lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16 #include <creaWx.h>
  17
  18 //----------------------------------------------------------------------------------------------------------------
  19 // Class implementation
  20 //----------------------------------------------------------------------------------------------------------------
  21 /** @file wxContourMainFrame.cxx */
  22
  23         //------------------------------------------------------------------------------------------------------------
  24         // Constructors & Destructors
  25         //------------------------------------------------------------------------------------------------------------
  26
  27 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  28 char wxContourMainFrame::COPY = 'C';
  29
  30         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  31                 //: wxPanel(parent, id, title, pos, size, style)
  32                 //: wxWindow(parent, id, pos, size, style)
  33                 : wxPanel(parent, id, pos, size, style)
  34         {
  35                 m_mgr.SetManagedWindow(this);
  36                 _creatingContoursActive         = false;
  37                 _theViewPanel                           = NULL;
  38 //              _modelManager                           = NULL;
  39                 _instantPanel                           = NULL;
  40 //              _buttonsBar                                     = NULL;
  41 //              _gridPanel                                      = NULL;
  42 //              _drawToolsPanel                         = NULL;
  43 //              _operationsToolsPanel           = NULL;
  44                 //_autoFormsPanel                               = NULL;
  45 //              _standardToolsPanel                     = NULL;
  46 //              _editionToolsPanel                      = NULL;
  47 //              _listViewPanel                          = NULL;
  48 //              _sceneManager                           = NULL;
  49                 //_actualInstant                                = NULL;
  50                 _numberOfVariablesStatistics = 6+1;
  51
  52                 _refLineControl                         = NULL;
  53                 _refLineModel                           = NULL;
  54                 _refLineView                            = NULL;
  55                 _imageReslicer                          = NULL;
  56                 _thresholdTable                         = NULL;
  57                 _thresholdMapper                        = NULL;
  58                 _thresholdActor                         = NULL;
  59                 _actorPresent                           = false;
  60
  61                 // set up default notebook style
  62 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  63 //              m_notebook_theme = 0;
  64                 //wxContour_ActionCommandsID a;
  65
  66         }
  67
  68         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  69                 : wxPanel(parent, id, pos, size, style)
  70         {
  71                 m_mgr.SetManagedWindow(this);
  72                 _creatingContoursActive         = false;
  73                 _theViewPanel                           = NULL;
  74
  75                 _instantPanel                           = NULL;
  76                 _refLineControl                         = NULL;
  77                 _refLineModel                           = NULL;
  78                 _refLineView                            = NULL;
  79                 _imageReslicer                          = NULL;
  80                 _thresholdTable                         = NULL;
  81                 _thresholdMapper                        = NULL;
  82                 _thresholdActor                         = NULL;
  83                 _actorPresent                           = false;
  84
  85                 // set up default notebook style
  86                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  87                 m_notebook_theme = 0;
  88                 //wxContour_ActionCommandsID a;
  89                 _numberOfVariablesStatistics = 7;
  90
  91                 _datadir = datadir;
  92
  93
  94                 inredo = 0;
  95                 inundo = 0;
  96
  97                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
  98                 _performingOperation = new PerformingOperation();
  99
 100                 if(images.size() > 0)
 101                 {
 102                         _images = images;
 103                         this->setVectImages(images);
 104                 }
 105
 106 }
 107
 108 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 109 {
 110
 111         #if defined(__GNUC__)
 112                 std::string str_home(getenv("HOME"));
 113         #elif defined(_WIN32)
 114                         std::string str_home(getenv("USERPROFILE"));
 115         #endif
 116                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 117
 118         std::vector<std::string> conceptNameVect;
 119         std::vector<int> conceptSizeVect;
 120
 121         notebook = this->createNotebook();
 122
 123
 124         kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 125
 126
 127         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 128         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 129
 130 //-------------------------------------------------------------
 131         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 132         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 133
 134
 135         double val = _theViewPanel->getCurrentDeep();
 136         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 137         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 138         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 139         //*******************changeInstant();
 140         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 141
 142         this->configurePanels( );
 143
 144 }
 145
 146
 147         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
 148                 if(instance == NULL){
 149                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 150                 }
 151                 return instance;
 152         }
 153
 154         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 155         {
 156                 return kernelManager->getVectImages();
 157         }
 158
 159         wxContourMainFrame* wxContourMainFrame :: getInstance()
 160         {
 161                 return instance;
 162         }
 163
 164         void wxContourMainFrame :: resetInstance()
 165         {
 166                 instance->Destroy();
 167         }
 168
 169         wxContourMainFrame :: ~wxContourMainFrame()
 170         {
 171                 deleteAllContours();
 172                 _pannew->Close();
 173                 interfMainPanel::resetInstance();
 174                 delete kernelManager;
 175                 instance = NULL;
 176                 //_pannew->Destroy();
 177                 //delete _pannew;
 178
 179                 m_mgr.UnInit();
 180                 //delete m_mgr;
 181
 182                 //El problema al cerrar la aplicacion puede estar asociado
 183                 //a que  wxAUINotebook esta en la aplicacion
 184                 //principal (wxContourGUIExample)tambien
 185                 //EED????               delete _theViewPanel;
 186                 //EED????               delete _instantPanel;
 187                 //EED????               delete _buttonsBar;
 188                 //EED????               delete _actualInstant;
 189                 //EED????               delete _sceneManager;
 190         }
 191
 192
 193         //------------------------------------------------------------------------------------------------------------
 194         // Creational and initialization methods using WxAui
 195         //------------------------------------------------------------------------------------------------------------
 196         //
 197         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 198         {
 199                 wxSize client_size = GetClientSize();
 200                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 201                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 202                 return noteBook;
 203         }
 204
 205
 206         //------------------------------------------------------------------------------------------------------------
 207         // Creational and initialization methods
 208         //------------------------------------------------------------------------------------------------------------
 209         bool wxContourMainFrame :: configurePanels( )
 210         {
 211                 bool configured = _theViewPanel!=NULL;
 212
 213                 configured &= _theViewPanel!=NULL;
 214                 if( _theViewPanel!=NULL )
 215                 {
 216                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 217                         m_mgr.Update();
 218                 }
 219
 220
 221                 if( configured )
 222                 {
 223                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 224                         m_mgr.Update();
 225                 }
 226
 227                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 228                 m_mgr.Update();
 229
 230                 SetMinSize(wxSize(300,300));
 231                 m_mgr.Update();
 232                 return configured;
 233         }
 234
 235
 236         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 237                 {
 238                 bool configured = panel!=NULL;
 239                 configured &= panel!=NULL;
 240
 241                 if( configured )
 242                 {
 243                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 244                         m_mgr.Update();
 245                 }
 246                 return configured;
 247         }
 248
 249         //------------------------------------------------------------------------------------------------------------
 250         //  Attributes getters and setters
 251         //------------------------------------------------------------------------------------------------------------
 252
 253
 254
 255         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 256         {
 257                 _instantPanel = theInstantChooserPanel;
 258         }
 259
 260 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 261 //      {
 262 //              _buttonsBar = theButtonsBar;
 263 //      }
 264
 265 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 266 //      {
 267 //              _gridPanel = theGridPanel;
 268 //      }
 269
 270 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 271 //      {
 272 //              _drawToolsPanel = theDrawToolsPanel;
 273 //      }
 274
 275 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 276 //      {
 277 //              _operationsToolsPanel = theOperationsToolsPanel;
 278 //      }
 279
 280 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 281 //      {
 282 //              _autoFormsPanel = theAutoFormsPanel;
 283 //      }
 284
 285 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 286 //      {
 287 //              _standardToolsPanel= theStandardToolsPanel;
 288 //      }
 289
 290 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 291 //      {
 292 //              _editionToolsPanel =  theEditionToolsPanel;
 293 //      }
 294
 295 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 296 //      {
 297 //              _listViewPanel = theListViewPanel;
 298 //      }
 299
 300
 301
 302 void wxContourMainFrame::onCreateContourSpline( ){
 303
 304         //JCP 20-10-08 Undo redo implementation
 305         saveState();
 306         //JCP 20-10-08 Undo redo implementation
 307         createContour( 1 );
 308
 309 }
 310 void wxContourMainFrame::onCreateContourRectangle( ){
 311     //JCP 20-10-08 Undo redo implementation
 312         saveState();
 313         //JCP 20-10-08 Undo redo implementation
 314         createContour( 2 );
 315 }
 316 void wxContourMainFrame::onCreateContourCircle( ){
 317     //JCP 20-10-08 Undo redo implementation
 318         saveState();
 319         //JCP 20-10-08 Undo redo implementation
 320         createContour( 3 );
 321 }
 322
 323 void wxContourMainFrame::onCreateContourLine( ){
 324     //JCP 20-10-08 Undo redo implementation
 325         saveState();
 326         //JCP 20-10-08 Undo redo implementation
 327         createContour( 6 );
 328 }
 329
 330 //------------------------------------------------------------------------------------------------------------
 331
 332 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 333 {
 334         //Creating the manualContourModel and including in the model
 335         manualContourModel * manModelContour = factoryManualContourModel(panel );
 336
 337         std::vector<int> instantVector;
 338         _instantPanel->getInstant( instantVector );
 339         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 340
 341         /*std::vector<int> instantVector;
 342         _instantPanel->getInstant( instantVector );
 343         std::string theName;
 344         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 345         bool addedModel = theName.compare("") != 0;//??
 346
 347         if( addedModel )
 348         {
 349                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 350                 _theViewPanel->getSpacing(spc);
 351                 //Adding the manualContourControler to interface objects structure
 352                 //Adding the manualViewContour to interface objects structure
 353                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 354                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 355         }
 356 }
 357 void wxContourMainFrame :: createContour( int typeContour )
 358 {
 359         //Creating the manualContourModel and including in the model
 360         manualContourModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 361
 362
 363         std::vector<int> instantVector;
 364         _instantPanel->getInstant( instantVector );
 365         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 366
 367         /*std::vector<int> instantVector;
 368         _instantPanel->getInstant( instantVector );
 369         std::string theName;
 370         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 371         bool addedModel = theName.compare("") != 0;//??
 372         if( addedModel )
 373         {
 374                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 375                 _theViewPanel->getSpacing(spc);
 376                 //Adding the manualContourControler to interface objects structure
 377                 //Adding the manualViewContour to interface objects structure
 378                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 379                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 380         }
 381
 382 }
 383 manualContourModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 384
 385         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 386         manualContourModel *manModelContour=NULL;
 387         manModelContour = manModelContourBullEye;
 388         if (panel!=NULL){
 389                 int iCrown,sizeCrowns,iSector,sizeSectors;
 390                 double radioA,radioB,ang,angDelta ;
 391                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 392                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 393                 {
 394                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 395                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 396                         if (iCrown==sizeCrowns-1)
 397                         {
 398                                 radioA  = 0;
 399                         } else {
 400                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 401                         }
 402                         radioA=radioA/100.0;
 403                         radioB=radioB/100.0;
 404                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 405                         {
 406                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 407                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 408                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 409                         } // for iSector
 410                 } // for iCrown
 411         } // if _panelBullEyeOptions
 412
 413         return manModelContour;
 414 }
 415 void wxContourMainFrame :: saveState(){
 416
 417         std::string temp = kernelManager->saveState();
 418         saveFileWithContours(temp);
 419 }
 420
 421 void wxContourMainFrame::onDeleteContour(){
 422         //JCP 20-10-08 Undo redo implementation
 423                 saveState();
 424                 //JCP 20-10-08 Undo redo implementation
 425
 426                 std::vector<std::string> lstKeyNameToBeErase;
 427                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 428                 deleteContours( lstKeyNameToBeErase );
 429 /*JCP 19 - 11 - 08
 430                 int i,size=_sceneManager->getSelectedObjects().size();
 431                 for(i=0;i<size;i++)
 432                 {
 433                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 434                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 435                         if ( ispartofstaticlist>=0 )
 436                         {
 437                                 std::vector<int> tempVector;
 438                                 _instantPanel->getInstant( tempVector );
 439                                 Instant instant(&tempVector);
 440                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 441                         }
 442                 }
 443
 444                 std::vector<std::string> lstKeyName;
 445                 std::vector<std::string> lstKeyNameActualSlice;
 446                 std::vector<std::string> lstKeyNameToBeErase;
 447
 448                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 449                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 450                 int k,kSize=lstKeyNameToBeErase.size();
 451                 int j,jSize=lstKeyNameActualSlice.size();
 452                 bool ok;
 453                 for (k=0;k<kSize; k++)
 454                 {
 455                         ok=false;
 456                         for (j=0;j<jSize; j++)
 457                         {
 458                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 459                                 {
 460                                         ok=true;
 461                                 }
 462                         } // for j
 463                         if (ok==true)
 464                         {
 465                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 466                         } // if ok
 467                 } // for k
 468
 469                 deleteContours( lstKeyName );
 470 JCP 19 - 11 - 08*/
 471 }
 472
 473 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 474 {
 475         int i,size=keyNamesVector.size();
 476         for (i=0;i<size;i++)
 477         {
 478                 deleteContour( keyNamesVector[i] );
 479         }
 480 }
 481
 482 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 483         /*
 484         manualContourModel                      * cModel;
 485         manualViewBaseContour           * cViewer;
 486         manualContourBaseControler      * cControler;
 487
 488         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 489         cControler      = conwrapviewControl->getControler();*/
 490
 491         //JCP 21 - 11 - 2008
 492         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 493         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 494
 495         if (isedit  && ispartofstaticlst)
 496         {
 497                 _theViewPanel->removeFromScene(theKeyName);
 498
 499                 kernelManager->deleteCModel(theKeyName);
 500                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 501                 //cViewer               = conwrapviewControl->getViewer();
 502                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 503                 //cControler* conwrapviewControl->getControler();
 504 //EED Borrame
 505 //FILE *ff = fopen("c:/temp/wxVtkBaseView_SceneManagerStadistics.txt","a+");
 506 //fprintf(ff,"EED wxContourEventHandler::deleteContours() \n" );
 507 //fprintf(ff,"    %s %p\n",keyNamesVector[i].c_str(),  cControler );
 508 //fclose(ff);
 509         //      delete cModel;
 510         //      delete cViewer;
 511         //      delete cControler;
 512         } // if editable
 513 //JCP 21 - 11 - 08
 514 }
 515
 516 void wxContourMainFrame::onDeleteContoursActSlice(){
 517         //JCP 20-10-08 Undo redo implementation
 518         saveState();
 519         //JCP 20-10-08 Undo redo implementation
 520         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 521 }
 522 void wxContourMainFrame::onDeleteAllContours(){
 523         //JCP 20-10-08 Undo redo implementation
 524         saveState();
 525         deleteAllContours();
 526 }
 527 void wxContourMainFrame::deleteAllContours(){
 528         //JCP 20-10-08 Undo redo implementation
 529
 530         wxBusyCursor wait;
 531         std::vector<int> tempVector;
 532         _instantPanel->getInstant( tempVector );
 533
 534 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 535 //              the values in GetStart and GetEnd will then not be initialize also.
 536 //              We use instead the values given when initializing the _deletepanel.
 537
 538         //int minZ = _mbarrangeDeleteAll->GetStart();
 539         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 540         int minZ, maxZ;
 541
 542         minZ = 0;
 543         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 544
 545 //JCP --08-09-2008
 546
 547         _theViewPanel->getSceneManager()->removeSceneContours( );
 548         _theViewPanel->getSceneManager()->removeAllOutlines();
 549         kernelManager->removeAllOutlines();
 550 //JCP --08-09-2008
 551         /*
 552         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 553         {
 554                 _theViewPanel->getSceneManager()->removeSceneContours( );
 555                 _modelManager->removeAllOutlines();
 556                 _theViewPanel->getSceneManager()->removeAllOutlines();
 557
 558         } else {
 559                 for ( z=minZ ; z<=maxZ ; z++)
 560                 {
 561                         tempVector[1]=z;
 562                         Instant instant(&tempVector);
 563                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 564
 565                         sizeLstContourThings = lstContourThings.size();
 566                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 567                         {
 568                                 ContourThing **contourthing = lstContourThings[ii];
 569                                 deleteContour( (*contourthing)->getName() );
 570                         } //for ii
 571                 }// for z
 572         } // if
 573 JCP --08-09-2008 */
 574 }
 575
 576 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 577         _instantPanel->setConceptValue(name, value);
 578 }
 579
 580 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 581         return _instantPanel->getLastConceptData();
 582 }
 583 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 584         return _instantPanel->getIfConceptCheckedAt( name, pos );
 585 }
 586
 587 void wxContourMainFrame::changeInstant()
 588 {
 589                 std::vector<int> instantVect;
 590                 _instantPanel->getInstant( instantVect );
 591 //              Instant * theInstant = new Instant ( &instantVect );
 592
 593                 //Setting the actual instant
 594                 //_actualInstant = theInstant;
 595
 596                 kernelManager->setInstant(instantVect);
 597                 //_modelManager->setInstant( _actualInstant );
 598
 599             onThresholdChange();
 600                 updateInstantOutlines();
 601                 updateInstantImageData();
 602                 updateInstantAxes();
 603 }
 604
 605
 606 void wxContourMainFrame :: updateInstantOutlines()
 607 {
 608         _theViewPanel->removeSceneContours();
 609         _theViewPanel->addNameWrapperToScene();
 610
 611         //for( int i=0; i<size; i++)
 612         //{
 613         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 614         //}
 615 }
 616
 617 int wxContourMainFrame::getNamesWrappingSize(){
 618         return kernelManager->getNamesWrappingSize();
 619 }
 620 std::string wxContourMainFrame::getNameWrapping(int i){
 621         return kernelManager->getNameWrapping(i);
 622 }
 623
 624 void wxContourMainFrame::updateInstantImageData()
 625 {
 626         std::vector<int> inst;
 627         _instantPanel->getInstant(inst);
 628
 629         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 630         if(img!=NULL){
 631                 _theViewPanel->changeImage(img);
 632                 showAxis(false);
 633         }else{
 634                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 635                 _theViewPanel->setImageSlice(z);
 636         }
 637 }
 638
 639 void wxContourMainFrame::updateInstantAxes()
 640 {
 641 }
 642
 643
 644 void wxContourMainFrame::onChangeDeep(int val){
 645         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 646         changeInstant();
 647 }
 648
 649
 650 void wxContourMainFrame::onCopy(){
 651         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 652
 653         std::vector<int> tempVector;
 654         _instantPanel->getInstant( tempVector );
 655     _performingOperation->reset();
 656         _performingOperation->setStartCommand( COPY );
 657         _performingOperation->setStartOperationInstantVector( tempVector );
 658         _performingOperation->setKeyNamesOperationElems( currentSelection );
 659 }
 660
 661 void wxContourMainFrame::onPaste(){
 662
 663
 664         char theStartCommand = _performingOperation->getStartCommand();
 665         if (  theStartCommand == COPY )
 666         {
 667                 //JCP 20-10-08 Undo redo implementation
 668                 saveState();
 669                 //JCP 20-10-08 Undo redo implementation
 670                 std::vector<int> tempVector;
 671                 _instantPanel->getInstant( tempVector );
 672                 _performingOperation->setEndOperationInstantVector ( tempVector );
 673                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 674                 int i,size = elems.size();
 675                 for( i=0; i<size; i++ )
 676                 {
 677                         createCopyContourOf( elems[i], tempVector, i>0 );
 678                 }
 679         }
 680 }
 681 void wxContourMainFrame::onUndo(){
 682         std::string filename;
 683         if(kernelManager->onUndoSaveFile(filename)){
 684                 saveFileWithContours(filename);
 685         }
 686         if(kernelManager->onUndo(filename)){
 687                 loadState(filename);
 688         }
 689 }
 690 void wxContourMainFrame::onRedo(){
 691         std::string filename;
 692         if(kernelManager->onRedo(filename)){
 693                 loadState(filename);
 694         }
 695
 696 }
 697 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 698 {
 699         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 700         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 701         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 702 }
 703
 704 ///AD: 03-09    Copy the object and apply the given transformation
 705 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 706 {
 707         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 708         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 709
 710         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 711         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 712
 713         double pnt1X = refPoint1->GetX();
 714         double pnt1Y = refPoint1->GetY();
 715 //      double pnt1Z = refPoint1->GetZ();
 716         double pnt2X = refPoint2->GetX();
 717         double pnt2Y = refPoint2->GetY();
 718 //      double pnt2Z = refPoint2->GetZ();
 719
 720         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 721         vtkTransform *t = vtkTransform::New();
 722
 723         t->PostMultiply();
 724         t->Identity();
 725         t->Translate(-pnt1X, -pnt1Y, 0);
 726         t->RotateZ(-angle);
 727         t->Scale(-1,1,1);
 728         t->RotateZ(angle);
 729         t->Translate(pnt1X, pnt1Y, 0);
 730         t->Update();
 731
 732         int i,size=manualModel->GetSizeLstPoints();
 733         for (i=0;i<size;i++)
 734         {
 735                 manualPoint * mp = manualModel->GetManualPoint(i);
 736                 float vecIn[3];
 737                 float vecOut[3];
 738                 vecIn[0]=mp->GetX();
 739                 vecIn[1]=mp->GetY();
 740                 vecIn[2]=mp->GetZ();
 741                 t->TransformPoint( vecIn, vecOut );
 742                 mp->SetPointX( vecOut[0] );
 743                 mp->SetPointY( vecOut[1] );
 744                 mp->SetPointZ( vecOut[2] );
 745         }
 746
 747         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 748 }
 749
 750 void wxContourMainFrame ::loadState(std::string filename){
 751         char tmp[255];
 752         FILE *pFile=fopen(filename.c_str(),"r+");
 753
 754         fscanf(pFile,"%s",tmp); // --CreaContour--
 755
 756         fscanf(pFile,"%s",tmp); // Version
 757         fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 758         std::string version(tmp);
 759
 760         deleteAllContours();
 761
 762         //AD:02-06-09
 763         if (version=="1.0.2")
 764         {
 765                 loadContours(pFile);
 766         }
 767
 768         //AD:02-06-09
 769         else if (version=="1.0.1")
 770         {
 771                 loadContours(pFile);
 772         }
 773
 774         //AD:02-06-09
 775         else if (version=="1.0.0")
 776         {
 777                 loadContours(pFile);
 778         }
 779
 780         fclose(pFile);
 781 }
 782
 783 void wxContourMainFrame ::loadContours( FILE *pFile )
 784 {
 785         char tmp[255];
 786         fscanf(pFile,"%s",tmp); // NumberOfContours
 787         fscanf(pFile,"%s",tmp); // ##
 788         int numberOfContours = atoi(tmp);
 789
 790         std::vector<int> instantVector;
 791         int typeContourModel;
 792         manualContourModel *manModelContour;
 793         int typeView;
 794
 795         fscanf(pFile,"%s",tmp); // ImageDimensions
 796         fscanf(pFile,"%s",tmp); // X
 797         fscanf(pFile,"%s",tmp); // Y
 798         fscanf(pFile,"%s",tmp); // Z
 799
 800         fscanf(pFile,"%s",tmp); // ImageSpacing
 801         fscanf(pFile,"%s",tmp); // X
 802         fscanf(pFile,"%s",tmp); // Y
 803         fscanf(pFile,"%s",tmp); // Z
 804
 805         int i;
 806         for (i=0;i<numberOfContours;i++)
 807         {
 808                 instantVector.clear();
 809                 fscanf(pFile,"%s",tmp); // Instant
 810                 fscanf(pFile,"%s",tmp); // 1
 811                 instantVector.push_back( atoi(tmp) );
 812                 fscanf(pFile,"%s",tmp); // 2
 813                 instantVector.push_back( atoi(tmp) );
 814                 fscanf(pFile,"%s",tmp); // 3
 815                 instantVector.push_back( atoi(tmp) );
 816                 fscanf(pFile,"%s",tmp); // 4
 817                 instantVector.push_back( atoi(tmp) );
 818                 fscanf(pFile,"%s",tmp); // 5
 819                 instantVector.push_back( atoi(tmp) );
 820                 fscanf(pFile,"%s",tmp); // 6
 821                 instantVector.push_back( atoi(tmp) );
 822
 823                 fscanf(pFile,"%s",tmp); // TypeContourModel
 824                 fscanf(pFile,"%s",tmp); // ##
 825                 typeContourModel = atoi(tmp);
 826
 827                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 828                 manModelContour->Open(pFile);
 829
 830                 fscanf(pFile,"%s",tmp); // TypeView
 831                 fscanf(pFile,"%s",tmp); // ##
 832                 typeView = atoi(tmp);
 833
 834                 std::string theName;
 835                 theName = kernelManager->createOutline( manModelContour, instantVector );
 836                 bool addedModel = theName.compare("") != 0;
 837                 if( addedModel )
 838                 {
 839                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 840                         _theViewPanel->getSpacing(spc);
 841                         //Adding the manualContourControler to interface objects structure
 842                         //Adding the manualViewContour to interface objects structure
 843                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 844                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 845                 }
 846         }// for  numberOfContours
 847 }
 848
 849 void wxContourMainFrame::onLoad()
 850 {
 851         char tmp[255];
 852         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 853         if (dialog.ShowModal() == wxID_OK)
 854         {
 855                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 856                 FILE *pFile=fopen(fileNameContourROI.c_str(),"r+");
 857
 858                 fscanf(pFile,"%s",tmp); // --CreaContour--
 859
 860                 fscanf(pFile,"%s",tmp); // Version
 861                 fscanf(pFile,"%s",tmp); // 1.0.2 || 1.0.1 || 1.0.0
 862                 std::string version(tmp);
 863
 864                 //AD:02-06-09
 865                 if (version=="1.0.2")
 866                 {
 867                         openContours(pFile,2);
 868                 }
 869
 870                 //AD:02-06-09
 871                 else if (version=="1.0.1")
 872                 {
 873                         openContours(pFile,1);
 874                 }
 875
 876                 //AD:02-06-09
 877                 else if (version=="1.0.0")
 878                 {
 879                         openContours(pFile,0);
 880                 }
 881
 882                 fclose(pFile);
 883         }
 884         _theViewPanel->getSceneManager()->removeSceneContours();
 885         changeInstant();
 886 }
 887
 888 //AD: 29-05-09
 889 void wxContourMainFrame::onSave(){
 890         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
 891         if (dialog.ShowModal() == wxID_OK)
 892         {
 893                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 894                 kernelManager->setCurrentFileName(fileNameContourROI);
 895                 saveFileWithContours( fileNameContourROI );
 896         }
 897 }
 898
 899 //AD: 29-05-09
 900 void wxContourMainFrame::saveFileWithContours( std::string filename )
 901 {
 902
 903         FILE *pFile=fopen(filename.c_str(),"w+");
 904         std::vector< std::string > lstNameThings;
 905         int i,sizeLstNameThings;
 906
 907         fprintf(pFile,"--CreaContour--\n");
 908         fprintf(pFile,"Version %s\n", "1.0.2" );
 909
 910         // Normal Contours
 911         lstNameThings           = kernelManager->GetLstNameThings();
 912         sizeLstNameThings       = lstNameThings.size();
 913         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
 914
 915         vtkImageData *image = _images[0];
 916
 917         int dimRange[3];
 918         image->GetDimensions(dimRange);
 919
 920         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
 921
 922         double spaRange[3];
 923         image->GetSpacing(spaRange);
 924
 925         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
 926
 927         for (i=0 ; i<sizeLstNameThings ; i++)
 928         {
 929                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 930                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 931         }// for i
 932
 933         //-- Contours Statics
 934         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 935         sizeLstNameThings       = lstNameThings.size();
 936         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
 937         for (i=0 ; i<sizeLstNameThings ; i++)
 938         {
 939                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 940                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 941         }// for i
 942         fclose(pFile);
 943 }
 944
 945 //AD:04-06-09
 946 void wxContourMainFrame::openContours( FILE *pFile, int version )
 947 {
 948         char tmp[255];
 949         fscanf(pFile,"%s",tmp); // NumberOfContours
 950         fscanf(pFile,"%s",tmp); // ##
 951         int numberOfContours = atoi(tmp);
 952
 953         std::vector<int> instantVector;
 954         int typeContourModel;
 955         manualContourModel *manModelContour;
 956         int typeView;
 957
 958         vtkImageData *image = _images[0];
 959         int imageDim[3];
 960         double imageSpac[3];
 961         int tempDim[3];
 962         double tempSpac[3];
 963
 964         bool compatible = true;
 965
 966         //Version==2
 967         if (version==2)
 968         {
 969                 image->GetDimensions(imageDim);
 970                 image->GetSpacing(imageSpac);
 971
 972                 fscanf(pFile,"%s",tmp); // ImageDimensions
 973                 fscanf(pFile,"%s",tmp); // X
 974                 tempDim[0] = atoi(tmp);
 975                 fscanf(pFile,"%s",tmp); // Y
 976                 tempDim[1] = atoi(tmp);
 977                 fscanf(pFile,"%s",tmp); // Z
 978                 tempDim[2] = atoi(tmp);
 979
 980                 fscanf(pFile,"%s",tmp); // ImageSpacing
 981                 fscanf(pFile,"%s",tmp); // X
 982                 tempSpac[0] = atof(tmp);
 983                 fscanf(pFile,"%s",tmp); // Y
 984                 tempSpac[1] = atof(tmp);
 985                 fscanf(pFile,"%s",tmp); // Z
 986                 tempSpac[2] = atof(tmp);
 987
 988                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 3
 989                 if (imageDim[0]!=tempDim[0] || imageDim[1]!=tempDim[1] || imageSpac[0]!=tempSpac[0] || imageSpac[1]!=tempSpac[1])
 990                 {
 991                         compatible = false;
 992                 }
 993         }
 994
 995         if (compatible==true)
 996         {
 997                 int i;
 998                 for (i=0;i<numberOfContours;i++)
 999                 {
1000                         instantVector.clear();
1001                         fscanf(pFile,"%s",tmp); // Instant
1002
1003                         fscanf(pFile,"%s",tmp); // 1
1004                         instantVector.push_back( atoi(tmp) );
1005                         fscanf(pFile,"%s",tmp); // 2
1006                         instantVector.push_back( atoi(tmp) );
1007                         fscanf(pFile,"%s",tmp); // 3
1008                         instantVector.push_back( atoi(tmp) );
1009                         fscanf(pFile,"%s",tmp); // 4
1010                         instantVector.push_back( atoi(tmp) );
1011                         fscanf(pFile,"%s",tmp); // 5
1012                         instantVector.push_back( atoi(tmp) );
1013                         fscanf(pFile,"%s",tmp); // 6
1014                         instantVector.push_back( atoi(tmp) );
1015
1016
1017                         fscanf(pFile,"%s",tmp); // TypeContourModel
1018                         fscanf(pFile,"%s",tmp); // ##
1019                         typeContourModel = atoi(tmp);
1020
1021                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1022                         manModelContour->Open(pFile);
1023
1024                         fscanf(pFile,"%s",tmp); // TypeView
1025                         fscanf(pFile,"%s",tmp); // ##
1026                         typeView = atoi(tmp);
1027
1028                         std::string theName;
1029                         theName = kernelManager->createOutline( manModelContour, instantVector );
1030                         bool addedModel = theName.compare("") != 0;
1031                         if( addedModel )
1032                         {
1033                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1034                                 _theViewPanel->getSpacing(spc);
1035                                 //Adding the manualContourControler to interface objects structure
1036                                 //Adding the manualViewContour to interface objects structure
1037                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1038                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1039                         }
1040
1041                         if (version==0) //StaticContours (will appear in all slices)
1042                         {
1043                                 Instant instant(&instantVector);
1044                                 kernelManager->changeContourOfManager( theName , &instant );
1045                         }
1046
1047                 }// for  numberOfContours
1048         }
1049
1050         else if (compatible==false)
1051         {
1052                 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(260,160));
1053                 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1054                 wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1055
1056                 wxString lstOptOperation[2];
1057                 lstOptOperation[0]=_T("By Dimension");
1058                 lstOptOperation[1]=_T("By Spacing");
1059                 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1060
1061                 dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1062                 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1063                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1064                 dialSizer->Add(radioOpts,0,wxGROW);
1065                 dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1066                 dialSizer->Add(buttonsSizer,0,wxGROW);
1067                 dial->SetSizer(dialSizer, true);
1068                 dial->Layout();
1069                 dial->ShowModal();
1070
1071                 int typeOfTransformation = -1;
1072                 bool transform = false;
1073
1074                 if (dial->GetReturnCode() == wxID_OK)
1075                 {
1076                         typeOfTransformation = radioOpts->GetSelection();
1077                         transform = true;
1078                 }
1079
1080                 int i;
1081                 for (i=0;i<numberOfContours;i++)
1082                 {
1083                         instantVector.clear();
1084                         fscanf(pFile,"%s",tmp); // Instant
1085
1086                         fscanf(pFile,"%s",tmp); // 1
1087                         instantVector.push_back( atoi(tmp) );
1088                         fscanf(pFile,"%s",tmp); // 2
1089                         instantVector.push_back( atoi(tmp) );
1090                         fscanf(pFile,"%s",tmp); // 3
1091                         instantVector.push_back( atoi(tmp) );
1092                         fscanf(pFile,"%s",tmp); // 4
1093                         instantVector.push_back( atoi(tmp) );
1094                         fscanf(pFile,"%s",tmp); // 5
1095                         instantVector.push_back( atoi(tmp) );
1096                         fscanf(pFile,"%s",tmp); // 6
1097                         instantVector.push_back( atoi(tmp) );
1098
1099                         fscanf(pFile,"%s",tmp); // TypeContourModel
1100                         fscanf(pFile,"%s",tmp); // ##
1101                         typeContourModel = atoi(tmp);
1102
1103                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1104                         manModelContour->Open(pFile);
1105
1106                         if (transform==true)
1107                         {
1108                                 if (typeOfTransformation==0)
1109                                 {
1110                                         double transX, transY;
1111                                         transX = (double) imageDim[0]/tempDim[0];
1112                                         transY = (double) imageDim[1]/tempDim[1];
1113                                         manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1114                                 }
1115                                 else if (typeOfTransformation==1)
1116                                 {
1117                                         double transX, transY;
1118                                         transX = (double) tempSpac[0]/imageSpac[0];
1119                                         transY = (double) tempSpac[1]/imageSpac[1];
1120                                         manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1121                                 }
1122                         }
1123
1124                         fscanf(pFile,"%s",tmp); // TypeView
1125                         fscanf(pFile,"%s",tmp); // ##
1126                         typeView = atoi(tmp);
1127
1128                         std::string theName;
1129                         theName = kernelManager->createOutline( manModelContour, instantVector );
1130                         bool addedModel = theName.compare("") != 0;
1131                         if( addedModel )
1132                         {
1133                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1134                                 _theViewPanel->getSpacing(spc);
1135                                 //Adding the manualContourControler to interface objects structure
1136                                 //Adding the manualViewContour to interface objects structure
1137                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1138                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1139                         }
1140
1141                         if (version==0) //StaticContours (will appear in all slices)
1142                         {
1143                                 Instant instant(&instantVector);
1144                                 kernelManager->changeContourOfManager( theName , &instant );
1145                         }
1146                 }// for  numberOfContours
1147         }
1148 }
1149
1150 void wxContourMainFrame::RefreshInterface(){
1151         changeInstant();
1152         _theViewPanel->RefreshInterface();
1153         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1154         //wxvtk2dbaseview->Refresh();
1155 }
1156
1157 vtkImageData* wxContourMainFrame::getImageData(){
1158         return _theViewPanel->getImageData();
1159 }
1160
1161 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1162 {
1163         //JCP 20-10-08 Undo redo implementation
1164         saveState();
1165         //JCP 20-10-08 Undo redo implementation
1166
1167         wxBusyCursor wait;
1168         int                                     x                                       = _theViewPanel->GetX();
1169         int                                     y                                       = _theViewPanel->GetY();
1170         int                                     z                                       = _theViewPanel->GetZ();
1171         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1172         RefreshInterface();
1173 }
1174
1175 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1176 {
1177         int typeofcontour = 1;
1178         //Image Data
1179         vtkImageData    *imagedata      = getImageData();
1180
1181         //Tipo de pixeles a utilizar internamente en ITK
1182         typedef   float  InternalPixelType;
1183         const     unsigned int    Dimension = 2;
1184         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1185
1186         //Tipo de pixeles de salida 1
1187         typedef unsigned char OutputPixelType;
1188         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1189
1190         //Tipo de pixeles de salida 2
1191         typedef unsigned short OutputPixelType2;
1192         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1193
1194         //DefiniciÛn del thresholder
1195         typedef itk::BinaryThresholdImageFilter<
1196                                                         InternalImageType,
1197                                                         OutputImageType    >    ThresholdingFilterType;
1198
1199         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1200         typedef itk::CastImageFilter<
1201                                 OutputImageType, OutputImageType2 >  CastFilterType;
1202
1203         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1204         typedef itk::CastImageFilter<
1205                                 OutputImageType2, InternalImageType >  CastFilterType2;
1206
1207         //Tercer tipo de conversiÛn
1208         typedef itk::RescaleIntensityImageFilter<
1209                                                                 InternalImageType,
1210                                                                 OutputImageType >   CastFilterType3;
1211
1212         //Cuarto tipo de conversiÛn
1213         typedef itk::RescaleIntensityImageFilter<
1214                                                                 OutputImageType,
1215                                                                 OutputImageType >   CastFilterType4;
1216
1217         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1218
1219         thresholder->SetLowerThreshold( 0.0 );
1220         thresholder->SetUpperThreshold( 128 );
1221
1222         thresholder->SetOutsideValue(  255  );
1223         thresholder->SetInsideValue(  0 );
1224
1225         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1226         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1227         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1228         typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1229
1230         ConnectorType::Pointer connector= ConnectorType::New();
1231         ConnectorType2::Pointer connector2= ConnectorType2::New();
1232
1233
1234         CastFilterType::Pointer filter=CastFilterType::New();
1235         CastFilterType2::Pointer filter2=CastFilterType2::New();
1236
1237         connector->SetInput( imagedata );
1238         filter2->SetInput(connector->GetOutput());
1239
1240         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1241                                                                 InternalImageType,
1242                                                                 InternalImageType >  SmoothingFilterType;
1243
1244         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1245
1246         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1247                                                                 InternalImageType,
1248                                                                 InternalImageType >  GradientFilterType;
1249
1250         typedef   itk::SigmoidImageFilter<
1251                                                                 InternalImageType,
1252                                                                 InternalImageType >  SigmoidFilterType;
1253
1254         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1255
1256         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1257
1258         sigmoid->SetOutputMinimum(  0.0  );
1259         sigmoid->SetOutputMaximum(  255.0  );
1260
1261
1262         typedef  itk::FastMarchingImageFilter<
1263                                                                 InternalImageType,
1264                                                                 InternalImageType >    FastMarchingFilterType;
1265
1266
1267         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1268
1269         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1270                                         InternalImageType >    GeodesicActiveContourFilterType;
1271         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1272                                                                                 GeodesicActiveContourFilterType::New();
1273
1274         typedef  itk::ZeroCrossingImageFilter<
1275                                                                 InternalImageType,
1276                                                                 InternalImageType >    ZeroCrossingFilterType;
1277         ZeroCrossingFilterType::Pointer zeroCrossing =
1278                                                         ZeroCrossingFilterType::New();
1279
1280         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1281
1282         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1283         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1284         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1285
1286         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1287         int it=atoi(  crea::wx2std(iter).c_str() );
1288         geodesicActiveContour->SetNumberOfIterations( it );
1289
1290         smoothing->SetInput( filter2->GetOutput() );
1291         gradientMagnitude->SetInput( smoothing->GetOutput() );
1292         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1293         fastMarching->SetInput( sigmoid->GetOutput() );
1294         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1295         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1296
1297         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1298         //thresholder->SetInput( zeroCrossing->GetOutput() );
1299         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1300         connector2->SetInput( thresholder->GetOutput()  );
1301
1302
1303         smoothing->SetTimeStep( 0.125 );
1304         smoothing->SetNumberOfIterations(  5 );
1305         smoothing->SetConductanceParameter( 9.0 );
1306
1307
1308         const double sigma = atof(  crea::wx2std(sigm).c_str() );
1309         gradientMagnitude->SetSigma(  sigma  );
1310
1311         const double alpha =  atof(  crea::wx2std(alf).c_str() );
1312         const double beta  =  atof(  crea::wx2std(bet).c_str() );
1313
1314         sigmoid->SetAlpha( alpha );
1315         sigmoid->SetBeta(  beta  );
1316
1317         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1318         typedef FastMarchingFilterType::NodeType       NodeType;
1319
1320         NodeContainer::Pointer seeds = NodeContainer::New();
1321
1322         InternalImageType::IndexType  seedPosition;
1323         seedPosition[0] = x;
1324         seedPosition[1] = y;
1325
1326         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1327
1328         NodeType node;
1329
1330         const double seedValue = - initialDistance;
1331
1332         node.SetValue( seedValue );
1333         node.SetIndex( seedPosition );
1334
1335         seeds->Initialize();
1336         seeds->InsertElement( 0, node );
1337
1338         fastMarching->SetTrialPoints( seeds );
1339
1340         fastMarching->SetSpeedConstant( 1.0 );
1341
1342         fastMarching->SetOutputSize(
1343                         connector->GetOutput()->GetBufferedRegion().GetSize() );
1344
1345         fastMarching->SetStoppingValue( 800 );
1346         try
1347     {
1348
1349         connector2->Update();
1350         vtkImageData *idata = connector2->GetOutput();
1351
1352         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1353
1354         cntVTK->SetInput( idata );
1355
1356         cntVTK->SetNumberOfContours( 1 );
1357         cntVTK->SetValue( 0, 255 );
1358         cntVTK->Update( );
1359         cntVTK->UpdateInformation();
1360
1361         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1362         cpd->SetInput( cntVTK->GetOutput( ) );
1363         cpd->Update( );
1364         cpd->UpdateInformation();
1365
1366         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1367         conn->SetExtractionModeToLargestRegion( );
1368         conn->SetInput( cpd->GetOutput( ) );
1369         conn->Update( );
1370         conn->UpdateInformation();
1371
1372         vtkStripper* vtkstripper = vtkStripper::New( );
1373         vtkstripper->SetInput( conn->GetOutput() );
1374         vtkstripper->Update();
1375         vtkstripper->UpdateInformation();
1376
1377
1378         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1379         //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1380         polyDataResult->Update( );
1381         polyDataResult->UpdateInformation();
1382
1383         //EED
1384                 /*
1385         ofstream myfile;
1386         myfile.open ("C:/Creatis/example.txt");
1387         myfile << "\n";
1388         polyDataResult->Print(myfile);
1389         myfile << "-------------------------------------\n";
1390         polyDataResult->GetLines()->Print(myfile);
1391         myfile.close();*/
1392
1393         cntVTK          -> Delete();
1394         cpd                     -> Delete();
1395         conn            -> Delete();
1396
1397
1398         //--Calculating control points
1399
1400         std::vector<double> vecX;
1401         std::vector<double> vecY;
1402         std::vector<double> vecXo;
1403         std::vector<double> vecYo;
1404         std::vector<double>::iterator vecXoi;
1405         std::vector<double>::iterator vecYoi;
1406         std::vector<double> vecZ;
1407
1408         std::vector<double> vecCtrlPointX;
1409         std::vector<double> vecCtrlPointY;
1410         std::vector<double> vecCtrlPointZ;
1411
1412
1413         double *p;
1414         double xAct=0;
1415         double yAct=0;
1416         int ii,size=polyDataResult->GetNumberOfPoints();
1417         ofstream myfile;
1418         myfile.open ("C:/Creatis/example2.txt");
1419
1420         size=polyDataResult->GetNumberOfPoints();
1421         for (ii=0;ii<size;ii++)
1422         {
1423                 if(ii==0)
1424                 {
1425                         xAct=x;
1426                         yAct=y;
1427                 }
1428                 p       = polyDataResult->GetPoint(ii);
1429                 double x=p[0];
1430                 double y=p[1];
1431                 /*if(fabs(yAct-y)>20)
1432                 {
1433                         if((xAct-x)>1 || (xAct-x)<-1)
1434                         {
1435                         vecX.push_back( p[0] );
1436                         vecY.push_back( p[1] );
1437                         myfile <<p[0]<<","<<p[1]<<"\n";
1438                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1439                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1440                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1441                         vecZ.push_back( 900 );
1442                         xAct=x;
1443                         yAct=y;
1444                         }
1445                         else
1446                         {
1447                                 vecXo.push_back(p[0]);
1448                                 vecYo.push_back(p[1]);
1449                         }
1450
1451                 }
1452                 else*/ if(fabs(xAct-x)>11)
1453                 {
1454                         vecXo.push_back(p[0]);
1455                         vecYo.push_back(p[1]);
1456                 }
1457                 else
1458                 {
1459                 vecX.push_back( p[0] );
1460                 myfile <<p[0]<<","<<p[1]<<"\n";
1461                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1462                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1463                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1464                 vecY.push_back( p[1] );
1465                 vecZ.push_back( 900 );
1466                 xAct=x;
1467                 yAct=y;
1468                 }
1469
1470
1471         }
1472
1473         while(!vecXo.empty())
1474         {
1475                 vecX.push_back(vecXo.back());
1476                 //std::cout<<" x Siguiente "<<vecXo.back();
1477                 vecXo.pop_back();
1478                 vecZ.push_back( 900 );
1479         }
1480         while(!vecYo.empty())
1481         {
1482                 vecY.push_back(vecYo.back());
1483                         vecYo.pop_back();
1484         }
1485         myfile.close();
1486
1487         /*for(int l=0;l<vecX.size();l++)
1488         {
1489                 if(l==0)
1490                 {
1491             vecXo.push_back(p[0]);
1492                         vecYo.push_back(p[1]);
1493                 }
1494                 else
1495                 {
1496                         if(vecXoi[l-1]==)
1497                         {
1498                         }
1499                 }
1500
1501         }*/
1502
1503         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1504
1505         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1506
1507         int method=2;
1508         if (method==0){
1509                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1510         }
1511         else if (method==1){
1512                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1513         }
1514         else if (method==2){
1515                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1516                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1517         }
1518         //--Adding contour to the system
1519
1520         std::vector<int> actualInstantVector;
1521         _instantPanel->getInstant( actualInstantVector );
1522         actualInstantVector[1]=z;
1523
1524         int j,sizeCtrPt = vecCtrlPointX.size();
1525
1526         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1527         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1528         if (sizeCtrPt>=3){
1529                 for (j=0 ; j<sizeCtrPt ; j++)
1530                 {
1531                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1532                 } // for
1533                 std::string theName;
1534                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1535                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1536                 bool addedModel = theName.compare("") != 0;
1537                 if( addedModel )
1538                 {
1539                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1540                         _theViewPanel->getSpacing(spc);
1541                         //Adding the manualContourControler to interface objects structure
1542                         //Adding the manualViewContour to interface objects structure
1543                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1544                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1545                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1546                 }       // if addedModel
1547         } // if sizeCtrPt
1548
1549
1550
1551                  WriterType::Pointer writer = WriterType::New();
1552          CastFilterType3::Pointer caster = CastFilterType3::New();
1553
1554                  caster->SetInput( gradientMagnitude->GetOutput() );
1555                  writer->SetInput( caster->GetOutput() );
1556                  writer->SetFileName("Gradient Magnitude.png");
1557                  caster->SetOutputMinimum(   0 );
1558                  caster->SetOutputMaximum( 255 );
1559                  writer->Update();
1560
1561                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1562                  WriterType::Pointer writer2 = WriterType::New();
1563
1564                  caster2->SetInput( sigmoid->GetOutput() );
1565                  writer2->SetInput( caster2->GetOutput() );
1566                  writer2->SetFileName("Sigmoid.png");
1567                  caster2->SetOutputMinimum(   0 );
1568                  caster2->SetOutputMaximum( 255 );
1569                  writer2->Update();
1570
1571                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1572                  WriterType::Pointer writer3 = WriterType::New();
1573
1574                  caster3->SetInput( fastMarching->GetOutput() );
1575                  writer3->SetInput( caster3->GetOutput() );
1576                  writer3->SetFileName("FastMarching.bmp");
1577                  caster3->SetOutputMinimum(   0 );
1578                  caster3->SetOutputMaximum( 255 );
1579                  writer3->Update();
1580
1581                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1582                  WriterType::Pointer writer4 = WriterType::New();
1583
1584                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1585                  writer4->SetInput( caster4->GetOutput() );
1586                  writer4->SetFileName("GeodesicActiveContour.png");
1587                  caster4->SetOutputMinimum(   0 );
1588                  caster4->SetOutputMaximum( 255 );
1589                  writer4->Update();
1590
1591                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1592                  WriterType::Pointer writer5 = WriterType::New();
1593
1594                  caster5->SetInput( zeroCrossing->GetOutput() );
1595                  writer5->SetInput( caster5->GetOutput() );
1596                  writer5->SetFileName("ZeroCrossing.bmp");
1597                  caster5->SetOutputMinimum(   0 );
1598                  caster5->SetOutputMaximum( 255 );
1599                  writer5->Update();
1600     }
1601   catch( itk::ExceptionObject & excep )
1602     {
1603     std::cerr << "Exception caught !" << std::endl;
1604     std::cerr << excep << std::endl;
1605     }
1606 }
1607
1608 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1609
1610         //JCP 20-10-08 Undo redo implementation
1611         saveState();
1612         //JCP 20-10-08 Undo redo implementation
1613
1614         wxBusyCursor wait;
1615         int                                     x                                       = _theViewPanel->GetX();
1616         int                                     y                                       = _theViewPanel->GetY();
1617         int                                     z                                       = _theViewPanel->GetZ();
1618         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1619         RefreshInterface();
1620 }
1621
1622
1623 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1624 {
1625         int typeofcontour = 1;
1626         //--Extracting Contour
1627         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1628         vtkImageData    *imagedata      = getImageData();
1629 //              double                  *range          = imagedata->GetScalarRange();
1630 //              double                  thr                     = 1;
1631
1632         vtkImageReslice *imageReslice = vtkImageReslice::New();
1633 //EED
1634 //              double spc[3];
1635 //              imagedata->GetSpacing(spc);
1636 //              x = x*spc[0];
1637 //              y = y*spc[1];
1638 //              z = z*spc[3];
1639
1640         imageReslice->SetInput( imagedata );
1641         imageReslice->SetInformationInput(imagedata);
1642         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1643         imageReslice->SetResliceAxesOrigin(0,0,z);
1644         imageReslice->SetOutputDimensionality(2);
1645         imageReslice->SetInterpolationModeToLinear();
1646
1647         imagedata = imageReslice->GetOutput();
1648         imagedata->Update();
1649         imagedata->UpdateInformation();
1650
1651         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1652         cntVTK->SetInput( imagedata );
1653
1654         cntVTK->SetNumberOfContours( 1 );
1655         //cntVTK->SetValue( 0, vmin );
1656 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1657         cntVTK->SetValue( 1, isovalue );
1658 //      cntVTK->SetValue( 1, vmax );
1659         cntVTK->Update( );
1660         cntVTK->UpdateInformation();
1661
1662         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1663         cpd->SetInput( cntVTK->GetOutput( ) );
1664         cpd->ConvertLinesToPointsOff( );
1665         cpd->Update( );
1666         cpd->UpdateInformation();
1667
1668         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1669         conn->SetExtractionModeToClosestPointRegion( );
1670         //conn->SetMaxRecursionDepth( 3000 );
1671
1672         conn->SetInput( cpd->GetOutput( ) );
1673
1674         conn->SetClosestPoint( x, y, 0 );
1675         conn->Update( );
1676         conn->UpdateInformation();
1677
1678         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1679         cpd2->SetInput( conn->GetOutput( ) );
1680         cpd2->Update();
1681         cpd2->UpdateInformation();
1682
1683         vtkStripper* vtkstripper = vtkStripper::New( );
1684         vtkstripper->SetInput( cpd2->GetOutput() );
1685         vtkstripper->Update();
1686         vtkstripper->UpdateInformation();
1687
1688
1689         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1690
1691         polyDataResult->Update( );
1692         polyDataResult->UpdateInformation();
1693
1694 /* EED
1695 ofstream myfile;
1696 myfile.open ("c:/temp/example.txt");
1697 myfile << "\n";
1698 polyDataResult->Print(myfile);
1699 myfile << "-------------------------------------\n";
1700 polyDataResult->GetLines()->Print(myfile);
1701 myfile.close();
1702 */
1703
1704         cntVTK          -> Delete();
1705         cpd2            -> Delete();
1706         cpd                     -> Delete();
1707         conn            -> Delete();
1708
1709
1710 //--Calculating control points
1711
1712         std::vector<double> vecX;
1713         std::vector<double> vecY;
1714         std::vector<double> vecZ;
1715
1716         std::vector<double> vecCtrlPointX;
1717         std::vector<double> vecCtrlPointY;
1718         std::vector<double> vecCtrlPointZ;
1719
1720
1721         double *p;
1722         int ii,size=polyDataResult->GetNumberOfPoints();
1723         int id;
1724         for (ii=1;ii<=size;ii++)
1725         {
1726                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1727                 p       = polyDataResult->GetPoint(id);
1728 //              double x=p[0];
1729 //              double y=p[1];
1730                 vecX.push_back( p[0] );
1731                 vecY.push_back( p[1] );
1732                 vecZ.push_back( 900 );
1733 //                      vecZ.push_back( p[2] );
1734         }
1735
1736
1737         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1738         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1739
1740 //PROOFS
1741         /*if (methodRadiobox->GetSelection()==0){
1742                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1743         }
1744         if (methodRadiobox->GetSelection()==1){
1745                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1746         }
1747         if (methodRadiobox->GetSelection()==2){
1748                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1749                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1750         }*/
1751
1752         if (method==0){
1753                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1754         }
1755         else if (method==1){
1756                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1757         }
1758         else if (method==2){
1759                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1760                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1761         }
1762
1763         //--Adding contour to the system
1764
1765         std::vector<int> actualInstantVector;
1766         _instantPanel->getInstant( actualInstantVector );
1767         actualInstantVector[1]=z;
1768
1769         int j,sizeCtrPt = vecCtrlPointX.size();
1770         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1771         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1772         if (sizeCtrPt>=3){
1773                 for (j=0 ; j<sizeCtrPt ; j++)
1774                 {
1775                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1776                 } // for
1777                 std::string theName;
1778                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1779                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1780                 bool addedModel = theName.compare("") != 0;
1781                 if( addedModel )
1782                 {
1783                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1784                         _theViewPanel->getSpacing(spc);
1785                         //Adding the manualContourControler to interface objects structure
1786                         //Adding the manualViewContour to interface objects structure
1787                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1788                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1789                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1790                 }       // if addedModel
1791         } // if sizeCtrPt
1792 }
1793 int wxContourMainFrame::GetImageDataSizeZ(){
1794         return _theViewPanel->GetImageDataSizeZ();
1795 }
1796
1797 void wxContourMainFrame::GetImageDataRange(double *range){
1798         _theViewPanel->GetImageDataRange(range);
1799 }
1800
1801 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
1802         //JCP 20-10-08 Undo redo implementation
1803         saveState();
1804         //JCP 20-10-08 Undo redo implementation
1805
1806         wxBusyCursor wait;
1807         int                                     x                                       = _theViewPanel->GetX();
1808         int                                     y                                       = _theViewPanel->GetY();
1809         int z;
1810         double porcent;
1811         wxString tmpString;
1812         double totalZ = maxZ-minZ+1;
1813         for( z=minZ ; z<=maxZ ; z++ )
1814         {
1815                 porcent = 100.0* (z-minZ)/totalZ;
1816                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
1817                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
1818                 //_staticTextSegmentation->SetLabel(tmpString);
1819                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
1820         }
1821         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
1822         RefreshInterface();
1823 }
1824
1825
1826 //Creates a reference line to be used as the axis of the mirroring
1827 void wxContourMainFrame::referenceLine()
1828 {
1829         if (_refLineControl==NULL)
1830         {
1831                 wxBusyCursor wait;
1832                 double spc[3];
1833
1834                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
1835                 vtkimagedata->GetSpacing(spc);
1836
1837                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1838
1839                 _refLineControl = new manualLineControler();
1840                 _refLineModel   = new manualContourModelLine();
1841                 _refLineView = new manualViewLine();
1842                 _refLineView->SetModel( _refLineModel );
1843                 _refLineView->SetWxVtkBaseView( viewer2D );
1844                 _refLineView->SetRange( 2 );
1845                 _refLineView->SetZ( 1200 );
1846
1847                 _refLineView->SetSpacing(spc);
1848
1849                 _refLineView->SetColorNormalContour(0, 0, 1);
1850                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
1851                 _refLineView->SetWidthLine(4);
1852
1853                 _refLineControl->SetModelView( _refLineModel , _refLineView );
1854                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
1855                 style->AddInteractorStyleMaracas( _refLineControl );
1856                 _refLineModel->SetCloseContour(false);
1857                 _refLineControl->CreateNewManualContour();
1858
1859 //AD: Inicializar el mirroring con una linea ya pintada
1860         /*
1861                 double z = _refLineControl->GetZ();
1862
1863                 int imageDim[3];
1864                 image->GetDimensions(imageDim);
1865                 double x = (double) imageDim[0]/2;
1866                 double y1 = (double) (imageDim[1]/2)+15;
1867                 double y2 = (double) (imageDim[1]/2)-15;
1868
1869                 _refLineControl->AddPoint(x,y1,z);
1870                 _refLineControl->AddPoint(x,y2,z);
1871                 _refLineControl->SetCompleteCreation(true);
1872
1873                 _refLineModel->AddPoint(x,y1,z);
1874                 _refLineModel->AddPoint(x,y2,z);
1875                 _refLineModel->UpdateSpline();
1876
1877                 _refLineView->UpdateViewPoint(0);
1878                 _refLineView->UpdateViewPoint(1);
1879         */
1880
1881                 _refLineControl->SetActive(true);
1882                 _refLineView->RefreshContour();
1883         }
1884 }
1885
1886 //Hides the referenceLine
1887 void wxContourMainFrame::refLineHide()
1888 {
1889         if (_refLineControl!=NULL)
1890         {
1891                 if (_refLineControl->GetActive())
1892                 {
1893                         _refLineView->RemoveCompleteContourActor();
1894                         _refLineControl->SetEditable(false);
1895                         _refLineControl->SetActive(false);
1896
1897                         RefreshInterface();
1898                 }
1899         }
1900 }
1901
1902 //Shows the referenceLine
1903 void wxContourMainFrame::refLineShow()
1904 {
1905         if (_refLineControl!=NULL)
1906         {
1907                 if (_refLineControl->GetActive()==false)
1908                 {
1909                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1910
1911                         _refLineView->SetModel( _refLineModel );
1912                         _refLineView->SetWxVtkBaseView( viewer2D );
1913                         _refLineView->SetRange( 2 );
1914                         _refLineView->SetZ( 1200 );
1915
1916                         _refLineControl->SetModelView( _refLineModel , _refLineView );
1917                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
1918                         style->AddInteractorStyleMaracas( _refLineControl );
1919                         _refLineControl->CreateNewManualContour();
1920                         _refLineControl->SetActive(true);
1921                         _refLineView->RefreshContour();
1922
1923                         RefreshInterface();
1924                 }
1925         }
1926 }
1927
1928 void wxContourMainFrame::refLineChangeWidth(int width)
1929 {
1930         _refLineView->SetWidthLine(width);
1931         _refLineView->RefreshContour();
1932
1933         RefreshInterface();
1934 }
1935
1936
1937 void wxContourMainFrame::onMirror()
1938 {
1939         //AD:02-09
1940         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1941         std::vector<std::string> filterCurrentSelection;
1942
1943         std::vector<int> tempVector;
1944         _instantPanel->getInstant( tempVector );
1945     _performingOperation->reset();
1946         _performingOperation->setStartCommand( COPY );
1947         _performingOperation->setStartOperationInstantVector( tempVector );
1948         _performingOperation->setKeyNamesOperationElems( currentSelection );
1949
1950         char theStartCommand = _performingOperation->getStartCommand();
1951         if (  theStartCommand == COPY )
1952         {
1953                 //JCP 20-10-08 Undo redo implementation
1954                 saveState();
1955                 //JCP 20-10-08 Undo redo implementation
1956                 std::vector<int> tempVector;
1957                 _instantPanel->getInstant( tempVector );
1958                 _performingOperation->setEndOperationInstantVector ( tempVector );
1959                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
1960                 int i,size = elems.size();
1961                 for( i=0; i<size; i++ )
1962                 {
1963                         createMirrorContourOf( elems[i], tempVector, i>0 );
1964                 }
1965         }
1966
1967         //deleteContour( _refName );
1968         //_refName = "";
1969 }
1970
1971 void wxContourMainFrame::onThreshold()
1972 {
1973         int     z = _theViewPanel->GetZ();
1974         double range[2];
1975
1976         vtkImageData * img = getImageData();
1977         img->GetScalarRange(range);
1978
1979         int minTot = floor (range[0]);
1980         int maxTot = ceil (range[1]);
1981
1982         double minMax[2];
1983         _pannew->onThresholdInstantChange(minMax);
1984         int minVal = floor (minMax[0]);
1985         int maxVal = floor (minMax[1]);
1986
1987         if (!_actorPresent)
1988         {
1989                 if (_imageReslicer==NULL)
1990                 {
1991                         _imageReslicer = vtkImageReslice::New();
1992                         _imageReslicer->SetInput( img );
1993                         _imageReslicer->SetInformationInput(img);
1994                         _imageReslicer->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1995                         _imageReslicer->SetOutputDimensionality(2);
1996                         _imageReslicer->SetInterpolationModeToLinear();
1997                 }
1998
1999                 _imageReslicer->SetResliceAxesOrigin(0,0,z);
2000
2001                 img = _imageReslicer->GetOutput();
2002                 img->Update();
2003                 img->UpdateInformation();
2004
2005                 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
2006
2007                 if (_thresholdTable==NULL)
2008                 {
2009                         //Lookup Table
2010                         _thresholdTable = vtkLookupTable::New();
2011                         _thresholdTable->SetNumberOfTableValues(maxTot+1);
2012                         _thresholdTable->SetTableRange(range);
2013                         _thresholdTable->SetAlphaRange(0, 1);
2014                         _thresholdTable->SetValueRange(0, 1);
2015                         _thresholdTable->SetSaturationRange(0, 0);
2016                         _thresholdTable->SetRampToLinear( );
2017                 }
2018
2019                 //Assign a fake color for the upper image, and set the white as transparent
2020                 int i;
2021                 for(i = minTot; i <= maxTot; i++)
2022                 {
2023                         if( i >= minVal && i <= maxVal )
2024                         {
2025                                 _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1);
2026                         }
2027                         else if( i >= minTot && i < minVal )
2028                         {
2029                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2030                         }
2031                         else if( i > maxVal && i < maxTot )
2032                         {
2033                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2034                         }
2035                         else
2036                         {
2037                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2038                         }
2039                 }
2040                 _thresholdTable->Build( );
2041
2042                 if (_thresholdMapper==NULL)
2043                 {
2044                         _thresholdMapper = vtkImageMapToColors::New( );
2045                 }
2046
2047                 _thresholdMapper->SetLookupTable( _thresholdTable );
2048                 _thresholdMapper->SetInput( img );
2049
2050                 if (_thresholdActor==NULL)
2051                 {
2052                         _thresholdActor = vtkImageActor::New( );
2053                         _thresholdActor->SetOpacity( 0.6 );
2054                         _thresholdActor->InterpolateOn(  );
2055                         _thresholdActor->SetPosition( 0,0, 900-1 );
2056                 }
2057
2058                 _thresholdActor->SetInput( _thresholdMapper->GetOutput() );
2059
2060                 baseView->GetRenderer()->AddActor( _thresholdActor );
2061                 _actorPresent = true;
2062         }
2063
2064         else
2065         {
2066                 _imageReslicer->SetResliceAxesOrigin(0,0,z);
2067                 img = _imageReslicer->GetOutput();
2068                 img->Update();
2069                 img->UpdateInformation();
2070
2071                 //Assign a fake color for the upper image, and set the white as transparent
2072                 int i;
2073                 for(i = minTot; i <= maxTot; i++)
2074                 {
2075                         if( i >= minVal && i <= maxVal )
2076                         {
2077                                 _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1);
2078                         }
2079                         else if( i >= minTot && i < minVal )
2080                         {
2081                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2082                         }
2083                         else if( i > maxVal && i < maxTot )
2084                         {
2085                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2086                         }
2087                         else
2088                         {
2089                                 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
2090                         }
2091                 }
2092
2093                 _thresholdTable->Build( );
2094                 _thresholdMapper->SetLookupTable( _thresholdTable );
2095                 _thresholdMapper->SetInput( img );
2096                 _thresholdActor->SetInput( _thresholdMapper->GetOutput() );
2097         }
2098                         /*
2099                                 vtkImageViewer2* viewer = vtkImageViewer2::New();
2100                                 viewer->SetInput( upperImageActor->GetInput() );
2101                                 viewer->SetColorLevel((range[1]-range[0])/2);
2102                                 viewer->SetColorWindow(range[1]);
2103                                 viewer->GetRenderer()->AddActor( upperImageActor );
2104                                 viewer->Render();
2105                         */
2106         _theViewPanel->RefreshInterface();
2107 }
2108
2109
2110 void wxContourMainFrame::onThresholdChange()
2111 {
2112         if (_actorPresent)
2113         {
2114                 onThreshold();
2115         }
2116 }
2117
2118 void wxContourMainFrame::onThresholdInterpolation(bool interpolate)
2119 {
2120         if (_thresholdActor!=NULL)
2121         {
2122                 if (interpolate)
2123                 {
2124                         _thresholdActor->InterpolateOn( );
2125                 }
2126
2127                 else
2128                 {
2129                         _thresholdActor->InterpolateOff( );
2130                 }
2131
2132                 _theViewPanel->RefreshInterface();
2133         }
2134 }
2135
2136 void wxContourMainFrame::onThresholdChangeOpacity (int opacity)
2137 {
2138         if (_actorPresent)
2139         {
2140                 _thresholdActor->SetOpacity(opacity*0.1);
2141         }
2142
2143         _theViewPanel->RefreshInterface();
2144 }
2145
2146 void wxContourMainFrame::onThresholdRemove()
2147 {
2148         if (_actorPresent)
2149         {
2150                 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
2151                 baseView->GetRenderer()->RemoveActor( _thresholdActor );
2152                 _actorPresent = false;
2153         }
2154
2155         _theViewPanel->RefreshInterface();
2156 }
2157
2158 void wxContourMainFrame::showAxis(bool show)
2159 {
2160         _theViewPanel->SetVisibleAxis(show);
2161         _theViewPanel->Refresh();
2162 }
2163
2164
2165 void wxContourMainFrame::onRigidPressed(){
2166         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2167         int elementsSelected = currentSelection.size();
2168
2169         if ( elementsSelected >= 1 ){
2170                 //JCP 20-10-08 Undo redo implementation
2171                 saveState();
2172                 //JCP 20-10-08 Undo redo implementation
2173
2174                 std::vector<int> tempVector;
2175                 _instantPanel->getInstant( tempVector );
2176                 Instant instant(&tempVector);
2177
2178                 int i , size=currentSelection.size();
2179                 for ( i=0 ; i<size ; i++ )
2180                 {
2181                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2182                 } // i
2183         }
2184 }
2185
2186 void wxContourMainFrame::onWidthOfContour(double width){
2187
2188         _theViewPanel->removeSceneContours();
2189         _theViewPanel->SetWidthContour(width);
2190
2191         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2192
2193         RefreshInterface();
2194 }
2195
2196 int wxContourMainFrame::getColorWindow()
2197 {
2198         /*
2199         double range[2];
2200         vtkImageData * img = getImageData();
2201         img->GetScalarRange(range);
2202
2203         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2204
2205         return (int)range[1];
2206         */
2207         return _theViewPanel->getColorWindow();
2208 }
2209
2210 int wxContourMainFrame::getWindowLevel()
2211 {
2212         /*
2213         double range[2];
2214         vtkImageData * img = getImageData();
2215         img->GetScalarRange(range);
2216
2217         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2218
2219         return (int)range[1];
2220         */
2221         return _theViewPanel->getWindowLevel();
2222 }
2223
2224 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2225         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2226
2227         RefreshInterface();
2228 }
2229
2230 void wxContourMainFrame::onInterpolation(bool interpolate){
2231         _theViewPanel->onInterpolation(interpolate);
2232         RefreshInterface();
2233 }
2234
2235 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2236         _instantPanel->setConceptValue( name, actual );
2237 }
2238
2239 void wxContourMainFrame::resetAppend(){
2240         kernelManager->resetAppend();
2241
2242 }
2243
2244 void wxContourMainFrame::onSpreadAdd(){
2245         std::vector<double> vecX;
2246         std::vector<double> vecY;
2247         std::vector<double> vecZ;
2248         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2249
2250         std::vector<int> tempVector;
2251         _instantPanel->getInstant( tempVector );
2252
2253         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2254
2255         interfMainPanel::getInstance()->appendStringSpread(val);
2256
2257 }
2258
2259 void wxContourMainFrame::onSpreadGo(int type){
2260
2261         //JCP 20-10-08 Undo redo implementation
2262         saveState();
2263         //JCP 20-10-08 Undo redo implementation
2264
2265         wxBusyCursor wait;
2266         std::vector<double> vecCtrlPointX;
2267         std::vector<double> vecCtrlPointY;
2268         std::vector<double> vecCtrlPointZ;
2269         double  minZ,maxZ;
2270         int z;
2271
2272         std::vector<int> tempVector;
2273         _instantPanel->getInstant( tempVector );
2274 //              tempVector[1];
2275
2276         kernelManager->getMaxMinZ(&minZ,&maxZ);
2277 //JSTG_16-07-08_----------------------------------------------------------------
2278         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2279         kernelManager->CalculeSplinePropagation();
2280
2281         double          totalZ = maxZ-minZ+1;
2282         double          porcent;
2283         wxString        tmpString;
2284 //--------------------------------------------------------------------
2285         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2286         {
2287                 porcent = 100.0* (z-minZ)/totalZ;
2288                 int numero = (int)(z-minZ+1)/(int)totalZ;
2289                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2290
2291                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2292
2293                 int typeofcontour = 1;
2294                 std::string theName;
2295                 manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2296
2297                 if( manModelContour!=NULL ){
2298                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2299                         this->_theViewPanel->getSpacing(spc);
2300                         //Adding the manualContourControler to interface objects structure
2301                         //Adding the manualViewContour to interface objects structure
2302                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2303                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2304                 } // if addedModel
2305         }
2306         if(z > maxZ){
2307                 porcent = 100.0;
2308                 int numero = (int)(z-minZ+1)/(int)totalZ;
2309                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2310
2311                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2312         }// for z
2313         //RefreshInterface();
2314 }
2315
2316 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2317
2318 }
2319
2320 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2321         std::vector<int> tempVector;
2322         _instantPanel->getInstant(tempVector);
2323         //Asignation of slide number should be different ex by name
2324         tempVector[1]=slide;
2325         return kernelManager->getOutlinesNameAtInstant(tempVector);
2326 }
2327
2328 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ)
2329 {
2330         int maxContourGroup     =       0;
2331
2332         ContourExtractData      *contourextractdata = new ContourExtractData();
2333
2334         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2335
2336         std::vector<manualContourModel*> lstManConMod;
2337         std::vector<manualContourModel*> lstManConModTmp;
2338         std::vector<manualContourModel*> lstManConModExp;
2339         std::vector<double> pLstValue;
2340         std::vector<double> pLstValuePosX;
2341         std::vector<double> pLstValuePosY;
2342         std::vector<double> pLstValuePosZ;
2343
2344         int             resultSize;
2345         int             resultGrayRangeCount;
2346         double  resultMin;
2347         double  resultMax;
2348         double  resultAverage;
2349         double  resultStandardeviation;
2350
2351         std::vector<int> tempVector;
2352         _instantPanel->getInstant( tempVector );
2353
2354         vtkImageData *imagedata = _theViewPanel->getImageData();
2355         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2356         int z;
2357         int ii,sizeLstContourThings;
2358
2359
2360         int minZ,maxZ;
2361         double totalZ;
2362         double porcent;
2363         wxString tmpString;
2364
2365
2366
2367         if (selection==0 ) // actual slice
2368         {
2369                 std::vector<int> tempVector;
2370                 _instantPanel->getInstant( tempVector );
2371                 int actualSlice = tempVector[1];
2372                 minZ    = actualSlice;
2373                 maxZ    = actualSlice;
2374         }
2375         else if (selection==2 ) // All slices
2376         {
2377                 minZ    = 0;
2378                 maxZ    = sizeZ-1;
2379         }
2380         else if (selection==1 ) // slice range
2381         {
2382                 minZ    = minimumZ;
2383                 maxZ    = maximumZ;
2384         }
2385
2386
2387         totalZ  = maxZ-minZ+1;
2388         contourextractdata->SetImage( imagedata);
2389
2390 // For each slice..
2391         for ( z=minZ ; z<=maxZ ; z++ )
2392         {
2393
2394                 porcent = 100.0* (z-minZ)/totalZ;
2395                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2396
2397                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2398                 //_staticTextInformation->SetLabel(tmpString);
2399
2400                 //Extraction data from contours of each slice
2401                 contourextractdata->SetZtoBeAnalys(z);
2402
2403                 tempVector[1]=z;
2404                 Instant instant(&tempVector);
2405                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2406                 sizeLstContourThings = lstContourThings.size();
2407
2408                 lstManConMod.clear();
2409                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2410                 {
2411                         ContourThing **contourthing = lstContourThings[ii];
2412                         lstManConMod.push_back( (*contourthing)->getModel() );
2413                 }
2414                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2415
2416
2417                 wxString tempString;
2418                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2419                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2420                 //_grid->SetRowLabelValue(z, tempString );
2421 //EED004
2422                 int iContourGroup,sizeContourGroup;
2423                 if (typeContourGroup==3) // contour separete
2424                 {
2425                         sizeContourGroup=lstManConModExp.size();
2426                         if ( maxContourGroup<sizeContourGroup )
2427                         {
2428                                 maxContourGroup=sizeContourGroup;
2429                         }
2430                 } else {  // contour AND OR XOR
2431                         sizeContourGroup=1;
2432                         maxContourGroup=1;
2433                 }
2434
2435                 int tmpIntA;
2436
2437
2438
2439                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2440                         lstManConModTmp.clear();
2441                         if (typeContourGroup==3) // contour separete
2442                         {
2443                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2444                         } else {  // contour AND OR XOR
2445                                 lstManConModTmp = lstManConModExp;
2446                         }
2447
2448                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2449
2450                         pLstValue.clear();
2451                         pLstValuePosX.clear();
2452                         pLstValuePosY.clear();
2453                         pLstValuePosZ.clear();
2454                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2455                                                                                                                 &pLstValuePosX,
2456                                                                                                                 &pLstValuePosY,
2457                                                                                                                 &pLstValuePosZ);
2458                         // Statistics of each slice.
2459                         contourextractdata->Statistics( &pLstValue,
2460                                                                                         minimumZ,
2461                                                                                         maximumZ,
2462                                                                                         &resultGrayRangeCount,
2463                                                                                         &resultSize,
2464                                                                                         &resultMin,
2465                                                                                         &resultMax,
2466                                                                                         &resultAverage,
2467                                                                                         &resultStandardeviation);
2468
2469                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2470                         {
2471                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2472                         }
2473
2474                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2475
2476                         tempString.Printf(_T("%d"),resultSize);
2477                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2478
2479                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2480                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2481
2482                         tempString.Printf(_T("%f"),resultMin);
2483                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2484
2485                         tempString.Printf(_T("%f"),resultMax);
2486                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2487
2488                         tempString.Printf(_T("%f"),resultAverage);
2489                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2490
2491                         tempString.Printf(_T("%f"),resultStandardeviation);
2492                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2493
2494
2495                 } // for iContourGroup
2496         } // for z
2497
2498         int iTitleGroup;
2499         wxString tmpTitleString;
2500         int tmpIntB;
2501         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2502         {
2503                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2504                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2505                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2506
2507                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2508                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2509                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2510                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2511                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2512                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2513                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2514         }
2515
2516         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2517         delete contourextractdata;
2518 }
2519
2520 //AD: 29-05-09
2521 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2522         int typeContourGroup, bool XYZValues, bool contourImage, bool statistics)
2523 {
2524         if (XYZValues)
2525         {
2526                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2527         }
2528
2529         if (contourImage)
2530         {
2531                 vtkImageData * mask;
2532                 vtkImageData * value;
2533                 this->getMaskValue(&mask, &value, typeContourGroup);
2534                 this->SaveImageResult( directory , namefile, mask, value);
2535         }
2536
2537         if (statistics)
2538         {
2539                 std::ostringstream name;
2540                 name << filename << ".xls";
2541
2542
2543                 FILE *pFile=fopen(name.str().c_str(),"w+");
2544
2545                 int sizeZ = _theViewPanel->GetImageDataSizeZ();
2546
2547                 wxString tmpString;
2548                 int i,j,maxX,maxY=sizeZ;
2549                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2550
2551                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2552                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2553                 {
2554                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2555                                 fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2556                 }
2557                 fprintf(pFile,"\n" );
2558
2559
2560
2561                 for ( j=0; j<maxY ; j++)
2562                 {
2563                         fprintf(pFile,"%d\t" , j );
2564                         for (i=0 ; i<maxX ; i++){
2565                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2566                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2567                         } // for i
2568                         fprintf(pFile,"\n"  );
2569                 } // for j
2570
2571                 fclose(pFile);
2572         }
2573 }
2574
2575 //AD: 29-05-09
2576 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2577 {
2578         wxBusyCursor wait;
2579         ContourExtractData      *contourextractdata = new ContourExtractData();
2580         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2581         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2582
2583         std::vector<manualContourModel*> lstManConMod;
2584         std::vector<manualContourModel*> lstManConModTmp;
2585         std::vector<manualContourModel*> lstManConModExp;
2586         std::vector<double> pLstValue;
2587         std::vector<double> pLstValuePosX;
2588         std::vector<double> pLstValuePosY;
2589         std::vector<double> pLstValuePosZ;
2590
2591         std::vector<int> tempVector;
2592         _instantPanel->getInstant( tempVector );
2593
2594         vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2595         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2596         int z;
2597         int ii,sizeLstContourThings;
2598
2599
2600         int minZ,maxZ;
2601         double totalZ;
2602         double porcent;
2603         wxString tmpString;
2604         minZ    = 0;// _mbarrange->GetStart();
2605         maxZ    = sizeZ;//_mbarrange->GetEnd();
2606         totalZ  = maxZ-minZ+1;
2607
2608         contourextractdata->SetImage( imagedata);
2609
2610 // For each slice..
2611         for ( z=0 ; z<sizeZ ; z++)
2612         {
2613
2614                 porcent = 100.0* (z-minZ)/totalZ;
2615
2616                 tmpString.Printf(_T("Saving Values"));
2617                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2618                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2619                 //_staticTextInformation->SetLabel(tmpString);
2620
2621
2622                 //Extraction data from contours of each slice
2623                 contourextractdata->SetZtoBeAnalys( z);
2624
2625                 tempVector[1]=z;
2626                 Instant instant(&tempVector);
2627                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2628                 sizeLstContourThings = lstContourThings.size();
2629
2630                 lstManConMod.clear();
2631                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2632                 {
2633                         ContourThing **contourthing = lstContourThings[ii];
2634                         lstManConMod.push_back( (*contourthing)->getModel() );
2635                 }
2636                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2637
2638
2639 //EED004
2640
2641                 int iContourGroup,sizeContourGroup;
2642                 if (typeContourGroup==3) // contour separete
2643                 {
2644                         sizeContourGroup=lstManConModExp.size();
2645                 } else {  // contour AND OR XOR
2646                         sizeContourGroup=1;
2647                 }
2648
2649                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2650                         lstManConModTmp.clear();
2651                         if (typeContourGroup==3) // contour separete
2652                         {
2653                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2654                         } else {  // contour AND OR XOR
2655                                 lstManConModTmp = lstManConModExp;
2656                         }
2657
2658                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2659
2660                         pLstValue.clear();
2661                         pLstValuePosX.clear();
2662                         pLstValuePosY.clear();
2663                         pLstValuePosZ.clear();
2664                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2665                                                                                                                 &pLstValuePosX,
2666                                                                                                                 &pLstValuePosY,
2667                                                                                                                 &pLstValuePosZ);
2668
2669                         std::string temp = directory + "/" + namefile + "-slice";
2670                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2671                         temp = temp + ".txt";
2672
2673                         // LG 14/01/09 : using crea
2674                         wxString filename = crea::std2wx(temp);
2675                         /*filename.Printf(_T("%s"),directory.c_str());
2676                         filename.append(_T("\\"));
2677                         filename.append(_T("%s"),namefile.c_str());
2678                         filename.append(_T("-slice"));
2679                         filename.append(_T("%d"),z);
2680                         filename.append(_T("-cont"));
2681                         filename.append(_T("%d"),iContourGroup);
2682                         filename.append(_T(".txt"));*/
2683                         //                      filename.Printf(temp.c_str());
2684
2685
2686
2687                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2688                         fprintf(pFile,"value \t x \t y \t z\n"  );
2689                         int iLstValue,sizeLstValue=pLstValue.size();
2690                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2691                         {
2692                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2693                         }
2694                         fclose(pFile);
2695                 } // for  iContourGroup
2696         } // for z
2697         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2698         //_staticTextInformation->SetLabel( _T("") );
2699         delete contourextractdata;
2700 }
2701
2702 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup){
2703         wxBusyCursor wait;
2704         ContourExtractData      *contourextractdata = new ContourExtractData( true );
2705         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2706         if (typeContourGroup==3)
2707         {
2708                 typeContourGroup=1;
2709         }
2710         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2711
2712         std::vector<manualContourModel*> lstManConMod;
2713         std::vector<manualContourModel*> lstManConModTmp;
2714         std::vector<manualContourModel*> lstManConModExp;
2715
2716         std::vector<int> tempVector;
2717         _instantPanel->getInstant( tempVector );
2718
2719         vtkImageData *imagedata = _theViewPanel->getImageData();
2720         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2721         int z;
2722         int ii,sizeLstContourThings;
2723
2724
2725         int minZ,maxZ;
2726         double totalZ;
2727         double porcent;
2728
2729         wxString tmpString;
2730
2731         minZ    = 0;// _mbarrange->GetStart();
2732         maxZ    = sizeZ;//_mbarrange->GetEnd();
2733         totalZ  = maxZ-minZ+1;
2734
2735         contourextractdata->SetImage( imagedata);
2736
2737 // For each slice..
2738         for ( z=0 ; z<sizeZ ; z++)
2739         {
2740
2741                 porcent = 100.0* (z-minZ)/totalZ;
2742                 tmpString.Printf(_T("Saving Values"));
2743                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2744                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2745
2746                 //Extraction data from contours of each slice
2747                 contourextractdata->SetZtoBeAnalys( z);
2748
2749                 tempVector[1]=z;
2750                 Instant instant(&tempVector);
2751                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2752                 sizeLstContourThings = lstContourThings.size();
2753
2754                 lstManConMod.clear();
2755                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2756                 {
2757                         ContourThing **contourthing = lstContourThings[ii];
2758                         lstManConMod.push_back( (*contourthing)->getModel() );
2759                 }
2760                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2761
2762
2763                 int iContourGroup,sizeContourGroup;
2764                 if (typeContourGroup==3) // contour separete
2765                 {
2766                         sizeContourGroup=lstManConModExp.size();
2767                 } else {  // contour AND OR XOR
2768                         sizeContourGroup=1;
2769                 }
2770
2771                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2772                         lstManConModTmp.clear();
2773                         if (typeContourGroup==3) // contour separete
2774                         {
2775                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2776                         } else {  // contour AND OR XOR
2777                                 lstManConModTmp = lstManConModExp;
2778                         }
2779
2780                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2781                         contourextractdata->CalculateImageResult(); // with actual Z
2782
2783                 } // for  iContourGroup
2784         } // for z
2785
2786         (*value) = contourextractdata->GetVtkImageValueResult();
2787         (*mask) = contourextractdata->GetVtkImageMaskResult();
2788         delete contourextractdata;
2789 }
2790
2791 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2792 {
2793
2794         std::string temp = directory + "/" + namefile + "-Value.mhd";
2795
2796         wxString filename = crea::std2wx(temp);
2797         // LG
2798         //      filename.Printf(_T(temp.c_str()));
2799         //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2800         /*filename.Printf(_T("%s"),directory.c_str());
2801         filename.append(_T("\\"));
2802         filename.append(_T("%s"),namefile.c_str());
2803         filename.append(_T("-Value.mhd"));*/
2804
2805 // Image Value
2806         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2807         writerValueImage->SetInput( value );
2808         writerValueImage->SetFileName( (const char *)filename.mb_str() );
2809         writerValueImage->SetFileDimensionality( 3 );
2810         writerValueImage->Write( );
2811
2812 // Image Mask
2813         //              filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2814         temp = directory + "/" + namefile + "-Mask.mhd";
2815
2816         // LG 14/01/09 : using crea
2817         filename = crea::std2wx(temp);
2818         //      filename.Printf(_T(temp.c_str()));
2819
2820         /*filename.Printf(_T("%s"),directory.c_str());
2821         filename.append(_T("\\"));
2822         filename.append(_T("%s"),namefile.c_str());
2823         filename.append(_T("-Mask.mhd"));*/
2824
2825         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2826         writerMaskImage->SetInput( mask );
2827         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2828         writerMaskImage->SetFileDimensionality( 3 );
2829         writerMaskImage->Write( );
2830
2831         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2832
2833 }
2834
2835
2836
2837 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2838         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2839                 _theViewPanel->setActualVertical( value);
2840         }
2841         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
2842                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2843         }
2844
2845         changeInstant();
2846 }
2847
2848 void wxContourMainFrame::onSnakePressed(){
2849         std::vector<double> vecX;
2850         std::vector<double> vecY;
2851         std::vector<double> vecZ;
2852         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2853
2854         if (vecX.size()!=0){
2855                 std::vector<int> tempVector;
2856                 _instantPanel->getInstant( tempVector );
2857                 int i,size=vecZ.size();
2858                 int actualSlice = tempVector[1];
2859                 for ( i=0 ; i<size ; i++ )
2860                 {
2861                         vecZ[i] = actualSlice;
2862                 } // for
2863
2864                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2865                 wxPanel* panel = new wxPanel(dialog,-1);
2866                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2867          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2868                 dialog->ShowModal();
2869         } // if
2870
2871 }
2872
2873 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2874         std::string filename = kernelManager->getCurrentFileName();
2875         if(filename.compare("")!=0){
2876                 saveFileWithContours(filename);
2877         }else{
2878                 onSave();
2879         }
2880 }
2881 void wxContourMainFrame::ShowToolsPanel(bool show){
2882         _pannew->Show(show);
2883 }
2884