1386 }
1387
1388 vtkImageData* wxContourMainFrame::getImageData()
1389 {
1390         return _theViewPanel->getImageData();
1391 }
1392
1393 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1394 {
1395         //JCP 20-10-08 Undo redo implementation
1396         saveState();
1397         //JCP 20-10-08 Undo redo implementation
1398
1399         wxBusyCursor wait;
1400         int                                     x                                       = _theViewPanel->GetX();
1401         int                                     y                                       = _theViewPanel->GetY();
1402         int                                     z                                       = _theViewPanel->GetZ();
1403         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1404         RefreshInterface();
1405 }
1406
1407 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1408 {
1409         int typeofcontour = 1;
1410         //Image Data
1411         vtkImageData    *imagedata      = getImageData();
1412         //Tipo de pixeles a utilizar internamente en ITK
1413         typedef   float  InternalPixelType;
1414         const     unsigned int    Dimension = 2;
1415         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1416         //Tipo de pixeles de salida 1
1417         typedef unsigned char OutputPixelType;
1418         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1419         //Tipo de pixeles de salida 2
1420         typedef unsigned short OutputPixelType2;
1421         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1422         //DefiniciÛn del thresholder
1423         typedef itk::BinaryThresholdImageFilter<
1424                                                         InternalImageType,
1425                                                         OutputImageType    >    ThresholdingFilterType;
1426         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1427         typedef itk::CastImageFilter<
1428                                 OutputImageType, OutputImageType2 >  CastFilterType;
1429         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1430         typedef itk::CastImageFilter<
1431                                 OutputImageType2, InternalImageType >  CastFilterType2;
1432         //Tercer tipo de conversiÛn
1433         typedef itk::RescaleIntensityImageFilter<
1434                                                                 InternalImageType,
1435                                                                 OutputImageType >   CastFilterType3;
1436         //Cuarto tipo de conversiÛn
1437         typedef itk::RescaleIntensityImageFilter<
1438                                                                 OutputImageType,
1439                                                                 OutputImageType >   CastFilterType4;
1440         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1441         thresholder->SetLowerThreshold( 0.0 );
1442         thresholder->SetUpperThreshold( 128 );
1443         thresholder->SetOutsideValue(  255  );
1444         thresholder->SetInsideValue(  0 );
1445         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1446         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1447         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1448 //EED10JUIN2011 typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1449         ConnectorType::Pointer connector        = ConnectorType::New();
1450         ConnectorType2::Pointer connector2      = ConnectorType2::New();
1451         CastFilterType::Pointer filter   = CastFilterType::New();
1452         CastFilterType2::Pointer filter2 = CastFilterType2::New();
1453         connector->SetInput( imagedata );
1454         filter2->SetInput(connector->GetOutput());
1455         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1456                                                                 InternalImageType,
1457                                                                 InternalImageType >  SmoothingFilterType;
1458         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1459         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1460                                                                 InternalImageType,
1461                                                                 InternalImageType >  GradientFilterType;
1462         typedef   itk::SigmoidImageFilter<
1463                                                                 InternalImageType,
1464                                                                 InternalImageType >  SigmoidFilterType;
1465         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1466         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1467         sigmoid->SetOutputMinimum(  0.0  );
1468         sigmoid->SetOutputMaximum(  255.0  );
1469         typedef  itk::FastMarchingImageFilter<
1470                                                                 InternalImageType,
1471                                                                 InternalImageType >    FastMarchingFilterType;
1472         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1473         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1474                                         InternalImageType >    GeodesicActiveContourFilterType;
1475         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1476                                                                                 GeodesicActiveContourFilterType::New();
1477         typedef  itk::ZeroCrossingImageFilter<
1478                                                                 InternalImageType,
1479                                                                 InternalImageType >    ZeroCrossingFilterType;
1480         ZeroCrossingFilterType::Pointer zeroCrossing =
1481                                                         ZeroCrossingFilterType::New();
1482         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1483         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1484         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1485         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1486         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1487         int it=atoi(  crea::wx2std(iter).c_str() );
1488         geodesicActiveContour->SetNumberOfIterations( it );
1489         smoothing->SetInput( filter2->GetOutput() );
1490         gradientMagnitude->SetInput( smoothing->GetOutput() );
1491         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1492         fastMarching->SetInput( sigmoid->GetOutput() );
1493         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1494         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1495         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1496         //thresholder->SetInput( zeroCrossing->GetOutput() );
1497         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1498         connector2->SetInput( thresholder->GetOutput()  );
1499         smoothing->SetTimeStep( 0.125 );
1500         smoothing->SetNumberOfIterations(  5 );
1501         smoothing->SetConductanceParameter( 9.0 );
1502         const double sigma      = atof(  crea::wx2std(sigm).c_str() );
1503         gradientMagnitude->SetSigma(  sigma  );
1504         const double alpha      =  atof(  crea::wx2std(alf).c_str() );
1505         const double beta       =  atof(  crea::wx2std(bet).c_str() );
1506         sigmoid->SetAlpha( alpha );
1507         sigmoid->SetBeta(  beta  );
1508         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1509         typedef FastMarchingFilterType::NodeType       NodeType;
1510         NodeContainer::Pointer seeds = NodeContainer::New();
1511         InternalImageType::IndexType  seedPosition;
1512         seedPosition[0]         = x;
1513         seedPosition[1]         = y;
1514         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1515         NodeType node;
1516         const double seedValue = - initialDistance;
1517         node.SetValue( seedValue );
1518         node.SetIndex( seedPosition );
1519         seeds->Initialize();
1520         seeds->InsertElement( 0, node );
1521         fastMarching->SetTrialPoints( seeds );
1522         fastMarching->SetSpeedConstant( 1.0 );
1523         fastMarching->SetOutputSize( connector->GetOutput()->GetBufferedRegion().GetSize() );
1524         fastMarching->SetStoppingValue( 800 );
1525         try
1526     {
1527 //              connector2->Update();
1528                 vtkImageData *idata = NULL;
1529                 idata                           = connector2->GetOutput();
1530                 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1531                 cntVTK->SetNumberOfContours( 1 );
1532                 cntVTK->SetValue( 0, 255 );
1533 //EED 2017-01-01 Migration VTK7
1534 #if VTK_MAJOR_VERSION <= 5
1535                 cntVTK->SetInput( idata );
1536                 cntVTK->Update( );
1537                 cntVTK->UpdateInformation();
1538 #else
1539                 cntVTK->SetInputData( idata );
1540 #endif
1541                 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1542 //EED 2017-01-01 Migration VTK7
1543 #if VTK_MAJOR_VERSION <= 5
1544                 cpd->SetInput( cntVTK->GetOutput( ) );
1545                 cpd->Update( );
1546                 cpd->UpdateInformation();
1547 #else
1548                 cpd->SetInputData( cntVTK->GetOutput( ) );
1549 #endif
1550                 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1551                 conn->SetExtractionModeToLargestRegion( );
1552 //EED 2017-01-01 Migration VTK7
1553 #if VTK_MAJOR_VERSION <= 5
1554                 conn->SetInput( cpd->GetOutput( ) );
1555                 conn->Update( );
1556                 conn->UpdateInformation();
1557 #else
1558                 conn->SetInputData( cpd->GetOutput( ) );
1559 #endif
1560                 vtkStripper* vtkstripper = vtkStripper::New( );
1561 //EED 2017-01-01 Migration VTK7
1562 #if VTK_MAJOR_VERSION <= 5
1563                 vtkstripper->SetInput( conn->GetOutput() );
1564                 vtkstripper->Update();
1565                 vtkstripper->UpdateInformation();
1566 #else
1567                 vtkstripper->SetInputData( conn->GetOutput() );
1568                 cntVTK->Update();
1569 #endif
1570                 vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1571                 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1572
1573 //EED 2017-01-01 Migration VTK7
1574 #if VTK_MAJOR_VERSION <= 5
1575                 polyDataResult->Update( );
1576                 polyDataResult->UpdateInformation();
1577 #else
1578         // ..
1579 #endif
1580                 cntVTK          -> Delete();
1581                 cpd                     -> Delete();
1582                 conn            -> Delete();
1583                 //--Calculating control points
1584                 std::vector<double> vecX;
1585                 std::vector<double> vecY;
1586                 std::vector<double> vecXo;
1587                 std::vector<double> vecYo;
1588                 std::vector<double>::iterator vecXoi;
1589                 std::vector<double>::iterator vecYoi;
1590                 std::vector<double> vecZ;
1591                 std::vector<double> vecCtrlPointX;
1592                 std::vector<double> vecCtrlPointY;
1593                 std::vector<double> vecCtrlPointZ;
1594                 double *p;
1595                 double xAct=0;
1596                 double yAct=0;
1597                 int ii,size=polyDataResult->GetNumberOfPoints();
1598                 ofstream myfile;
1599                 myfile.open ("C:/Creatis/example2.txt");
1600                 size=polyDataResult->GetNumberOfPoints();
1601                 for (ii=0;ii<size;ii++)
1602                 {
1603                         if(ii==0)
1604                         {
1605                                 xAct=x;
1606                                 yAct=y;
1607                         }
1608                         p       = polyDataResult->GetPoint(ii);
1609                         double x=p[0];
1610                         double y=p[1];
1611 //                      if(fabs(yAct-y)>20)
1612 //                      {
1613 //                              if((xAct-x)>1 || (xAct-x)<-1)
1614 //                              {
1615 //                                      vecX.push_back( p[0] );
1616 //                                      vecY.push_back( p[1] );
1617 //                                      myfile <<p[0]<<","<<p[1]<<"\n";
1618 //                                      std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1619 //                                      std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1620 //                                      std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1621 //                                      vecZ.push_back( 900 );
1622 //                                      xAct=x;
1623 //                                      yAct=y;
1624 //                              } else {
1625 //                                      vecXo.push_back(p[0]);
1626 //                                      vecYo.push_back(p[1]);
1627 //                              }
1628 //                      } else
1629
1630                         if(fabs(xAct-x)>11)
1631                         {
1632                                 vecXo.push_back(p[0]);
1633                                 vecYo.push_back(p[1]);
1634                         } else {
1635                                 vecX.push_back( p[0] );
1636                                 myfile <<p[0]<<","<<p[1]<<"\n";
1637                                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1638                                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1639                                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1640                                 vecY.push_back( p[1] );
1641 //EED 2017-12-16
1642                                 vecZ.push_back( -900 );
1643                                 xAct = x;
1644                                 yAct = y;
1645                         } // if xAct
1646
1647
1648                 } // for
1649
1650                 while(!vecXo.empty())
1651                 {
1652                         vecX.push_back(vecXo.back());
1653                         //std::cout<<" x Siguiente "<<vecXo.back();
1654                         vecXo.pop_back();
1655         //EED 2017-12-16
1656                         vecZ.push_back( -900 );
1657                 }
1658                 while(!vecYo.empty())
1659                 {
1660                         vecY.push_back(vecYo.back());
1661                                 vecYo.pop_back();
1662                 }
1663                 myfile.close();
1664
1665 //              for(int l=0;l<vecX.size();l++)
1666 //              {
1667 //                      if(l==0)
1668 //                      {
1669 //                vecXo.push_back(p[0]);
1670 //                              vecYo.push_back(p[1]);
1671 //                      } else {
1672 //                              if(vecXoi[l-1]==)
1673 //                              {
1674 //                              }
1675 //                      } // if
1676 //              } // for
1677
1678                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1679                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1680
1681                 int method=2;
1682                 if (method==0)
1683                 {
1684                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1685                 } else if (method==1){
1686                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1687                 } else if (method==2){
1688                         extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1689                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1690                 }
1691                 //--Adding contour to the system
1692
1693                 std::vector<int> actualInstantVector;
1694                 _instantPanel->getInstant( actualInstantVector );
1695                 actualInstantVector[1]=z;
1696
1697                 int j,sizeCtrPt = vecCtrlPointX.size();
1698
1699                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1700                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1701                 if (sizeCtrPt>=3){
1702                         for (j=0 ; j<sizeCtrPt ; j++)
1703                         {
1704                                 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1705                         } // for
1706                         std::string theName;
1707                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1708                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1709                         bool addedModel = theName.compare("") != 0;
1710                         if( addedModel )
1711                         {
1712                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1713                                 _theViewPanel->getSpacing(spc);
1714                                 //Adding the manualContourControler to interface objects structure
1715                                 //Adding the manualViewContour to interface objects structure
1716                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1717                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1718                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1719                         }       // if addedModel
1720                 } // if sizeCtrPt
1721
1722     }   catch( itk::ExceptionObject & excep ) {
1723                 std::cerr << "Exception caught !" << std::endl;
1724                 std::cerr << excep << std::endl;
1725     } // try
1726
1727 }
1728
1729 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1730
1731         //JCP 20-10-08 Undo redo implementation
1732         saveState();
1733         //JCP 20-10-08 Undo redo implementation
1734
1735         wxBusyCursor wait;
1736         int                                     x                                       = _theViewPanel->GetX();
1737         int                                     y                                       = _theViewPanel->GetY();
1738         int                                     z                                       = _theViewPanel->GetZ();
1739         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1740         RefreshInterface();
1741 }
1742
1743
1744 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1745 {
1746
1747 printf("EED wxContourMainFrame::SegmentationOneSlice Start=%d  %d\n",sampling,method );
1748 printf("EED wxContourMainFrame::SegmentationOneSlice %d %d %d  \n",x,y,z );
1749
1750         int typeofcontour = 1;
1751         //--Extracting Contour
1752         vtkImageData    *imagedata      = getImageData();
1753
1754         vtkImageReslice *imageReslice = vtkImageReslice::New();
1755 //EED
1756                 double spc[3];
1757                 imagedata->GetSpacing(spc);
1758                 x = x*spc[0];
1759                 y = y*spc[1];
1760                 z = z;
1761
1762 //EED 2017-01-01 Migration VTK7
1763 #if VTK_MAJOR_VERSION <= 5
1764         imageReslice->SetInput( imagedata );
1765 #else
1766         imageReslice->SetInputData( imagedata );
1767 #endif
1768         imageReslice->SetInformationInput(imagedata);
1769         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1770         imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
1771         imageReslice->SetOutputDimensionality(2);
1772         imageReslice->SetInterpolationModeToLinear();
1773
1774 //EED 2017-01-01 Migration VTK7
1775 #if VTK_MAJOR_VERSION <= 5
1776         // ..
1777 #else
1778         imageReslice->Update();
1779 #endif
1780
1781         imagedata = imageReslice->GetOutput();
1782 //EED 2017-01-01 Migration VTK7
1783 #if VTK_MAJOR_VERSION <= 5
1784         imagedata->Update();
1785         imagedata->UpdateInformation();
1786 #else
1787         // ..
1788 #endif
1789
1790         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1791 //EED 2017-01-01 Migration VTK7
1792 #if VTK_MAJOR_VERSION <= 5
1793         cntVTK->SetInput( imagedata );
1794 #else
1795         cntVTK->SetInputData( imagedata );
1796 #endif
1797
1798         cntVTK->SetNumberOfContours( 1 );
1799         //cntVTK->SetValue( 0, vmin );
1800 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1801         cntVTK->SetValue( 1, isovalue );
1802 //      cntVTK->SetValue( 1, vmax );
1803         cntVTK->Update( );
1804         cntVTK->UpdateInformation();
1805
1806         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1807 //EED 2017-01-01 Migration VTK7
1808 #if VTK_MAJOR_VERSION <= 5
1809         cpd->SetInput( cntVTK->GetOutput( ) );
1810 #else
1811         cpd->SetInputData( cntVTK->GetOutput( ) );
1812 #endif
1813         cpd->ConvertLinesToPointsOff( );
1814         cpd->Update( );
1815         cpd->UpdateInformation();
1816
1817         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1818
1819 //      conn->SetExtractionModeToPointSeededRegions();
1820 //      conn->SetExtractionModeToCellSeededRegions();
1821 //      conn->SetExtractionModeToSpecifiedRegions();
1822 //      conn->SetExtractionModeToLargestRegion();
1823 //      conn->SetExtractionModeToAllRegions();
1824
1825         conn->SetExtractionModeToClosestPointRegion();
1826
1827         //conn->SetMaxRecursionDepth( 3000 );
1828
1829 //EED 2017-01-01 Migration VTK7
1830 #if VTK_MAJOR_VERSION <= 5
1831         conn->SetInput( cpd->GetOutput( ) );
1832 #else
1833         conn->SetInputData( cpd->GetOutput( ) );
1834 #endif
1835
1836         conn->SetClosestPoint( x, y, 0 );
1837         conn->Update( );
1838         conn->UpdateInformation();
1839
1840         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1841 //EED 2017-01-01 Migration VTK7
1842 #if VTK_MAJOR_VERSION <= 5
1843         cpd2->SetInput( conn->GetOutput( ) );
1844 #else
1845         cpd2->SetInputData( conn->GetOutput( ) );
1846 #endif
1847         cpd2->Update();
1848         cpd2->UpdateInformation();
1849
1850         vtkStripper* vtkstripper = vtkStripper::New( );
1851 vtkstripper->SetJoinContiguousSegments(true);
1852         vtkstripper->SetMaximumLength(20000);
1853 //EED 2017-01-01 Migration VTK7
1854 #if VTK_MAJOR_VERSION <= 5
1855         vtkstripper->SetInput( cpd2->GetOutput() );
1856 #else
1857         vtkstripper->SetInputData( cpd2->GetOutput() );
1858 //      vtkstripper->SetInputData( cntVTK->GetOutput() );
1859
1860 #endif
1861         vtkstripper->Update();
1862         vtkstripper->UpdateInformation();
1863
1864
1865         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1866
1867 //EED 2017-01-01 Migration VTK7
1868 #if VTK_MAJOR_VERSION <= 5
1869         polyDataResult->Update( );
1870         polyDataResult->UpdateInformation();
1871 #else
1872         //...
1873 #endif
1874
1875 /* EED
1876 ofstream myfile;
1877 myfile.open ("c:/temp/example.txt");
1878 myfile << "\n";
1879 polyDataResult->Print(myfile);
1880 myfile << "-------------------------------------\n";
1881 polyDataResult->GetLines()->Print(myfile);
1882 myfile.close();
1883 */
1884         cntVTK  -> Delete();
1885         cpd2    -> Delete();
1886         cpd             -> Delete();
1887         conn    -> Delete();
1888
1889 //--Calculating control points
1890         std::vector<double> vecX;
1891         std::vector<double> vecY;
1892         std::vector<double> vecZ;
1893         std::vector<double> vecCtrlPointX;
1894         std::vector<double> vecCtrlPointY;
1895         std::vector<double> vecCtrlPointZ;
1896
1897 printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
1898
1899 int numberOfPointsInCell;
1900 int numberOfcells=polyDataResult->GetNumberOfCells();
1901 for (int jj=0; jj<numberOfcells ; jj++)
1902 {
1903         vtkCell* vtkcell = polyDataResult->GetCell( jj );
1904         numberOfPointsInCell=vtkcell->GetNumberOfPoints();
1905         printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d  points=%d \n",jj,numberOfPointsInCell );
1906 }// for jj
1907
1908 printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
1909
1910 polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
1911
1912
1913         if (polyDataResult->GetNumberOfCells()>0)
1914         {
1915                 double *p;
1916         printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
1917                 vtkCell* vtkcell = polyDataResult->GetCell( 0 );
1918         printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
1919         //      int ii,size=polyDataResult->GetNumberOfPoints();
1920                 int ii,size=vtkcell->GetNumberOfPoints();
1921         printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
1922                 int id;
1923                 for (ii=0;ii<size;ii++)
1924                 {
1925         //              id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1926         //              p       = polyDataResult->GetPoint(id);
1927                         p       = vtkcell->GetPoints()->GetPoint(ii);
1928
1929         printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d  px=%f py=%f\n",ii,id, p[0],p[1]);
1930         //              double x=p[0];
1931         //              double y=p[1];
1932                         vecX.push_back( p[0] );
1933                         vecY.push_back( p[1] );
1934         //EED 2017-12-16
1935                         vecZ.push_back( -900 );
1936         //                      vecZ.push_back( p[2] );
1937                 }
1938
1939                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1940                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1941
1942         //PROOFS
1943                 /*if (methodRadiobox->GetSelection()==0){
1944                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1945                 }
1946                 if (methodRadiobox->GetSelection()==1){
1947                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1948                 }
1949                 if (methodRadiobox->GetSelection()==2){
1950                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1951                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1952                 }*/
1953
1954                 if (method==0)
1955                 {
1956                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1957                 } else if (method==1){
1958                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1959                 } else if (method==2){
1960                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1961                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1962                 }
1963
1964                 //--Adding contour to the system
1965                 std::vector<int> actualInstantVector;
1966                 _instantPanel->getInstant( actualInstantVector );
1967                 actualInstantVector[1]=z;
1968
1969                 int j,sizeCtrPt = vecCtrlPointX.size();
1970                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1971                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
1972                 manModelContour->SetLabel2( std::to_string(z) );
1973                 if (sizeCtrPt>=3)
1974                 {
1975                         for (j=0 ; j<sizeCtrPt ; j++)
1976                         {
1977                                 manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
1978                         } // for
1979                         std::string theName;
1980                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1981                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1982                         bool addedModel = theName.compare("") != 0;
1983                         if( addedModel )
1984                         {
1985                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1986                                 _theViewPanel->getSpacing(spc);
1987                                 //Adding the manualContourControler to interface objects structure
1988                                 //Adding the manualViewContour to interface objects structure
1989                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1990                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1991                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1992                         }       // if addedModel
1993                 } // if sizeCtrPt
1994         } // if NumberOfCells > 0
1995
1996 printf("EED wxContourMainFrame::SegmentationOneSlice  End\n");
1997 }
1998
1999 int wxContourMainFrame::GetImageDataSizeZ()
2000 {
2001         return _theViewPanel->GetImageDataSizeZ();
2002 }
2003
2004 void wxContourMainFrame::GetImageDataRange(double *range)
2005 {
2006         _theViewPanel->GetImageDataRange(range);
2007 }
2008
2009 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
2010 {
2011         //JCP 20-10-08 Undo redo implementation
2012         saveState();
2013         //JCP 20-10-08 Undo redo implementation
2014
2015         wxBusyCursor wait;
2016         int                                     x = _theViewPanel->GetX();
2017         int                                     y = _theViewPanel->GetY();
2018         int                             z;
2019         double                          porcent;
2020         wxString                        tmpString;
2021         double                          totalZ = maxZ-minZ+1;
2022         for( z=minZ ; z<=maxZ ; z++ )
2023         {
2024                 porcent = 100.0* (z-minZ)/totalZ;
2025                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2026                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2027                 //_staticTextSegmentation->SetLabel(tmpString);
2028                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2029         }
2030         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2031         RefreshInterface();
2032 }
2033
2034
2035 //Creates a reference line to be used as the axis of the mirroring
2036 void wxContourMainFrame::referenceLine()
2037 {
2038         if (_refLineControl==NULL)
2039         {
2040                 wxBusyCursor wait;
2041                 double spc[3];
2042
2043                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2044                 vtkimagedata->GetSpacing(spc);
2045
2046                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2047
2048                 _refLineControl = new manualLineControler();
2049                 _refLineModel   = new manualContourModelLine();
2050                 _refLineView = new manualViewLine();
2051                 _refLineView->SetModel( _refLineModel );
2052                 _refLineView->SetWxVtkBaseView( viewer2D );
2053                 _refLineView->SetRange( 2 );
2054                 _refLineView->SetZ( 1200 );
2055
2056                 _refLineView->SetSpacing(spc);
2057
2058                 _refLineView->SetColorNormalContour(0, 0, 1);
2059                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2060                 _refLineView->SetWidthLine(4);
2061
2062                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2063                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2064                 style->AddInteractorStyleMaracas( _refLineControl );
2065                 _refLineModel->SetCloseContour(false);
2066                 _refLineControl->CreateNewManualContour();
2067
2068 //AD: Inicializar el mirroring con una linea ya pintada
2069         /*
2070                 double z = _refLineControl->GetZ();
2071
2072                 int imageDim[3];
2073                 image->GetDimensions(imageDim);
2074                 double x = (double) imageDim[0]/2;
2075                 double y1 = (double) (imageDim[1]/2)+15;
2076                 double y2 = (double) (imageDim[1]/2)-15;
2077
2078                 _refLineControl->AddPoint(x,y1,z);
2079                 _refLineControl->AddPoint(x,y2,z);
2080                 _refLineControl->SetCompleteCreation(true);
2081
2082                 _refLineModel->AddPoint(x,y1,z);
2083                 _refLineModel->AddPoint(x,y2,z);
2084                 _refLineModel->UpdateSpline();
2085
2086                 _refLineView->UpdateViewPoint(0);
2087                 _refLineView->UpdateViewPoint(1);
2088         */
2089
2090                 _refLineControl->SetActive(true);
2091                 _refLineView->RefreshContour();
2092         }
2093 }
2094
2095 //Hides the referenceLine
2096 void wxContourMainFrame::refLineHide()
2097 {
2098         if (_refLineControl!=NULL)
2099         {
2100                 if (_refLineControl->GetActive())
2101                 {
2102                         _refLineView->RemoveCompleteContourActor();
2103                         _refLineControl->SetEditable(false);
2104                         _refLineControl->SetActive(false);
2105
2106                         RefreshInterface();
2107                 }
2108         }
2109 }
2110
2111 //Shows the referenceLine
2112 void wxContourMainFrame::refLineShow()
2113 {
2114         if (_refLineControl!=NULL)
2115         {
2116                 if (_refLineControl->GetActive()==false)
2117                 {
2118                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2119
2120                         _refLineView->SetModel( _refLineModel );
2121                         _refLineView->SetWxVtkBaseView( viewer2D );
2122                         _refLineView->SetRange( 2 );
2123                         _refLineView->SetZ( 1200 );
2124
2125                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2126                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2127                         style->AddInteractorStyleMaracas( _refLineControl );
2128                         _refLineControl->CreateNewManualContour();
2129                         _refLineControl->SetActive(true);
2130                         _refLineView->RefreshContour();
2131
2132                         RefreshInterface();
2133                 }
2134         }
2135 }
2136
2137 void wxContourMainFrame::refLineChangeWidth(int width)
2138 {
2139         _refLineView->SetWidthLine(width);
2140         _refLineView->RefreshContour();
2141
2142         RefreshInterface();
2143 }
2144
2145
2146 void wxContourMainFrame::onMirror()
2147 {
2148         //AD:02-09
2149         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2150         std::vector<std::string> filterCurrentSelection;
2151
2152         std::vector<int> tempVector;
2153         _instantPanel->getInstant( tempVector );
2154     _performingOperation->reset();
2155         _performingOperation->setStartCommand( COPY );
2156         _performingOperation->setStartOperationInstantVector( tempVector );
2157         _performingOperation->setKeyNamesOperationElems( currentSelection );
2158
2159         char theStartCommand = _performingOperation->getStartCommand();
2160         if (  theStartCommand == COPY )
2161         {
2162                 //JCP 20-10-08 Undo redo implementation
2163                 saveState();
2164                 //JCP 20-10-08 Undo redo implementation
2165                 std::vector<int> tempVector;
2166                 _instantPanel->getInstant( tempVector );
2167                 _performingOperation->setEndOperationInstantVector ( tempVector );
2168                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2169                 int i,size = elems.size();
2170                 for( i=0; i<size; i++ )
2171                 {
2172                         createMirrorContourOf( elems[i], tempVector, i>0 );
2173                 }
2174         }
2175
2176         //deleteContour( _refName );
2177         //_refName = "";
2178 }
2179
2180
2181 void wxContourMainFrame::showAxis(bool show)
2182 {
2183         _theViewPanel->SetVisibleAxis(show);
2184         _theViewPanel->Refresh();
2185 }
2186
2187
2188 void wxContourMainFrame::onRigidPressed(){
2189         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2190         int elementsSelected = currentSelection.size();
2191
2192         if ( elementsSelected >= 1 ){
2193                 //JCP 20-10-08 Undo redo implementation
2194                 saveState();
2195                 //JCP 20-10-08 Undo redo implementation
2196
2197                 std::vector<int> tempVector;
2198                 _instantPanel->getInstant( tempVector );
2199                 Instant instant(&tempVector);
2200
2201                 int i , size=currentSelection.size();
2202                 for ( i=0 ; i<size ; i++ )
2203                 {
2204                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2205                 } // i
2206         }
2207 }
2208
2209 void wxContourMainFrame::onWidthOfContour(double width){
2210
2211         _theViewPanel->removeSceneContours();
2212         _theViewPanel->SetWidthContour(width);
2213
2214         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2215
2216         RefreshInterface();
2217 }
2218
2219 int wxContourMainFrame::getColorWindow()
2220 {
2221         /*
2222         double range[2];
2223         vtkImageData * img = getImageData();
2224         img->GetScalarRange(range);
2225
2226         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2227
2228         return (int)range[1];
2229         */
2230         return _theViewPanel->getColorWindow();
2231 }
2232
2233 int wxContourMainFrame::getWindowLevel()
2234 {
2235         /*
2236         double range[2];
2237         vtkImageData * img = getImageData();
2238         img->GetScalarRange(range);
2239
2240         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2241
2242         return (int)range[1];
2243         */
2244         return _theViewPanel->getWindowLevel();
2245 }
2246
2247 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
2248 {
2249         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2250
2251         RefreshInterface();
2252 }
2253
2254 void wxContourMainFrame::onInterpolation(bool interpolate)
2255 {
2256         _theViewPanel->onInterpolation(interpolate);
2257         RefreshInterface();
2258 }
2259
2260 void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
2261 {
2262         _theViewPanel->onBeforeAfterContour(before,after);
2263         RefreshInterface();
2264 }
2265
2266 void wxContourMainFrame::onJumpSlice(int step, int shift)
2267 {
2268         std::vector<int> tempVector;
2269         _instantPanel->getInstant( tempVector );
2270         int ss  = abs(step);
2271         int pos         = tempVector[1];
2272         int maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2273         pos=(pos/ss)*ss+step+shift;
2274         if ((pos>=0) && (pos<maxZ))
2275         {
2276                 tempVector[1]=pos;
2277                 _instantPanel->setInstant( tempVector );
2278                 RefreshInterface();
2279         } // if pos
2280 }
2281
2282 void wxContourMainFrame::onShowTextContour(bool show)
2283 {
2284         _theViewPanel->onShowTextContour(show);
2285         RefreshInterface();
2286 }
2287
2288 void wxContourMainFrame::onChangeInstant(std::string name,int actual)
2289 {
2290         _instantPanel->setConceptValue( name, actual );
2291 }
2292
2293 void wxContourMainFrame::resetAppend()
2294 {
2295         kernelManager->resetAppend();
2296 }
2297
2298 void wxContourMainFrame::onSpreadAdd()
2299 {
2300         std::vector<double> vecX;
2301         std::vector<double> vecY;
2302         std::vector<double> vecZ;
2303         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2304         std::vector<int> tempVector;
2305         _instantPanel->getInstant( tempVector );
2306         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2307         interfMainPanel::getInstance()->appendStringSpread(val);
2308 }
2309
2310
2311 void wxContourMainFrame::onSpreadAddAll()
2312 {
2313 //EED02
2314         std::vector<int> tempVector;
2315         _instantPanel->getInstant( tempVector );
2316         int minZ,maxZ;
2317     minZ        = 0;
2318     maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2319         int z;
2320         int sizeLstContourThings;
2321         for ( z=minZ ; z<=maxZ ; z++ )
2322         {
2323                 tempVector[1]=z;
2324                 Instant instant(&tempVector);
2325                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2326                 sizeLstContourThings = lstContourThings.size();
2327                 if (sizeLstContourThings>=1)
2328         {
2329             std::vector<double> vecX;
2330             std::vector<double> vecY;
2331             std::vector<double> vecZ;
2332             ContourThing **contourthing = lstContourThings[0];
2333                         manualBaseModel *cModel                         =  (*contourthing)->getModel();
2334                         int i,size = cModel->GetNumberOfPointsSpline();
2335                         double x,y,z;
2336                         for (i=0; i<size; i++)
2337                         {
2338                                 cModel->GetSpline_i_Point(i, &x, &y, &z);
2339                                 vecX.push_back(x);
2340                                 vecY.push_back(y);
2341                                 vecZ.push_back(z);
2342                         } // for i
2343             std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2344             interfMainPanel::getInstance()->appendStringSpread(val);
2345         }// if sizeLstContourThings
2346     } // for z
2347 }
2348
2349
2350 void wxContourMainFrame::onSpreadGo(int type)
2351 {
2352         //JCP 20-10-08 Undo redo implementation
2353         saveState();
2354         //JCP 20-10-08 Undo redo implementation
2355         wxBusyCursor wait;
2356         std::vector<double> vecCtrlPointX;
2357         std::vector<double> vecCtrlPointY;
2358         std::vector<double> vecCtrlPointZ;
2359         double  minZ,maxZ;
2360         int z;
2361
2362         std::vector<int> tempVector;
2363         _instantPanel->getInstant( tempVector );
2364 //              tempVector[1];
2365
2366         kernelManager->getMaxMinZ(&minZ,&maxZ);
2367 //JSTG_16-07-08_----------------------------------------------------------------
2368         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2369         kernelManager->CalculeSplinePropagation();
2370
2371         double          totalZ = maxZ-minZ+1;
2372         double          porcent;
2373         wxString        tmpString;
2374 //--------------------------------------------------------------------
2375         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2376         {
2377                 porcent = 100.0* (z-minZ)/totalZ;
2378                 int numero = (int)(z-minZ+1)/(int)totalZ;
2379                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2380
2381                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2382
2383                 int typeofcontour = 1;
2384                 std::string theName;
2385                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2386
2387                 if( manModelContour!=NULL ){
2388                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2389                         this->_theViewPanel->getSpacing(spc);
2390                         //Adding the manualContourControler to interface objects structure
2391                         //Adding the manualViewContour to interface objects structure
2392                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2393                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2394                 } // if addedModel
2395         }
2396         if(z > maxZ){
2397                 porcent = 100.0;
2398                 int numero = (int)(z-minZ+1)/(int)totalZ;
2399                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2400
2401                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2402         }// for z
2403         //RefreshInterface();
2404 }
2405
2406 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
2407 {
2408         _instantPanel->getInstant( tempVector );
2409 }
2410
2411 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
2412 {
2413         std::vector<int> tempVector;
2414         _instantPanel->getInstant(tempVector);
2415         //Asignation of slide number should be different ex by name
2416         tempVector[1]=slide;
2417         return kernelManager->getOutlinesNameAtInstant(tempVector);
2418 }
2419
2420
2421 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2422 {
2423         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2424 }
2425
2426
2427 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2428 {
2429
2430         wxString tempString;
2431         int maxContourGroup     =       0;
2432
2433         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2434
2435         std::vector<manualBaseModel*> lstManConMod;
2436         std::vector<manualBaseModel*> lstManConModTmp;
2437         std::vector<manualBaseModel*> lstManConModExp;
2438         std::vector<double> pLstValue;
2439         std::vector<double> pLstValuePosX;
2440         std::vector<double> pLstValuePosY;
2441         std::vector<double> pLstValuePosZ;
2442
2443         int             resultSize;
2444         int             resultGrayRangeCount;
2445         double  resultMin;
2446         double  resultMax;
2447         double  resultAverage;
2448         double  resultStandardeviation;
2449
2450         std::vector<int> tempVector;
2451         _instantPanel->getInstant( tempVector );
2452
2453         int z;
2454         int ii,sizeLstContourThings;
2455
2456
2457         int minZ,maxZ;
2458         double totalZ;
2459         double porcent;
2460         wxString tmpString;
2461
2462
2463         if (selection==0 ) // actual slice
2464         {
2465                 int actualSlice = tempVector[1];
2466                 minZ    = actualSlice;
2467                 maxZ    = actualSlice;
2468         }       else  {  // slice range
2469                 minZ    = minimumZ;
2470                 maxZ    = maximumZ;
2471         }
2472
2473
2474         totalZ  = maxZ-minZ+1;
2475
2476         _contourextractdata->InitVolumeStatistics();
2477
2478 // For each slice..
2479         for ( z=minZ ; z<=maxZ ; z++ )
2480         {
2481
2482                 porcent = 100.0* (z-minZ)/totalZ;
2483                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2484
2485                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2486                 //_staticTextInformation->SetLabel(tmpString);
2487
2488                 //Extraction data from contours of each slice
2489                 _contourextractdata->SetZtoBeAnalys(z);
2490
2491                 tempVector[1]=z;
2492                 Instant instant(&tempVector);
2493                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2494                 sizeLstContourThings = lstContourThings.size();
2495
2496                 lstManConMod.clear();
2497                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2498                 {
2499                         ContourThing **contourthing = lstContourThings[ii];
2500                         lstManConMod.push_back( (*contourthing)->getModel() );
2501                 }
2502
2503                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2504
2505                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2506                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2507                 //_grid->SetRowLabelValue(z, tempString );
2508 //EED004
2509                 int iContourGroup,sizeContourGroup;
2510                 if (typeContourGroup==3) // contour separete
2511                 {
2512                         sizeContourGroup=lstManConModExp.size();
2513                         if ( maxContourGroup<sizeContourGroup )
2514                         {
2515                                 maxContourGroup=sizeContourGroup;
2516                         }
2517                 } else {  // contour AND OR XOR
2518                         sizeContourGroup=1;
2519                         maxContourGroup=1;
2520                 }
2521
2522                 int tmpIntA;
2523
2524                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2525                         lstManConModTmp.clear();
2526
2527
2528
2529                         if (typeContourGroup==3) // contour separete
2530                         {
2531                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2532                         } else {  // contour AND OR XOR
2533                                 lstManConModTmp = lstManConModExp;
2534                         }
2535
2536                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2537                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2538
2539                         pLstValue.clear();
2540                         pLstValuePosX.clear();
2541                         pLstValuePosY.clear();
2542                         pLstValuePosZ.clear();
2543
2544
2545                         int numberOfPixels;
2546                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2547                                                                                                                 &pLstValue,
2548                                                                                                                 &pLstValuePosX,
2549                                                                                                                 &pLstValuePosY,
2550                                                                                                                 &pLstValuePosZ);
2551
2552                         resultSize=numberOfPixels;
2553                         // Statistics of each slice.
2554                         _contourextractdata->Statistics( &pLstValue,
2555                                                                                         grayRangeMin,
2556                                                                                         grayRangeMax,
2557                                                                                         &resultGrayRangeCount,
2558                                                                                         &resultSize,
2559                                                                                         &resultMin,
2560                                                                                         &resultMax,
2561                                                                                         &resultAverage,
2562                                                                                         &resultStandardeviation);
2563
2564                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2565                         {
2566                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2567                         }
2568
2569                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2570
2571                         tempString.Printf(_T("%d"),numberOfPixels);
2572
2573                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2574
2575                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2576                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2577
2578                         tempString.Printf(_T("%f"),resultMin);
2579                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2580
2581                         tempString.Printf(_T("%f"),resultMax);
2582                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2583
2584                         tempString.Printf(_T("%f"),resultAverage);
2585                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2586
2587                         tempString.Printf(_T("%f"),resultStandardeviation);
2588                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2589
2590
2591                 } // for iContourGroup
2592         } // for z
2593
2594         // Print Volume Statistics
2595
2596
2597         int             vol_rCountRange;
2598         int             vol_rsize;
2599         double  vol_minValue;
2600         double  vol_maxValue;
2601         double  vol_average;
2602         double  vol_standardeviation;
2603
2604         if (selection!=0 ) // actual slice
2605         {
2606
2607                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2608                                                                                                  &vol_minValue, &vol_maxValue,
2609                                                                                                  &vol_average, &vol_standardeviation);
2610
2611                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2612
2613                 tempString.Printf(_T("%d"),vol_rsize);
2614                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2615
2616                 tempString.Printf(_T("%d"),vol_rCountRange);
2617                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2618
2619                 tempString.Printf(_T("%f"),vol_minValue);
2620                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2621
2622                 tempString.Printf(_T("%f"),vol_maxValue);
2623                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2624
2625                 tempString.Printf(_T("%f"),vol_average);
2626                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2627
2628                 tempString.Printf(_T("%f"),vol_standardeviation);
2629                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2630         }
2631         //-----------------------------------------
2632
2633         int iTitleGroup;
2634         wxString tmpTitleString;
2635         int tmpIntB;
2636         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2637         {
2638                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2639                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2640                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2641
2642                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2643                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2644                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2645                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2646                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2647                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2648                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2649         }// for title
2650         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2651 }
2652
2653 //AD: 29-05-09
2654 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2655         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2656 {
2657         if (XYZValues)
2658         {
2659                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2660         }
2661
2662         if (contourImage)
2663         {
2664                 vtkImageData * mask;
2665                 vtkImageData * value;
2666                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2667                 this->SaveImageResult( directory , namefile, mask, value);
2668         }
2669
2670         if (statistics)
2671         {
2672                 std::ostringstream name;
2673                 name << filename << ".xls";
2674
2675
2676                 FILE *pFile=fopen(name.str().c_str(),"w+");
2677
2678
2679                 wxString tmpString;
2680                 int i,j,maxX;
2681
2682 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2683 //              int maxY=sizeZ+2;
2684
2685                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2686
2687                 // -- Title --
2688                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2689                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2690                 {
2691                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2692                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2693                 }
2694                 fprintf(pFile,"\n\n" );
2695
2696
2697
2698                 if (selection==0 ) // actual slice
2699                 {
2700                         std::vector<int> tempVector;
2701                         _instantPanel->getInstant( tempVector );
2702                         int actualSlice = tempVector[1];
2703                         minZ    = actualSlice;
2704                         maxZ    = actualSlice;
2705                 }
2706
2707                 // Stadistics...
2708                 for ( j=minZ; j<=maxZ ; j++)
2709                 {
2710                         fprintf(pFile,"%d\t" , j );
2711                         for (i=0 ; i<maxX ; i++){
2712                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2713                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2714                         } // for i
2715                         fprintf(pFile,"\n"  );
2716                 } // for j
2717
2718
2719                 // Total of stadistics.....
2720                 if (selection!=0)
2721                 {
2722                         fprintf(pFile,"\n Total:\t"  );
2723                         for (i=0 ; i<maxX ; i++){
2724                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2725                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2726                         } // for i
2727                         fprintf(pFile,"\n"  );
2728                 }
2729
2730                 fclose(pFile);
2731         }
2732 }
2733
2734 //AD: 29-05-09
2735 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2736 {
2737         wxBusyCursor wait;
2738
2739         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2740         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2741
2742         std::vector<manualBaseModel*> lstManConMod;
2743         std::vector<manualBaseModel*> lstManConModTmp;
2744         std::vector<manualBaseModel*> lstManConModExp;
2745         std::vector<double> pLstValue;
2746         std::vector<double> pLstValuePosX;
2747         std::vector<double> pLstValuePosY;
2748         std::vector<double> pLstValuePosZ;
2749
2750         std::vector<int> tempVector;
2751         _instantPanel->getInstant( tempVector );
2752
2753         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2754         int z;
2755         int ii,sizeLstContourThings;
2756
2757
2758         int minZ,maxZ;
2759         double totalZ;
2760         double porcent;
2761         wxString tmpString;
2762         minZ    = 0;// _mbarrange->GetStart();
2763         maxZ    = sizeZ;//_mbarrange->GetEnd();
2764         totalZ  = maxZ-minZ+1;
2765
2766
2767 // For each slice..
2768         for ( z=0 ; z<sizeZ ; z++)
2769         {
2770
2771                 porcent = 100.0* (z-minZ)/totalZ;
2772
2773                 tmpString.Printf(_T("Saving Values"));
2774                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2775                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2776                 //_staticTextInformation->SetLabel(tmpString);
2777
2778
2779                 //Extraction data from contours of each slice
2780                 _contourextractdata->SetZtoBeAnalys( z);
2781
2782                 tempVector[1]=z;
2783                 Instant instant(&tempVector);
2784                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2785                 sizeLstContourThings = lstContourThings.size();
2786
2787                 lstManConMod.clear();
2788                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2789                 {
2790                         ContourThing **contourthing = lstContourThings[ii];
2791                         lstManConMod.push_back( (*contourthing)->getModel() );
2792                 }
2793                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2794
2795
2796 //EED004
2797
2798                 int iContourGroup,sizeContourGroup;
2799                 if (typeContourGroup==3) // contour separete
2800                 {
2801                         sizeContourGroup=lstManConModExp.size();
2802                 } else {  // contour AND OR XOR
2803                         sizeContourGroup=1;
2804                 }
2805
2806                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2807                         lstManConModTmp.clear();
2808                         if (typeContourGroup==3) // contour separete
2809                         {
2810                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2811                         } else {  // contour AND OR XOR
2812                                 lstManConModTmp = lstManConModExp;
2813                         }
2814
2815                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2816
2817                         pLstValue.clear();
2818                         pLstValuePosX.clear();
2819                         pLstValuePosY.clear();
2820                         pLstValuePosZ.clear();
2821                         int numberOfPixels;
2822                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2823                                                                                                                 &pLstValue,
2824                                                                                                                 &pLstValuePosX,
2825                                                                                                                 &pLstValuePosY,
2826                                                                                                                 &pLstValuePosZ);
2827
2828                         std::string temp = directory + "/" + namefile + "-slice";
2829                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2830                         temp = temp + ".txt";
2831
2832                         // LG 14/01/09 : using crea
2833                         wxString filename = crea::std2wx(temp);
2834                         /*filename.Printf(_T("%s"),directory.c_str());
2835                         filename.append(_T("\\"));
2836                         filename.append(_T("%s"),namefile.c_str());
2837                         filename.append(_T("-slice"));
2838                         filename.append(_T("%d"),z);
2839                         filename.append(_T("-cont"));
2840                         filename.append(_T("%d"),iContourGroup);
2841                         filename.append(_T(".txt"));*/
2842                         //                      filename.Printf(temp.c_str());
2843
2844
2845
2846                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2847                         fprintf(pFile,"value \t x \t y \t z\n"  );
2848                         int iLstValue,sizeLstValue=pLstValue.size();
2849                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2850                         {
2851                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2852                         }
2853                         fclose(pFile);
2854                 } // for  iContourGroup
2855         } // for z
2856         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2857         //_staticTextInformation->SetLabel( _T("") );
2858
2859 }
2860
2861 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2862         wxBusyCursor wait;
2863
2864         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2865         if (typeContourGroup==3)
2866         {
2867                 typeContourGroup=1;
2868         }
2869         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2870
2871         std::vector<manualBaseModel*> lstManConMod;
2872         std::vector<manualBaseModel*> lstManConModTmp;
2873         std::vector<manualBaseModel*> lstManConModExp;
2874
2875         std::vector<int> tempVector;
2876         _instantPanel->getInstant( tempVector );
2877
2878     vtkImageData *imagedata = _theViewPanel->getImageData();
2879         int ext[6];
2880         imagedata->GetExtent(ext);
2881         int sizeZimage = ext[5]-ext[4]+1;
2882         int z;
2883         int ii,sizeLstContourThings;
2884
2885         double totalZ;
2886         double porcent;
2887
2888         wxString tmpString;
2889
2890
2891         if (selection==0 ) // actual slice
2892         {
2893                 int actualSlice = tempVector[1];
2894                 minZ    = actualSlice;
2895                 maxZ    = actualSlice;
2896         }
2897
2898         totalZ  = maxZ-minZ;
2899
2900
2901         // cleanning image before range
2902         for (z=0; z<minZ; z++){
2903                 _contourextractdata->ResetImageResult(z);
2904         }
2905         // cleanning image after range
2906         for (z=maxZ+1; z<sizeZimage; z++){
2907                 _contourextractdata->ResetImageResult(z);
2908         }
2909
2910
2911 // For each slice..
2912         for ( z=minZ ; z<=maxZ ; z++)
2913         {
2914
2915                 porcent = 100.0* (z-minZ)/totalZ;
2916                 tmpString.Printf(_T("Saving Values"));
2917                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2918                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2919
2920                 //Extraction data from contours of each slice
2921                 _contourextractdata->SetZtoBeAnalys( z);
2922
2923                 tempVector[1]=z;
2924                 Instant instant(&tempVector);
2925                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2926                 sizeLstContourThings = lstContourThings.size();
2927
2928                 lstManConMod.clear();
2929                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2930                 {
2931                         ContourThing **contourthing = lstContourThings[ii];
2932                         lstManConMod.push_back( (*contourthing)->getModel() );
2933                 }
2934                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2935
2936
2937                 int iContourGroup,sizeContourGroup;
2938                 if (typeContourGroup==3) // contour separete
2939                 {
2940                         sizeContourGroup=lstManConModExp.size();
2941                 } else {  // contour AND OR XOR
2942                         sizeContourGroup=1;
2943                 }
2944
2945                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2946                         lstManConModTmp.clear();
2947                         if (typeContourGroup==3) // contour separete
2948                         {
2949                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2950                         } else {  // contour AND OR XOR
2951                                 lstManConModTmp = lstManConModExp;
2952                         }
2953
2954                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2955                         _contourextractdata->CalculateImageResult(); // with actual Z
2956
2957                 } // for  iContourGroup
2958         } // for z
2959
2960         (*value) = _contourextractdata->GetVtkImageValueResult();
2961         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
2962
2963 }
2964
2965 std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
2966 {
2967         std::string result="";
2968         if ( image->GetScalarType()==VTK_CHAR )
2969         {
2970                 result="CHAR";
2971         } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
2972                 result="UCHAR";
2973         } else if ( image->GetScalarType()==VTK_FLOAT ){
2974                 result="FLOAT";
2975         } else if ( image->GetScalarType()==VTK_DOUBLE ){
2976                 result="DOUBLE";
2977         } else if ( image->GetScalarType()==VTK_INT ){
2978                 result="INT";
2979         } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
2980                 result="UINT";
2981         } else if ( image->GetScalarType()==VTK_SHORT ){
2982                 result="SHORT";
2983         } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
2984                 result="USHORT";
2985         } else if ( image->GetScalarType()==VTK_LONG ){
2986                 result="LONG";
2987         } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
2988                 result="ULONG";
2989         }
2990         return result;
2991 }
2992
2993 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2994 {
2995         std::string stringType;
2996         double spc[3];
2997         kernelManager->GetSpacing(spc,0);   // returns the spacing of the first image
2998         stringType              = GetStringTypeImage(value);
2999         std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
3000
3001         wxString filename = crea::std2wx(temp);
3002
3003 // Image Value
3004
3005         vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
3006 //EED 2017-01-01 Migration VTK7
3007 #if VTK_MAJOR_VERSION <= 5
3008         valueChInfo->SetInput(value);
3009 #else
3010         valueChInfo->SetInputData(value);
3011 #endif
3012         valueChInfo->SetSpacingScale(spc);
3013         valueChInfo->Update();
3014         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3015
3016 //EED 2017-01-01 Migration VTK7
3017 #if VTK_MAJOR_VERSION <= 5
3018         writerValueImage->SetInput( valueChInfo->GetOutput() );
3019 #else
3020         writerValueImage->SetInputData( valueChInfo->GetOutput() );
3021 #endif
3022         writerValueImage->SetFileName( (const char *)filename.mb_str() );
3023         writerValueImage->SetFileDimensionality( 3 );
3024         writerValueImage->SetCompression(false);
3025         writerValueImage->Write( );
3026
3027 // Image Mask
3028         stringType              = GetStringTypeImage(mask);
3029         temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
3030
3031         // LG 14/01/09 : using crea
3032         filename = crea::std2wx(temp);
3033         //      filename.Printf(_T(temp.c_str()));
3034
3035
3036         vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3037 //EED 2017-01-01 Migration VTK7
3038 #if VTK_MAJOR_VERSION <= 5
3039         maskChInfo->SetInput(mask);
3040 #else
3041         maskChInfo->SetInputData(mask);
3042 #endif
3043         maskChInfo->SetSpacingScale(spc);
3044         maskChInfo->Update();
3045         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3046
3047 //EED 2017-01-01 Migration VTK7
3048 #if VTK_MAJOR_VERSION <= 5
3049         writerMaskImage->SetInput( maskChInfo->GetOutput() );
3050 #else
3051         writerMaskImage->SetInputData( maskChInfo->GetOutput() );
3052 #endif
3053
3054         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3055         writerMaskImage->SetFileDimensionality( 3 );
3056         writerMaskImage->SetCompression(false);
3057         writerMaskImage->Write( );
3058
3059         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3060
3061 }
3062
3063
3064
3065 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3066         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3067                 _theViewPanel->setActualVertical( value);
3068         }
3069         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
3070                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3071         }
3072
3073         changeInstant();
3074 }
3075
3076 void wxContourMainFrame::onSnakePressed(){
3077         std::vector<double> vecX;
3078         std::vector<double> vecY;
3079         std::vector<double> vecZ;
3080         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3081
3082         if (vecX.size()!=0){
3083                 std::vector<int> tempVector;
3084                 _instantPanel->getInstant( tempVector );
3085                 int i,size=vecZ.size();
3086                 int actualSlice = tempVector[1];
3087                 for ( i=0 ; i<size ; i++ )
3088                 {
3089                         vecZ[i] = actualSlice;
3090                 } // for
3091
3092                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3093                 wxPanel* panel = new wxPanel(dialog,-1);
3094                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3095          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3096                 dialog->ShowModal();
3097         } // if
3098
3099 }
3100
3101 void wxContourMainFrame::saveFileWithContoursAutomatique()
3102 {
3103 printf("EED wxContourMainFrame::saveFileWithContoursAutomatique \n");
3104         std::string filename = kernelManager->getCurrentFileName();
3105         if(filename.compare("")!=0){
3106                 saveFileWithContours(filename);
3107         }else{
3108                 onSave();
3109         }
3110 }
3111 void wxContourMainFrame::ShowToolsPanel(bool show)
3112 {
3113         _pannew->Show(show);
3114 }
3115
3116
3117
3118 void wxContourMainFrame::SetContourGroup(int contourGroup)
3119 {
3120         _contourGroup = contourGroup;
3121 }
3122
3123
3124 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3125 {
3126
3127         if      (_viewMaskImagePanel==NULL)
3128         {
3129                 _contourextractdata = new ContourExtractData(true);
3130                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3131 //              double range[2];
3132 //              _theViewPanel->getImageData()->GetScalarRange(range);
3133                 //int min = (int)floor (range[0]);
3134                 //int max = (int)ceil (range[1]);
3135
3136 //EED 2017-12-17
3137                 int min = 254;
3138                 int max = 256;
3139
3140                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1,  0);
3141                 _viewMaskImage = new ThresholdImageView();
3142                 _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
3143                 _viewMaskImage->SetminMaxValue( min, max);
3144                 _viewMaskImage->SetBaseColor( 0,0,1 );
3145
3146
3147                 std::vector<int> colorbarposition;
3148                 colorbarposition.push_back( -999 );
3149                 colorbarposition.push_back( -999 );
3150                 _viewMaskImage->SetColorBarPosition( colorbarposition );
3151                 double spc[3];
3152                 _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3153                 _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3154
3155                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3156                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3157                 _viewMaskImage->onThresholdChangeOpacity( 25 );
3158         }
3159         return _viewMaskImagePanel;
3160 }
3161
3162
3163 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3164 {
3165         if      (_viewColorLayerImagePanel==NULL)
3166         {
3167                 double range[2];
3168                 _theViewPanel->getImageData()->GetScalarRange(range);
3169                 int min = (int)floor (range[0]);
3170                 int max = (int)ceil (range[1]);
3171                 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
3172                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
3173         //    std::vector<double> range = bbGetInputlstRangeForColorBar();
3174         //    clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
3175                 std::vector<int> colorbarposition;
3176                 colorbarposition.push_back( 50 );
3177                 colorbarposition.push_back( 105 );
3178                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
3179         //    std::vector<double> base_color;
3180         //    _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
3181         //    std::vector<double> grey_level_boundaries;
3182         //    clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
3183                 std::vector<double> transparence_level_boundaries;
3184                 transparence_level_boundaries.push_back(0);
3185                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
3186                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
3187 //              _viewColorLayerImagePanel->SetFittingMode( 3 );
3188         }
3189         return _viewColorLayerImagePanel;
3190 }
3191
3192 void wxContourMainFrame::SetColorLayerImage(vtkImageData* img)
3193 {
3194         if (_viewColorLayerImagePanel!=NULL)
3195         {
3196                 if (img!=NULL)
3197                 {
3198                         _viewColorLayerImagePanel->SetActive(true);
3199                         _viewColorLayerImagePanel->SetImage( img );
3200 //                      RefreshInterface();
3201                 } // img
3202         } // _viewColorLayerImagePanel
3203 }
3204
3205 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3206 {
3207         if      (_viewThresholdImagePanel==NULL)
3208         {
3209                 double range[2];
3210                 _theViewPanel->getImageData()->GetScalarRange(range);
3211                 int min                                         = (int)floor (range[0]);
3212                 int max                                         = (int)ceil (range[1]);
3213                 int start                                       = (max+min)/2 - (max-min)*0.25;
3214                 int end                                         = (max+min)/2 + (max-min)*0.25;
3215                 _viewThresholdImagePanel        = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
3216                 _viewThresholdImage             = new ThresholdImageView();
3217                 _viewThresholdImage->SetminMaxValue(start,end);
3218 //              _viewThresholdImage->SetminMaxValue(range[0],range[1]);
3219                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3220                 std::vector<int> colorbarposition;
3221                 colorbarposition.push_back( 10 );
3222                 colorbarposition.push_back( 105 );
3223                 _viewThresholdImage->SetColorBarPosition( colorbarposition );
3224                 double spc[3];
3225                 _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3226                 _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3227
3228                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3229                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3230                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3231                 _viewThresholdImage->onThresholdChangeOpacity( 25 );
3232                 RefreshInterface();
3233         }
3234         return _viewThresholdImagePanel;
3235 }
3236
3237 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3238 int wxContourMainFrame::getType ()
3239 {
3240         int tipo = 0;
3241         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3242
3243         if(!currentSelection.empty())
3244         {
3245                 std::string cloneName = currentSelection [0];
3246                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3247                 tipo = manualModel-> GetTypeModel();
3248         }
3249         return tipo;
3250 }
3251
3252 double wxContourMainFrame::getContourSizeInPixels()
3253 {
3254         double contourSize = 0;
3255
3256         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3257         if(!currentSelection.empty())
3258         {
3259                 std::string cloneName = currentSelection [0];
3260
3261                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3262
3263 // EED 2017-05-30
3264 //              contourSize = manualModel->GetPathSize();
3265                 double spc[3];
3266                 spc[0]=1;
3267                 spc[1]=1;
3268                 spc[2]=1;
3269                 contourSize = manualModel->GetPathSize( spc );
3270         }
3271         return contourSize;
3272 }
3273
3274 manualBaseModel * wxContourMainFrame::getContour ()
3275 {
3276         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3277
3278         if(!currentSelection.empty())
3279         {
3280                 std::string cloneName = currentSelection [0];
3281                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3282                 return manualModel;
3283         }
3284         return NULL;
3285 }
3286 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3287 {
3288         std::string labelAscii(label.ToAscii());
3289         int pos = labelAscii.find(" ");
3290
3291         int j;
3292
3293         for (j=0 ; pos != string::npos;j++)
3294         {
3295                 labelAscii.replace( pos, 1, "_" );
3296                 pos= labelAscii.find(" ");
3297         }
3298
3299         manualModel -> SetLabel(labelAscii);
3300 }
3301 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3302 {
3303 // EED 2017-05-30
3304 //      double sizeInPixel      = manualModel ->GetPathSize(  );
3305         double spc[3];
3306         spc[0]=1; // ????
3307         spc[1]=1; // ????
3308         spc[2]=1; // ????
3309         double sizeInPixel      = manualModel ->GetPathSize( spc );
3310
3311         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3312         double realContourSize  = sizeInPixel*onePixelRealSize;
3313         manualModel ->SetRealSize(realContourSize);
3314 }
3315
3316 double wxContourMainFrame::onePixelSize( double value)
3317 {
3318         return _onePixelSize = value;
3319 }
3320
3321 std::string wxContourMainFrame::GetFileLocation()
3322 {
3323         return _fileLocation;
3324 }
3325
3326 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3327 {
3328         _fileLocation = newFileLocation;
3329         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3330
3331 //EED 2019-12-17
3332         kernelManager->setCurrentFileName(_fileLocation);
3333 }
3334 //------------------------------------------------------------------------------------------------------------
3335
3336
3337
3338
3339
3340
3341
3342
3343 void wxContourMainFrame::FlipSelectedContours(int flipDirection)
3344 {
3345         FlipLstOfContours(
3346                             (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
3347                             flipDirection
3348                           );
3349
3350 }
3351
3352 void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
3353 {
3354         FlipLstOfContours(
3355                             (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
3356                             flipDirection
3357                           );
3358 }
3359
3360 void wxContourMainFrame::FlipAllContours(int flipDirection)
3361 {
3362         FlipLstOfContours(
3363                             kernelManager->GetLstNameThings() ,
3364                             flipDirection
3365                           );
3366 }
3367
3368 void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
3369 {
3370         int ext[6];
3371         getImageData()->GetExtent(ext);
3372         int sizeX = ext[1]-ext[0];
3373         int sizeY = ext[3]-ext[2];
3374
3375
3376         int i,sizeLstNameThings;
3377         int ii,sizeLstPoints;
3378
3379         sizeLstNameThings       = lstNameThings.size();
3380         for (i=0 ; i<sizeLstNameThings ; i++)
3381         {
3382                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3383                 if (flipDirection==0)
3384                 {
3385                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3386                 } else {
3387                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3388                 }
3389         }// for i  list of Things
3390
3391         //-- Static Contours
3392
3393         lstNameThings           = kernelManager->GetLstNameThingsStatic();
3394         sizeLstNameThings       = lstNameThings.size();
3395         for (i=0 ; i<sizeLstNameThings ; i++)
3396         {
3397                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3398                 if (flipDirection==0)
3399                 {
3400                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3401                 } else {
3402                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3403                 }
3404         }// for i  list of static things
3405 }
3406
3407 void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
3408 {
3409         saveState();
3410
3411         if (typeContourFlip==0) //
3412         {
3413                 FlipSelectedContours(flipDirection);
3414         }
3415
3416         if (typeContourFlip==1) //
3417         {
3418                 FlipActualSliceContours(flipDirection);
3419         }
3420
3421         if (typeContourFlip==2) //
3422         {
3423                 FlipAllContours(flipDirection);
3424         }
3425         RefreshInterface();
3426 }
3427
3428 void wxContourMainFrame::SetXY(int x, int y)
3429 {
3430         _theViewPanel->SetXY(x,y);
3431 }
3432
3433 wxVtkBaseView* wxContourMainFrame::GetWxVtkBaseView()
3434 {
3435         if (_theViewPanel!=NULL)
3436         {
3437                 return _theViewPanel->getWxVtkBaseView();;
3438         } else {
3439                 return NULL;
3440         }
3441 }
3442
3443
3444