lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 //----------------------------------------------------------------------------------------------------------------
  27 // Class definition include
  28 //----------------------------------------------------------------------------------------------------------------
  29 #include "wxContourMainFrame.h"
  30
  31
  32
  33 //----------------------------------------------------------------------------------------------------------------
  34 // Includes
  35 //----------------------------------------------------------------------------------------------------------------
  36
  37
  38 #include "NameWrapper.h"
  39 #include "wx/artprov.h"
  40 #include "ConceptDataWrap.h"
  41 #include <creaWx.h>
  42
  43 #include <string>
  44 using namespace std;
  45
  46 //----------------------------------------------------------------------------------------------------------------
  47 // Class implementation
  48 //----------------------------------------------------------------------------------------------------------------
  49 /** @file wxContourMainFrame.cxx */
  50
  51         //------------------------------------------------------------------------------------------------------------
  52         // Constructors & Destructors
  53         //------------------------------------------------------------------------------------------------------------
  54
  55 wxContourMainFrame* wxContourMainFrame::instance=NULL;
  56 char wxContourMainFrame::COPY = 'C';
  57
  58         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  59                 //: wxPanel(parent, id, title, pos, size, style)
  60                 //: wxWindow(parent, id, pos, size, style)
  61                 : wxPanel(parent, id, pos, size, style)
  62         {
  63                 m_mgr.SetManagedWindow(this);
  64                 _contourGroup                           = 1;
  65                 _creatingContoursActive         = false;
  66                 _theViewPanel                           = NULL;
  67 //              _modelManager                           = NULL;
  68                 _instantPanel                           = NULL;
  69 //              _buttonsBar                                     = NULL;
  70 //              _gridPanel                                      = NULL;
  71 //              _drawToolsPanel                         = NULL;
  72 //              _operationsToolsPanel           = NULL;
  73                 //_autoFormsPanel                       = NULL;
  74 //              _standardToolsPanel                     = NULL;
  75 //              _editionToolsPanel                      = NULL;
  76 //              _listViewPanel                          = NULL;
  77 //              _sceneManager                           = NULL;
  78                 //_actualInstant                        = NULL;
  79                 _numberOfVariablesStatistics= 6+1;
  80
  81                 _refLineControl                         = NULL;
  82                 _refLineModel                           = NULL;
  83                 _refLineView                            = NULL;
  84 //              _actorPresent                           = false;
  85
  86                 // set up default notebook style
  87 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  88 //              m_notebook_theme = 0;
  89                 //wxContour_ActionCommandsID a;
  90
  91                 _contourextractdata                     = NULL;
  92                 _viewMaskImage                          = NULL;
  93                 _viewMaskImagePanel                     = NULL;
  94                 _viewThresholdImage                     = NULL;
  95                 _viewThresholdImagePanel        = NULL;
  96                 _viewColorLayerImagePanel       = NULL;
  97                 _frameShowResultImages          = NULL;
  98         }
  99
 100         wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
 101                 : wxPanel(parent, id, pos, size, style)
 102         {
 103                 m_mgr.SetManagedWindow(this);
 104                 _contourGroup                           = 1;
 105                 _creatingContoursActive         = false;
 106                 _theViewPanel                           = NULL;
 107                 _instantPanel                           = NULL;
 108                 _refLineControl                         = NULL;
 109                 _refLineModel                           = NULL;
 110                 _refLineView                            = NULL;
 111 //              _actorPresent                           = false;
 112                 _viewMaskImage                          = NULL;
 113                 _viewMaskImagePanel                     = NULL;
 114                 _viewThresholdImage                     = NULL;
 115                 _viewThresholdImagePanel        = NULL;
 116                 _viewColorLayerImagePanel       = NULL;
 117                 // set up default notebook style
 118                 m_notebook_style                        = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
 119                 m_notebook_theme                        = 0;
 120                 //wxContour_ActionCommandsID a;
 121                 _numberOfVariablesStatistics= 7;
 122                 _datadir                                        = datadir;
 123                 inredo                                          = 0;
 124                 inundo                                          = 0;
 125                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 126                 _performingOperation        = new PerformingOperation();
 127                 if(images.size() > 0)
 128                 {
 129                         this->setVectImages(images);
 130                 }
 131                 _contourextractdata                     = NULL;
 132 }
 133
 134 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
 135 {
 136         _images = imgs;
 137         #if defined(_WIN32)
 138                 std::string str_home(getenv("USERPROFILE"));
 139         #elif defined(__GNUC__)
 140                 std::string str_home(getenv("HOME"));
 141         #endif
 142         std::string                             strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 143         std::vector<std::string>        conceptNameVect;
 144         std::vector<int>                        conceptSizeVect;
 145         notebook                = this->createNotebook();
 146         kernelManager   = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 147         _instantPanel   = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 148         _theViewPanel   = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 149 //-------------------------------------------------------------
 150         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 151         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 152         double val = _theViewPanel->getCurrentDeep();
 153         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 154         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 155         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 156         //*******************changeInstant();
 157         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 158         this->configurePanels( );
 159 }
 160
 161
 162         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
 163         {
 164                 if(instance == NULL)
 165                 {
 166                         instance=new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 167                 }
 168                 return instance;
 169         }
 170
 171         std::vector<vtkImageData*> wxContourMainFrame::getVectImages()
 172         {
 173                 return kernelManager->getVectImages();
 174         }
 175
 176         wxContourMainFrame* wxContourMainFrame::getInstance()
 177         {
 178                 return instance;
 179         }
 180
 181         void wxContourMainFrame::resetInstance()
 182         {
 183                 instance->Destroy();
 184         }
 185
 186         wxContourMainFrame::~wxContourMainFrame()
 187         {
 188                 delete _contourextractdata;
 189                 deleteAllContours();
 190                 _pannew->Close();
 191                 interfMainPanel::resetInstance();
 192                 delete kernelManager;
 193                 instance = NULL;
 194                 //_pannew->Destroy();
 195                 //delete _pannew;
 196
 197                 m_mgr.UnInit();
 198                 //delete m_mgr;
 199
 200                 //El problema al cerrar la aplicacion puede estar asociado
 201                 //a que  wxAUINotebook esta en la aplicacion
 202                 //principal (wxContourGUIExample)tambien
 203                 //EED????               delete _theViewPanel;
 204                 //EED????               delete _instantPanel;
 205                 //EED????               delete _buttonsBar;
 206                 //EED????               delete _actualInstant;
 207                 //EED????               delete _sceneManager;
 208         }
 209
 210
 211         //------------------------------------------------------------------------------------------------------------
 212         // Creational and initialization methods using WxAui
 213         //------------------------------------------------------------------------------------------------------------
 214         //
 215         wxAuiNotebook * wxContourMainFrame::createNotebook()
 216         {
 217                 wxSize client_size = GetClientSize();
 218                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 219                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 220                 return noteBook;
 221         }
 222
 223
 224         //------------------------------------------------------------------------------------------------------------
 225         // Creational and initialization methods
 226         //------------------------------------------------------------------------------------------------------------
 227         bool wxContourMainFrame::configurePanels( )
 228         {
 229                 bool configured = _theViewPanel!=NULL;
 230
 231                 configured &= _theViewPanel!=NULL;
 232                 if( _theViewPanel!=NULL )
 233                 {
 234                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 235                         m_mgr.Update();
 236                 }
 237                 if( configured )
 238                 {
 239                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 240                         m_mgr.Update();
 241                 }
 242                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 243                 m_mgr.Update();
 244                 SetMinSize(wxSize(300,300));
 245                 m_mgr.Update();
 246                 return configured;
 247         }
 248
 249
 250         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 251                 {
 252                 bool configured = panel!=NULL;
 253                 configured &= panel!=NULL;
 254
 255                 if( configured )
 256                 {
 257                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 258                         m_mgr.Update();
 259                 }
 260                 return configured;
 261         }
 262
 263         //------------------------------------------------------------------------------------------------------------
 264         //  Attributes getters and setters
 265         //------------------------------------------------------------------------------------------------------------
 266
 267
 268
 269         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 270         {
 271                 _instantPanel = theInstantChooserPanel;
 272         }
 273
 274 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 275 //      {
 276 //              _buttonsBar = theButtonsBar;
 277 //      }
 278
 279 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 280 //      {
 281 //              _gridPanel = theGridPanel;
 282 //      }
 283
 284 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 285 //      {
 286 //              _drawToolsPanel = theDrawToolsPanel;
 287 //      }
 288
 289 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 290 //      {
 291 //              _operationsToolsPanel = theOperationsToolsPanel;
 292 //      }
 293
 294 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 295 //      {
 296 //              _autoFormsPanel = theAutoFormsPanel;
 297 //      }
 298
 299 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 300 //      {
 301 //              _standardToolsPanel= theStandardToolsPanel;
 302 //      }
 303
 304 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 305 //      {
 306 //              _editionToolsPanel =  theEditionToolsPanel;
 307 //      }
 308
 309 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 310 //      {
 311 //              _listViewPanel = theListViewPanel;
 312 //      }
 313
 314
 315
 316 void wxContourMainFrame::onCreateContourSpline( ){
 317
 318         //JCP 20-10-08 Undo redo implementation
 319         saveState();
 320         //JCP 20-10-08 Undo redo implementation
 321         createContour( 1 );
 322
 323 }
 324
 325 void wxContourMainFrame::onCreateContourRectangle( )
 326 {
 327     //JCP 20-10-08 Undo redo implementation
 328         saveState();
 329         //JCP 20-10-08 Undo redo implementation
 330         createContour( 2 );
 331 }
 332
 333 void wxContourMainFrame::onCreateContourCircle( )
 334 {
 335     //JCP 20-10-08 Undo redo implementation
 336         saveState();
 337         //JCP 20-10-08 Undo redo implementation
 338         createContour( 3 );
 339 }
 340
 341 void wxContourMainFrame::onCreateContourLine( )
 342 {
 343     //JCP 20-10-08 Undo redo implementation
 344         saveState();
 345         //JCP 20-10-08 Undo redo implementation
 346         createContour( 6 );
 347 }
 348
 349 // RaC 09-09 --------------------------------------
 350 void wxContourMainFrame::onCreateContourPoints( )
 351 {
 352     //JCP 20-10-08 Undo redo implementation
 353         saveState();
 354         //JCP 20-10-08 Undo redo implementation
 355         createContour( 7 );
 356 }
 357 // RaC 09-09 --------------------------------------
 358
 359 // RaC 10-09 --------------------------------------
 360 void wxContourMainFrame::onCreateContourPolygon( )
 361 {
 362     //JCP 20-10-08 Undo redo implementation
 363         saveState();
 364         //JCP 20-10-08 Undo redo implementation
 365         createContour( 10 );
 366 }
 367 // RaC 10-09 --------------------------------------
 368
 369 //------------------------------------------------------------------------------------------------------------
 370
 371 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 372 {
 373         //Creating the manualBaseModel and including in the model
 374         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 375
 376         std::vector<int> instantVector;
 377         _instantPanel->getInstant( instantVector );
 378         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 379
 380         /*std::vector<int> instantVector;
 381         _instantPanel->getInstant( instantVector );
 382         std::string theName;
 383         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 384         bool addedModel = theName.compare("") != 0;//??
 385
 386         if( addedModel )
 387         {
 388                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 389                 _theViewPanel->getSpacing(spc);
 390                 //Adding the manualContourControler to interface objects structure
 391                 //Adding the manualViewContour to interface objects structure
 392                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 393                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 394         }
 395 }
 396
 397 void wxContourMainFrame::createContour( int typeContour )
 398 {
 399         //Creating the manualContourModel and including in the model
 400         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 401         std::vector<int> instantVector;
 402         _instantPanel->getInstant( instantVector );
 403
 404         std::vector<int> tempVector;
 405         getInstantVector( tempVector );
 406         manModelContour->SetLabel2( std::to_string(tempVector[1]) );
 407
 408         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 409         /*std::vector<int> instantVector;
 410         _instantPanel->getInstant( instantVector );
 411         std::string theName;
 412         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 413         bool addedModel = theName.compare("") != 0;//??
 414         if( addedModel )
 415         {
 416                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 417                 _theViewPanel->getSpacing(spc);
 418                 //Adding the manualContourControler to interface objects structure
 419                 //Adding the manualViewContour to interface objects structure
 420                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 421                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 422         } // if addedModel
 423 }
 424
 425 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 426
 427         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 428         manualBaseModel *manModelContour=NULL;
 429         manModelContour = manModelContourBullEye;
 430         if (panel!=NULL){
 431                 int iCrown,sizeCrowns,iSector,sizeSectors;
 432                 double radioA,radioB,ang,angDelta ;
 433                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 434                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 435                 {
 436                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 437                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 438                         if (iCrown==sizeCrowns-1)
 439                         {
 440                                 radioA  = 0;
 441                         } else {
 442                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 443                         }
 444                         radioA=radioA/100.0;
 445                         radioB=radioB/100.0;
 446                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 447                         {
 448                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 449                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 450                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 451                         } // for iSector
 452                 } // for iCrown
 453         } // if _panelBullEyeOptions
 454
 455         return manModelContour;
 456 }
 457
 458 void wxContourMainFrame :: saveState()
 459 {
 460         std::string temp = kernelManager->saveState();
 461         saveFileWithContours(temp);
 462 }
 463
 464 void wxContourMainFrame::onDeleteContour()
 465 {
 466         //JCP 20-10-08 Undo redo implementation
 467                 saveState();
 468                 //JCP 20-10-08 Undo redo implementation
 469
 470                 std::vector<std::string> lstKeyNameToBeErase;
 471                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 472                 deleteContours( lstKeyNameToBeErase );
 473 /*JCP 19 - 11 - 08
 474                 int i,size=_sceneManager->getSelectedObjects().size();
 475                 for(i=0;i<size;i++)
 476                 {
 477                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 478                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 479                         if ( ispartofstaticlist>=0 )
 480                         {
 481                                 std::vector<int> tempVector;
 482                                 _instantPanel->getInstant( tempVector );
 483                                 Instant instant(&tempVector);
 484                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 485                         }
 486                 }
 487
 488                 std::vector<std::string> lstKeyName;
 489                 std::vector<std::string> lstKeyNameActualSlice;
 490                 std::vector<std::string> lstKeyNameToBeErase;
 491
 492                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 493                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 494                 int k,kSize=lstKeyNameToBeErase.size();
 495                 int j,jSize=lstKeyNameActualSlice.size();
 496                 bool ok;
 497                 for (k=0;k<kSize; k++)
 498                 {
 499                         ok=false;
 500                         for (j=0;j<jSize; j++)
 501                         {
 502                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 503                                 {
 504                                         ok=true;
 505                                 }
 506                         } // for j
 507                         if (ok==true)
 508                         {
 509                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 510                         } // if ok
 511                 } // for k
 512
 513                 deleteContours( lstKeyName );
 514 JCP 19 - 11 - 08*/
 515 }
 516
 517 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 518 {
 519         int i,size=keyNamesVector.size();
 520         for (i=0;i<size;i++)
 521         {
 522                 deleteContour( keyNamesVector[i] );
 523         }
 524 }
 525
 526 void wxContourMainFrame :: deleteContour( std::string theKeyName )
 527 {
 528         /*
 529         manualContourModel                      * cModel;
 530         manualViewBaseContour           * cViewer;
 531         manualContourBaseControler      * cControler;
 532
 533         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 534         cControler      = conwrapviewControl->getControler();*/
 535
 536         //JCP 21 - 11 - 2008
 537         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 538         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 539
 540         if (isedit  && ispartofstaticlst)
 541         {
 542                 _theViewPanel->removeFromScene(theKeyName);
 543
 544                 kernelManager->deleteCModel(theKeyName);
 545                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 546                 //cViewer               = conwrapviewControl->getViewer();
 547                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 548                 //cControler* conwrapviewControl->getControler();
 549         //      delete cModel;
 550         //      delete cViewer;
 551         //      delete cControler;
 552         } // if editable
 553 //JCP 21 - 11 - 08
 554 }
 555
 556 void wxContourMainFrame::onDeleteContoursActSlice()
 557 {
 558         //JCP 20-10-08 Undo redo implementation
 559         saveState();
 560         //JCP 20-10-08 Undo redo implementation
 561
 562         std::vector<int> tempVector;
 563         getInstantVector( tempVector );
 564         deleteContours( getOutlinesName( tempVector[1] ) );
 565 //      deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 566
 567 }
 568 void wxContourMainFrame::onDeleteAllContours(){
 569         //JCP 20-10-08 Undo redo implementation
 570         saveState();
 571         deleteAllContours();
 572 }
 573 void wxContourMainFrame::deleteAllContours(){
 574         //JCP 20-10-08 Undo redo implementation
 575
 576         wxBusyCursor wait;
 577         std::vector<int> tempVector;
 578         _instantPanel->getInstant( tempVector );
 579
 580 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 581 //              the values in GetStart and GetEnd will then not be initialize also.
 582 //              We use instead the values given when initializing the _deletepanel.
 583
 584         //int minZ = _mbarrangeDeleteAll->GetStart();
 585         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 586         int minZ, maxZ;
 587
 588         minZ = 0;
 589         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 590
 591 //JCP --08-09-2008
 592
 593         _theViewPanel->getSceneManager()->removeSceneContours( );
 594         _theViewPanel->getSceneManager()->removeAllOutlines();
 595         kernelManager->removeAllOutlines();
 596 //JCP --08-09-2008
 597         /*
 598         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 599         {
 600                 _theViewPanel->getSceneManager()->removeSceneContours( );
 601                 _modelManager->removeAllOutlines();
 602                 _theViewPanel->getSceneManager()->removeAllOutlines();
 603
 604         } else {
 605                 for ( z=minZ ; z<=maxZ ; z++)
 606                 {
 607                         tempVector[1]=z;
 608                         Instant instant(&tempVector);
 609                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 610
 611                         sizeLstContourThings = lstContourThings.size();
 612                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 613                         {
 614                                 ContourThing **contourthing = lstContourThings[ii];
 615                                 deleteContour( (*contourthing)->getName() );
 616                         } //for ii
 617                 }// for z
 618         } // if
 619 JCP --08-09-2008 */
 620 }
 621
 622 void wxContourMainFrame::setConceptValue( std::string name, int value )
 623 {
 624         _instantPanel->setConceptValue(name, value);
 625 }
 626
 627
 628 ConceptDataWrap* wxContourMainFrame::getLastConceptData()
 629 {
 630         return _instantPanel->getLastConceptData();
 631 }
 632
 633
 634 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
 635 {
 636         return _instantPanel->getIfConceptCheckedAt( name, pos );
 637 }
 638
 639
 640
 641 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 642 {
 643         vtkImageData * mask;
 644         vtkImageData * value;
 645         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 646
 647         std::vector<int> nTypeView;
 648         nTypeView.push_back(5);
 649         nTypeView.push_back(1);
 650         nTypeView.push_back(2);
 651         nTypeView.push_back(0);
 652
 653         if (_frameShowResultImages==NULL)
 654         {
 655 //              wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 656                 _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
 657                      wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION |  wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER  );
 658
 659                 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 660                 m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
 661
 662                 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 663                 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 664
 665                 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 666                 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 667
 668
 669                 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 670                 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 671                 m_mgr_noteBookViewerResult->Update();
 672                 _frameShowResultImages->Show();
 673         } // if _frameShowResultImages
 674 }
 675
 676
 677
 678
 679 void wxContourMainFrame::changeInstant()
 680 {
 681                 std::vector<int> instantVect;
 682                 _instantPanel->getInstant( instantVect );
 683                 int actualSlice = instantVect[1];
 684                 kernelManager->setInstant(instantVect);
 685             // Refresh Mask image
 686                 if(_viewMaskImage!=NULL)
 687                 {
 688                         _viewMaskImage->SetZ(actualSlice);
 689                         if (_viewMaskImagePanel->IsVisible()==true)
 690                         {
 691                                 vtkImageData *mask, *value;
 692                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 693                                 _viewMaskImage->onThreshold();
 694                         }
 695                 } // if _viewMaskImage
 696         // Refresh Threshold image
 697                 if(_viewThresholdImage!=NULL)
 698                 {
 699                         _viewThresholdImage->SetZ(actualSlice);
 700                         if (_viewThresholdImagePanel->IsVisible()==true)
 701                         {
 702                                 _viewThresholdImage->onThreshold();
 703                         }
 704                 } // if _viewThresholdImage
 705                 updateInstantOutlines();
 706                 updateInstantImageData();
 707                 updateInstantAxes();
 708 }
 709
 710
 711
 712 void wxContourMainFrame::updateInstantOutlines()
 713 {
 714         _theViewPanel->removeSceneContours();
 715         _theViewPanel->addNameWrapperToScene();
 716
 717         //for( int i=0; i<size; i++)
 718         //{
 719         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 720         //}
 721 }
 722
 723 int wxContourMainFrame::getNamesWrappingSize()
 724 {
 725         return kernelManager->getNamesWrappingSize();
 726 }
 727
 728 std::string wxContourMainFrame::getNameWrapping(int i)
 729 {
 730         return kernelManager->getNameWrapping(i);
 731 }
 732
 733 void wxContourMainFrame::updateInstantImageData()
 734 {
 735         std::vector<int> inst;
 736         _instantPanel->getInstant(inst);
 737
 738         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 739         if(img!=NULL)
 740         {
 741                 _theViewPanel->changeImage(img);
 742                 showAxis(false);
 743         }else{
 744                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 745                 _theViewPanel->setImageSlice(z);
 746         } // if img
 747 }
 748
 749 void wxContourMainFrame::updateInstantAxes()
 750 {
 751 }
 752
 753
 754 void wxContourMainFrame::onChangeDeep(int val){
 755         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 756         changeInstant();
 757 }
 758
 759
 760 void wxContourMainFrame::onCopy(){
 761         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 762         std::vector<int> tempVector;
 763         _instantPanel->getInstant( tempVector );
 764     _performingOperation->reset();
 765         _performingOperation->setStartCommand( COPY );
 766         _performingOperation->setStartOperationInstantVector( tempVector );
 767         _performingOperation->setKeyNamesOperationElems( currentSelection );
 768 }
 769
 770 void wxContourMainFrame::onPaste()
 771 {
 772         char theStartCommand = _performingOperation->getStartCommand();
 773         if (  theStartCommand == COPY )
 774         {
 775                 //JCP 20-10-08 Undo redo implementation
 776                 saveState();
 777                 //JCP 20-10-08 Undo redo implementation
 778                 std::vector<int> tempVector;
 779                 _instantPanel->getInstant( tempVector );
 780                 _performingOperation->setEndOperationInstantVector ( tempVector );
 781                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 782                 int i,size = elems.size();
 783                 for( i=0; i<size; i++ )
 784                 {
 785                         createCopyContourOf( elems[i], tempVector, i>0 );
 786                 }
 787         }
 788 }
 789
 790 void wxContourMainFrame::onUndo()
 791 {
 792         std::string filename;
 793         if(kernelManager->onUndoSaveFile(filename)){
 794                 saveFileWithContours(filename);
 795         }
 796         if(kernelManager->onUndo(filename)){
 797                 loadState(filename);
 798         }
 799 }
 800 void wxContourMainFrame::onRedo(){
 801         std::string filename;
 802         if(kernelManager->onRedo(filename)){
 803                 loadState(filename);
 804         }
 805
 806 }
 807 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 808 {
 809         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 810         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 811         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 812 }
 813
 814 ///AD: 03-09    Copy the object and apply the given transformation
 815 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 816 {
 817         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 818         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 819
 820         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 821         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 822
 823         double pnt1X = refPoint1->GetX();
 824         double pnt1Y = refPoint1->GetY();
 825 //      double pnt1Z = refPoint1->GetZ();
 826         double pnt2X = refPoint2->GetX();
 827         double pnt2Y = refPoint2->GetY();
 828 //      double pnt2Z = refPoint2->GetZ();
 829
 830         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 831         vtkTransform *t = vtkTransform::New();
 832
 833         t->PostMultiply();
 834         t->Identity();
 835         t->Translate(-pnt1X, -pnt1Y, 0);
 836         t->RotateZ(-angle);
 837         t->Scale(-1,1,1);
 838         t->RotateZ(angle);
 839         t->Translate(pnt1X, pnt1Y, 0);
 840         t->Update();
 841
 842         int i,size=manualModel->GetSizeLstPoints();
 843         for (i=0;i<size;i++)
 844         {
 845                 manualPoint * mp = manualModel->GetManualPoint(i);
 846                 float vecIn[3];
 847                 float vecOut[3];
 848                 vecIn[0]=mp->GetX();
 849                 vecIn[1]=mp->GetY();
 850                 vecIn[2]=mp->GetZ();
 851                 t->TransformPoint( vecIn, vecOut );
 852                 mp->SetPointX( vecOut[0] );
 853                 mp->SetPointY( vecOut[1] );
 854                 mp->SetPointZ( vecOut[2] );
 855         } // for i
 856
 857         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 858 }
 859
 860 void wxContourMainFrame ::loadState(std::string filename)
 861 {
 862         deleteAllContours();
 863         onLoadContours(filename,false);
 864 }
 865
 866 void wxContourMainFrame::onLoad()
 867 {
 868         std::string fileNameContourROI = GetFileLocation();
 869 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 870         if(GetFileLocation().empty())
 871         {
 872 //------------------------------------------------------------------------------------------------------------
 873 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 874 #if wxMAJOR_VERSION <= 2
 875                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 876 #else
 877                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
 878 #endif
 879                 if (dialog.ShowModal() == wxID_OK)
 880                 {
 881                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 882                 } // if dialog
 883         } // if FileLocation
 884         onLoadContours(fileNameContourROI,true);
 885 }
 886
 887 void  wxContourMainFrame::SetZForAllContours(int pz)
 888 {
 889         //-- Normal Contours
 890         std::vector< std::string > lstNameThings;
 891         int i,sizeLstNameThings;
 892         int ii,sizeLstPoints;
 893         lstNameThings           = kernelManager->GetLstNameThings();
 894         sizeLstNameThings       = lstNameThings.size();
 895         for (i=0 ; i<sizeLstNameThings ; i++)
 896         {
 897 printf("EED wxContourMainFrame::SetZForAllContours contour=%d \n", i );
 898                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 899                 sizeLstPoints = manualModel->GetSizeLstPoints();
 900                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 901                 {
 902                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 903                 }// for ii  list of points
 904         }// for i  list of Things
 905
 906         //-- Static Contours
 907
 908         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 909         sizeLstNameThings       = lstNameThings.size();
 910         for (i=0 ; i<sizeLstNameThings ; i++)
 911         {
 912                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 913                 sizeLstPoints = manualModel->GetSizeLstPoints();
 914                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 915                 {
 916                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 917                 }// for ii  list of points
 918         }// for i  list of static things
 919 }
 920
 921 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
 922 {
 923         char tmp[255];
 924         char tmpD[255];
 925         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 926 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 927         if(pFile != NULL)
 928         {
 929 //------------------------------------------------------------------------------------------------------------
 930         fileNameContourROI.append("data");
 931                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 932                 if(pFileData != NULL)
 933                 {
 934                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 935                         fscanf(pFileData,"%s",tmpD); // Version
 936                         fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 937
 938                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 939                         fscanf(pFileData,"%s",tmpD); // #
 940                         _onePixelSize = atof(tmpD);
 941                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 942                         fscanf(pFileData,"%s",tmpD); // #
 943                 }
 944                 fscanf(pFile,"%s",tmp); // --CreaContour--
 945                 fscanf(pFile,"%s",tmp); // Version
 946                 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 947                 std::string version(tmp);
 948                 //AD:02-06-09
 949         _tmpReadFileTypeOfTransformation=-1;
 950                 if (version=="1.0.3")
 951                 {
 952                     readDimSpc(pFile,interactiveInterface);   // DimSpc interactive ON
 953                         openContours(pFile,pFileData,false);
 954                         openContours(pFile,pFileData,true);     //Load StaticContours
 955                 }
 956                 if (version=="1.0.2")
 957                 {
 958 //EED001
 959                         readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
 960                         openContours(pFile,pFileData,false);
 961                         readDimSpc(pFile,false);                // DimSpc interactive OFF
 962                         openContours(pFile,pFileData,true);     // Load StaticContours
 963                         SetZForAllContours(-900);
 964                 } else if (version=="1.0.1") { //AD:02-06-09
 965                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 966                         openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
 967                 } else if (version=="1.0.0") { //AD:02-06-09
 968                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 969                 }
 970                 fclose(pFile);
 971                 if(pFileData != NULL)
 972                 {
 973                         fclose(pFileData);
 974                 } // if
 975         } // pFile
 976         _theViewPanel->getSceneManager()->removeSceneContours();
 977         changeInstant();
 978 }
 979
 980
 981 void wxContourMainFrame::onImport()
 982 {
 983         std::string filename, filenamecontours;
 984 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 985 #if wxMAJOR_VERSION <= 2
 986         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
 987 #else
 988         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
 989 #endif
 990         if (dialog.ShowModal() == wxID_OK)
 991         {
 992                 filename = dialog.GetPath().mb_str();
 993                 filenamecontours = kernelManager->parseOsirixFile(filename);
 994
 995                 if(filenamecontours.compare("") != 0)
 996                 {
 997                         onLoadContours(filenamecontours,true);
 998                 } // if
 999         } // if
1000 }
1001
1002 void wxContourMainFrame::onTest()
1003 {
1004         std::string filename, filenamecontours;
1005 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1006 #if wxMAJOR_VERSION <= 2
1007         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1008 #else
1009         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
1010 #endif
1011         if (dialog.ShowModal() == wxID_OK)
1012         {
1013                 filename = dialog.GetPath().mb_str();
1014                 std::cout << "This is the filename: " << filename << std::endl;
1015         } // if
1016 }
1017
1018 //AD: 29-05-09
1019 void wxContourMainFrame::onSave()
1020 {
1021 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1022         if(GetFileLocation().empty())
1023         {
1024 //------------------------------------------------------------------------------------------------------------
1025 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1026 #if wxMAJOR_VERSION <= 2
1027                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1028 #else
1029                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
1030 #endif
1031                 if (dialog.ShowModal() == wxID_OK)
1032                 {
1033                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1034                         kernelManager->setCurrentFileName(fileNameContourROI);
1035                         saveFileWithContours( fileNameContourROI );
1036                 }
1037         } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
1038                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1039                 std::string fileNameContourROI = GetFileLocation();
1040                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1041                 kernelManager->setCurrentFileName(fileNameContourROI);
1042                 saveFileWithContours( fileNameContourROI);
1043         }
1044 //------------------------------------------------------------------------------------------------------------
1045 }
1046
1047 //AD: 29-05-09
1048 void wxContourMainFrame::saveFileWithContours( std::string filename )
1049 {
1050
1051         FILE *pFile=fopen(filename.c_str(),"w+");
1052
1053 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1054         filename.append("data");
1055         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1056         FILE *pFileData=fopen(filename.c_str(),"w+");
1057 //------------------------------------------------------------------------------------------------------------
1058
1059         std::vector< std::string > lstNameThings;
1060         int i,sizeLstNameThings;
1061
1062         fprintf(pFile,"--CreaContour--\n");
1063         fprintf(pFile,"Version %s\n", "1.0.3" );
1064
1065 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1066         fprintf(pFileData,"--CreaContour--\n");
1067         fprintf(pFileData,"Version %s\n", "1.0.3" );
1068         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1069
1070 //------------------------------------------------------------------------------------------------------------
1071
1072         vtkImageData *image = _images[0];
1073
1074         int dimRange[3];
1075         image->GetDimensions(dimRange);
1076
1077         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1078
1079         double spaRange[3];
1080         image->GetSpacing(spaRange);
1081
1082         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1083
1084         // Normal Contours
1085
1086         lstNameThings           = kernelManager->GetLstNameThings();
1087         sizeLstNameThings       = lstNameThings.size();
1088         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1089
1090 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1091         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1092 //------------------------------------------------------------------------------------------------------------
1093
1094
1095 // EED 2017-05-30
1096         double spc[3];
1097         spc[0]=1;
1098         spc[1]=1;
1099         spc[2]=1;
1100
1101         for (i=0 ; i<sizeLstNameThings ; i++)
1102         {
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1105
1106 // EED 2017-05-30
1107 //              double sizeInPixel = manualModel ->GetPathSize(  );
1108                 double sizeInPixel = manualModel ->GetPathSize( spc );
1109
1110                 double realContourSize = sizeInPixel*_onePixelSize;
1111                 manualModel ->SetRealSize(realContourSize);
1112 //------------------------------------------------------------------------------------------------------------
1113
1114         //int size= kernelManager->GetLstNameThings().size();
1115
1116                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1117                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1118         }// for i
1119
1120         //-- Static Contours
1121
1122 //      fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1123 //      fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1124
1125         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1126         sizeLstNameThings       = lstNameThings.size();
1127         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1128
1129 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1130         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1131 //------------------------------------------------------------------------------------------------------------
1132
1133         for (i=0 ; i<sizeLstNameThings ; i++)
1134         {
1135                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1136                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1137         }// for i
1138         fclose(pFile);
1139         fclose(pFileData);
1140 }
1141
1142
1143 //EED02
1144 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1145 {
1146         char tmp[255];
1147         int             imageDim[3];
1148         double          imageSpac[3];
1149         vtkImageData    *image          = _images[0];
1150     image->GetDimensions(imageDim);
1151     image->GetSpacing(imageSpac);
1152
1153     fscanf(pFile,"%s",tmp); // ImageDimensions
1154     fscanf(pFile,"%s",tmp); // X
1155     _tmpReadFileImageDim[0] = atoi(tmp);
1156     fscanf(pFile,"%s",tmp); // Y
1157     _tmpReadFileImageDim[1] = atoi(tmp);
1158     fscanf(pFile,"%s",tmp); // Z
1159     _tmpReadFileImageDim[2] = atoi(tmp);
1160
1161     fscanf(pFile,"%s",tmp); // ImageSpacing
1162     fscanf(pFile,"%s",tmp); // X
1163     _tmpReadFileImageSpac[0] = atof(tmp);
1164     fscanf(pFile,"%s",tmp); // Y
1165     _tmpReadFileImageSpac[1] = atof(tmp);
1166     fscanf(pFile,"%s",tmp); // Z
1167     _tmpReadFileImageSpac[2] = atof(tmp);
1168
1169
1170         if (interactiveOption==true)
1171     {
1172                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1173                 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1174                 {
1175                         wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
1176                         wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1177 //                      wxBoxSizer              *dialSizer = new wxBoxSizer(wxVERTICAL);
1178                         wxFlexGridSizer *dialSizer = new wxFlexGridSizer(1);
1179
1180                         wxString lstOptOperation[2];
1181                         lstOptOperation[0]=_T("By Dimension");
1182                         lstOptOperation[1]=_T("By Spacing");
1183                         wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,90), 2 , lstOptOperation,  2, wxRA_SPECIFY_COLS);
1184
1185                         dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1186                         dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1187                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1188                         dialSizer->Add(radioOpts,0,wxGROW);
1189                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1190                         dialSizer->Add(buttonsSizer,0,wxGROW);
1191                         dial->SetSizer(dialSizer, true);
1192                         dial->Layout();
1193                         dial->ShowModal();
1194
1195                         int _tmpReadFileTypeOfTransformation = -1;
1196 //EED                   bool transform = false;
1197
1198                         if (dial->GetReturnCode() == wxID_OK)
1199                         {
1200                                 _tmpReadFileTypeOfTransformation    = radioOpts->GetSelection();
1201                         }// if wxOK
1202
1203                 } // if dim spc
1204     } // if interactiveOption
1205 }
1206
1207
1208
1209
1210 //AD:04-06-09
1211 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1212 {
1213
1214         char tmp[255];
1215
1216         vtkImageData    *image = _images[0];
1217
1218         int             imageDim[3];
1219         double          imageSpac[3];
1220     image->GetDimensions(imageDim);
1221     image->GetSpacing(imageSpac);
1222
1223
1224         fscanf(pFile,"%s",tmp); // NumberOfContours
1225         fscanf(pFile,"%s",tmp); // ##
1226         int numberOfContours = atoi(tmp);
1227
1228         std::vector<int> instantVector;
1229         int typeContourModel;
1230         manualBaseModel *manModelContour;
1231         int typeView;
1232
1233 /*
1234         if (compatible==true)
1235         {
1236                 int i;
1237                 for (i=0;i<numberOfContours;i++)
1238                 {
1239                         instantVector.clear();
1240                         fscanf(pFile,"%s",tmp); // Instant
1241
1242                         fscanf(pFile,"%s",tmp); // 1
1243                         instantVector.push_back( atoi(tmp) );
1244                         fscanf(pFile,"%s",tmp); // 2
1245                         instantVector.push_back( atoi(tmp) );
1246                         fscanf(pFile,"%s",tmp); // 3
1247                         instantVector.push_back( atoi(tmp) );
1248                         fscanf(pFile,"%s",tmp); // 4
1249                         instantVector.push_back( atoi(tmp) );
1250                         fscanf(pFile,"%s",tmp); // 5
1251                         instantVector.push_back( atoi(tmp) );
1252                         fscanf(pFile,"%s",tmp); // 6
1253                         instantVector.push_back( atoi(tmp) );
1254
1255
1256                         fscanf(pFile,"%s",tmp); // TypeContourModel
1257                         fscanf(pFile,"%s",tmp); // ##
1258                         typeContourModel = atoi(tmp);
1259
1260                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1261                         manModelContour->Open(pFile);
1262                         if(pFileData != NULL)
1263                         {
1264                                 manModelContour->OpenData(pFileData);
1265                         }
1266
1267                         fscanf(pFile,"%s",tmp); // TypeView
1268                         fscanf(pFile,"%s",tmp); // ##
1269                         typeView = atoi(tmp);
1270
1271                         std::string theName;
1272                         theName = kernelManager->createOutline( manModelContour, instantVector );
1273                         bool addedModel = theName.compare("") != 0;
1274                         if( addedModel )
1275                         {
1276                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1277                                 _theViewPanel->getSpacing(spc);
1278                                 //Adding the manualContourControler to interface objects structure
1279                                 //Adding the manualViewContour to interface objects structure
1280                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1281                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1282                         }
1283
1284                         if (staticContour) //StaticContours (will appear in all slices)
1285                         {
1286                                 Instant instant(&instantVector);
1287                                 kernelManager->changeContourOfManager( theName , &instant );
1288                         }
1289
1290                 }// for  numberOfContours
1291         }
1292
1293         else if (compatible==false)
1294         {
1295 */
1296
1297                 int i;
1298                 for (i=0;i<numberOfContours;i++)
1299                 {
1300                         instantVector.clear();
1301                         fscanf(pFile,"%s",tmp); // Instant
1302
1303                         fscanf(pFile,"%s",tmp); // 1
1304                         instantVector.push_back( atoi(tmp) );
1305                         fscanf(pFile,"%s",tmp); // 2
1306                         instantVector.push_back( atoi(tmp) );
1307                         fscanf(pFile,"%s",tmp); // 3
1308                         instantVector.push_back( atoi(tmp) );
1309                         fscanf(pFile,"%s",tmp); // 4
1310                         instantVector.push_back( atoi(tmp) );
1311                         fscanf(pFile,"%s",tmp); // 5
1312                         instantVector.push_back( atoi(tmp) );
1313                         fscanf(pFile,"%s",tmp); // 6
1314                         instantVector.push_back( atoi(tmp) );
1315
1316                         fscanf(pFile,"%s",tmp); // TypeContourModel
1317                         fscanf(pFile,"%s",tmp); // ##
1318                         typeContourModel = atoi(tmp);
1319
1320                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1321                         manModelContour->Open(pFile);
1322                         if(pFileData != NULL)
1323                         {
1324                                 manModelContour->OpenData(pFileData);
1325                         }
1326
1327             if (_tmpReadFileTypeOfTransformation==-1){
1328                 //nothing to do..
1329             } else if (_tmpReadFileTypeOfTransformation==0){
1330                 double transX, transY;
1331                 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];
1332                 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];
1333                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1334             } else if (_tmpReadFileTypeOfTransformation==1) {
1335                 double transX, transY;
1336                 transX = (double) _tmpReadFileImageSpac[0]/imageDim[0];
1337                 transY = (double) _tmpReadFileImageSpac[1]/imageDim[1];
1338                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1339             }
1340
1341                         fscanf(pFile,"%s",tmp); // TypeView
1342                         fscanf(pFile,"%s",tmp); // ##
1343                         typeView = atoi(tmp);
1344
1345                         std::string theName;
1346                         theName = kernelManager->createOutline( manModelContour, instantVector );
1347                         bool addedModel = theName.compare("") != 0;
1348                         if( addedModel )
1349                         {
1350                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1351                                 _theViewPanel->getSpacing(spc);
1352                                 //Adding the manualContourControler to interface objects structure
1353                                 //Adding the manualViewContour to interface objects structure
1354                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1355                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1356                         }
1357
1358                         if (staticContour) //StaticContours (will appear in all slices)
1359                         {
1360                                 Instant instant(&instantVector);
1361                                 kernelManager->changeContourOfManager( theName , &instant );
1362                         }
1363                 }// for  numberOfContours
1364
1365 /*      }    */
1366
1367 }
1368
1369 void wxContourMainFrame::RefreshInterface()
1370 {
1371         changeInstant();
1372         _theViewPanel->RefreshInterface();
1373         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1374         //wxvtk2dbaseview->Refresh();
1375 }
1376
1377 vtkImageData* wxContourMainFrame::getImageData()
1378 {
1379         return _theViewPanel->getImageData();
1380 }
1381
1382 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1383 {
1384         //JCP 20-10-08 Undo redo implementation
1385         saveState();
1386         //JCP 20-10-08 Undo redo implementation
1387
1388         wxBusyCursor wait;
1389         int                                     x                                       = _theViewPanel->GetX();
1390         int                                     y                                       = _theViewPanel->GetY();
1391         int                                     z                                       = _theViewPanel->GetZ();
1392         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1393         RefreshInterface();
1394 }
1395
1396 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1397 {
1398         int typeofcontour = 1;
1399         //Image Data
1400         vtkImageData    *imagedata      = getImageData();
1401
1402         //Tipo de pixeles a utilizar internamente en ITK
1403         typedef   float  InternalPixelType;
1404         const     unsigned int    Dimension = 2;
1405         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1406
1407         //Tipo de pixeles de salida 1
1408         typedef unsigned char OutputPixelType;
1409         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1410
1411         //Tipo de pixeles de salida 2
1412         typedef unsigned short OutputPixelType2;
1413         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1414
1415         //DefiniciÛn del thresholder
1416         typedef itk::BinaryThresholdImageFilter<
1417                                                         InternalImageType,
1418                                                         OutputImageType    >    ThresholdingFilterType;
1419
1420         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1421         typedef itk::CastImageFilter<
1422                                 OutputImageType, OutputImageType2 >  CastFilterType;
1423
1424         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1425         typedef itk::CastImageFilter<
1426                                 OutputImageType2, InternalImageType >  CastFilterType2;
1427
1428         //Tercer tipo de conversiÛn
1429         typedef itk::RescaleIntensityImageFilter<
1430                                                                 InternalImageType,
1431                                                                 OutputImageType >   CastFilterType3;
1432
1433         //Cuarto tipo de conversiÛn
1434         typedef itk::RescaleIntensityImageFilter<
1435                                                                 OutputImageType,
1436                                                                 OutputImageType >   CastFilterType4;
1437
1438         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1439
1440         thresholder->SetLowerThreshold( 0.0 );
1441         thresholder->SetUpperThreshold( 128 );
1442
1443         thresholder->SetOutsideValue(  255  );
1444         thresholder->SetInsideValue(  0 );
1445
1446         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1447         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1448         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1449 //EED10JUIN2011 typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1450
1451         ConnectorType::Pointer connector= ConnectorType::New();
1452         ConnectorType2::Pointer connector2= ConnectorType2::New();
1453
1454
1455         CastFilterType::Pointer filter=CastFilterType::New();
1456         CastFilterType2::Pointer filter2=CastFilterType2::New();
1457
1458         connector->SetInput( imagedata );
1459         filter2->SetInput(connector->GetOutput());
1460
1461         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1462                                                                 InternalImageType,
1463                                                                 InternalImageType >  SmoothingFilterType;
1464
1465         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1466
1467         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1468                                                                 InternalImageType,
1469                                                                 InternalImageType >  GradientFilterType;
1470
1471         typedef   itk::SigmoidImageFilter<
1472                                                                 InternalImageType,
1473                                                                 InternalImageType >  SigmoidFilterType;
1474
1475         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1476
1477         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1478
1479         sigmoid->SetOutputMinimum(  0.0  );
1480         sigmoid->SetOutputMaximum(  255.0  );
1481
1482
1483         typedef  itk::FastMarchingImageFilter<
1484                                                                 InternalImageType,
1485                                                                 InternalImageType >    FastMarchingFilterType;
1486
1487
1488         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1489
1490 printf("EED wxContourMainFrame::SegmentationOneSliceITK  Skypping this code.  Not compiling   GeodesicActiveContourLevelSetImageFilter     in fedora 17 with ITK 3.20.1 \n ");
1491 /*EED 17 sept 2010
1492  > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - > -   Not compiling   GeodesicActiveContourLevelSetImageFilter     in fedora 17 with ITK 3.20.1
1493
1494
1495         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1496                                         InternalImageType >    GeodesicActiveContourFilterType;
1497         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1498                                                                                 GeodesicActiveContourFilterType::New();
1499
1500         typedef  itk::ZeroCrossingImageFilter<
1501                                                                 InternalImageType,
1502                                                                 InternalImageType >    ZeroCrossingFilterType;
1503         ZeroCrossingFilterType::Pointer zeroCrossing =
1504                                                         ZeroCrossingFilterType::New();
1505
1506         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1507
1508         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1509         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1510         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1511
1512         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1513         int it=atoi(  crea::wx2std(iter).c_str() );
1514         geodesicActiveContour->SetNumberOfIterations( it );
1515
1516         smoothing->SetInput( filter2->GetOutput() );
1517         gradientMagnitude->SetInput( smoothing->GetOutput() );
1518         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1519         fastMarching->SetInput( sigmoid->GetOutput() );
1520         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1521         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1522
1523         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1524         //thresholder->SetInput( zeroCrossing->GetOutput() );
1525         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1526         connector2->SetInput( thresholder->GetOutput()  );
1527
1528 < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < -
1529 */
1530
1531
1532
1533
1534         smoothing->SetTimeStep( 0.125 );
1535         smoothing->SetNumberOfIterations(  5 );
1536         smoothing->SetConductanceParameter( 9.0 );
1537
1538
1539         const double sigma = atof(  crea::wx2std(sigm).c_str() );
1540         gradientMagnitude->SetSigma(  sigma  );
1541
1542         const double alpha =  atof(  crea::wx2std(alf).c_str() );
1543         const double beta  =  atof(  crea::wx2std(bet).c_str() );
1544
1545         sigmoid->SetAlpha( alpha );
1546         sigmoid->SetBeta(  beta  );
1547
1548         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1549         typedef FastMarchingFilterType::NodeType       NodeType;
1550
1551         NodeContainer::Pointer seeds = NodeContainer::New();
1552
1553         InternalImageType::IndexType  seedPosition;
1554         seedPosition[0] = x;
1555         seedPosition[1] = y;
1556
1557         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1558
1559         NodeType node;
1560
1561         const double seedValue = - initialDistance;
1562
1563         node.SetValue( seedValue );
1564         node.SetIndex( seedPosition );
1565
1566         seeds->Initialize();
1567         seeds->InsertElement( 0, node );
1568
1569         fastMarching->SetTrialPoints( seeds );
1570
1571         fastMarching->SetSpeedConstant( 1.0 );
1572
1573         fastMarching->SetOutputSize(
1574                         connector->GetOutput()->GetBufferedRegion().GetSize() );
1575
1576         fastMarching->SetStoppingValue( 800 );
1577         try
1578     {
1579
1580         connector2->Update();
1581         vtkImageData *idata = connector2->GetOutput();
1582
1583         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1584
1585         cntVTK->SetNumberOfContours( 1 );
1586         cntVTK->SetValue( 0, 255 );
1587 //EED 2017-01-01 Migration VTK7
1588 #if VTK_MAJOR_VERSION <= 5
1589         cntVTK->SetInput( idata );
1590         cntVTK->Update( );
1591         cntVTK->UpdateInformation();
1592 #else
1593         cntVTK->SetInputData( idata );
1594 #endif
1595
1596         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1597
1598 //EED 2017-01-01 Migration VTK7
1599 #if VTK_MAJOR_VERSION <= 5
1600         cpd->SetInput( cntVTK->GetOutput( ) );
1601         cpd->Update( );
1602         cpd->UpdateInformation();
1603 #else
1604         cpd->SetInputData( cntVTK->GetOutput( ) );
1605 #endif
1606
1607
1608         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1609         conn->SetExtractionModeToLargestRegion( );
1610 //EED 2017-01-01 Migration VTK7
1611 #if VTK_MAJOR_VERSION <= 5
1612         conn->SetInput( cpd->GetOutput( ) );
1613         conn->Update( );
1614         conn->UpdateInformation();
1615 #else
1616         conn->SetInputData( cpd->GetOutput( ) );
1617 #endif
1618
1619
1620         vtkStripper* vtkstripper = vtkStripper::New( );
1621
1622 //EED 2017-01-01 Migration VTK7
1623 #if VTK_MAJOR_VERSION <= 5
1624         vtkstripper->SetInput( conn->GetOutput() );
1625         vtkstripper->Update();
1626         vtkstripper->UpdateInformation();
1627 #else
1628         vtkstripper->SetInputData( conn->GetOutput() );
1629         cntVTK->Update();
1630 #endif
1631
1632         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1633         //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1634
1635 //EED 2017-01-01 Migration VTK7
1636 #if VTK_MAJOR_VERSION <= 5
1637         polyDataResult->Update( );
1638         polyDataResult->UpdateInformation();
1639 #else
1640         // ..
1641 #endif
1642
1643         //EED
1644                 /*
1645         ofstream myfile;
1646         myfile.open ("C:/Creatis/example.txt");
1647         myfile << "\n";
1648         polyDataResult->Print(myfile);
1649         myfile << "-------------------------------------\n";
1650         polyDataResult->GetLines()->Print(myfile);
1651         myfile.close();*/
1652
1653         cntVTK          -> Delete();
1654         cpd                     -> Delete();
1655         conn            -> Delete();
1656
1657
1658         //--Calculating control points
1659
1660         std::vector<double> vecX;
1661         std::vector<double> vecY;
1662         std::vector<double> vecXo;
1663         std::vector<double> vecYo;
1664         std::vector<double>::iterator vecXoi;
1665         std::vector<double>::iterator vecYoi;
1666         std::vector<double> vecZ;
1667
1668         std::vector<double> vecCtrlPointX;
1669         std::vector<double> vecCtrlPointY;
1670         std::vector<double> vecCtrlPointZ;
1671
1672
1673         double *p;
1674         double xAct=0;
1675         double yAct=0;
1676         int ii,size=polyDataResult->GetNumberOfPoints();
1677         ofstream myfile;
1678         myfile.open ("C:/Creatis/example2.txt");
1679
1680         size=polyDataResult->GetNumberOfPoints();
1681         for (ii=0;ii<size;ii++)
1682         {
1683                 if(ii==0)
1684                 {
1685                         xAct=x;
1686                         yAct=y;
1687                 }
1688                 p       = polyDataResult->GetPoint(ii);
1689                 double x=p[0];
1690                 double y=p[1];
1691                 /*if(fabs(yAct-y)>20)
1692                 {
1693                         if((xAct-x)>1 || (xAct-x)<-1)
1694                         {
1695                         vecX.push_back( p[0] );
1696                         vecY.push_back( p[1] );
1697                         myfile <<p[0]<<","<<p[1]<<"\n";
1698                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1699                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1700                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1701                         vecZ.push_back( 900 );
1702                         xAct=x;
1703                         yAct=y;
1704                         }
1705                         else
1706                         {
1707                                 vecXo.push_back(p[0]);
1708                                 vecYo.push_back(p[1]);
1709                         }
1710
1711                 }
1712                 else*/ if(fabs(xAct-x)>11)
1713                 {
1714                         vecXo.push_back(p[0]);
1715                         vecYo.push_back(p[1]);
1716                 } else {
1717                         vecX.push_back( p[0] );
1718                         myfile <<p[0]<<","<<p[1]<<"\n";
1719                         //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1720                         //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1721                         //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1722                         vecY.push_back( p[1] );
1723 //EED 2017-12-16
1724                         vecZ.push_back( -900 );
1725                         xAct = x;
1726                         yAct = y;
1727                 } // if xAct
1728
1729
1730         }
1731
1732         while(!vecXo.empty())
1733         {
1734                 vecX.push_back(vecXo.back());
1735                 //std::cout<<" x Siguiente "<<vecXo.back();
1736                 vecXo.pop_back();
1737 //EED 2017-12-16
1738                 vecZ.push_back( -900 );
1739         }
1740         while(!vecYo.empty())
1741         {
1742                 vecY.push_back(vecYo.back());
1743                         vecYo.pop_back();
1744         }
1745         myfile.close();
1746
1747         /*for(int l=0;l<vecX.size();l++)
1748         {
1749                 if(l==0)
1750                 {
1751             vecXo.push_back(p[0]);
1752                         vecYo.push_back(p[1]);
1753                 }
1754                 else
1755                 {
1756                         if(vecXoi[l-1]==)
1757                         {
1758                         }
1759                 }
1760
1761         }*/
1762
1763         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1764
1765         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1766
1767         int method=2;
1768         if (method==0){
1769                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1770         }
1771         else if (method==1){
1772                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1773         }
1774         else if (method==2){
1775                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1776                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1777         }
1778         //--Adding contour to the system
1779
1780         std::vector<int> actualInstantVector;
1781         _instantPanel->getInstant( actualInstantVector );
1782         actualInstantVector[1]=z;
1783
1784         int j,sizeCtrPt = vecCtrlPointX.size();
1785
1786         manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1787         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1788         if (sizeCtrPt>=3){
1789                 for (j=0 ; j<sizeCtrPt ; j++)
1790                 {
1791                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1792                 } // for
1793                 std::string theName;
1794                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1795                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1796                 bool addedModel = theName.compare("") != 0;
1797                 if( addedModel )
1798                 {
1799                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1800                         _theViewPanel->getSpacing(spc);
1801                         //Adding the manualContourControler to interface objects structure
1802                         //Adding the manualViewContour to interface objects structure
1803                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1804                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1805                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1806                 }       // if addedModel
1807         } // if sizeCtrPt
1808
1809
1810 /*
1811 //EED10JUIN2011
1812                  WriterType::Pointer writer = WriterType::New();
1813          CastFilterType3::Pointer caster = CastFilterType3::New();
1814
1815                  caster->SetInput( gradientMagnitude->GetOutput() );
1816                  writer->SetInput( caster->GetOutput() );
1817                  writer->SetFileName("Gradient Magnitude.png");
1818                  caster->SetOutputMinimum(   0 );
1819                  caster->SetOutputMaximum( 255 );
1820                  writer->Update();
1821
1822                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1823                  WriterType::Pointer writer2 = WriterType::New();
1824
1825                  caster2->SetInput( sigmoid->GetOutput() );
1826                  writer2->SetInput( caster2->GetOutput() );
1827                  writer2->SetFileName("Sigmoid.png");
1828                  caster2->SetOutputMinimum(   0 );
1829                  caster2->SetOutputMaximum( 255 );
1830                  writer2->Update();
1831
1832                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1833                  WriterType::Pointer writer3 = WriterType::New();
1834
1835                  caster3->SetInput( fastMarching->GetOutput() );
1836                  writer3->SetInput( caster3->GetOutput() );
1837                  writer3->SetFileName("FastMarching.bmp");
1838                  caster3->SetOutputMinimum(   0 );
1839                  caster3->SetOutputMaximum( 255 );
1840                  writer3->Update();
1841
1842                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1843                  WriterType::Pointer writer4 = WriterType::New();
1844
1845                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1846                  writer4->SetInput( caster4->GetOutput() );
1847                  writer4->SetFileName("GeodesicActiveContour.png");
1848                  caster4->SetOutputMinimum(   0 );
1849                  caster4->SetOutputMaximum( 255 );
1850                  writer4->Update();
1851
1852                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1853                  WriterType::Pointer writer5 = WriterType::New();
1854
1855                  caster5->SetInput( zeroCrossing->GetOutput() );
1856                  writer5->SetInput( caster5->GetOutput() );
1857                  writer5->SetFileName("ZeroCrossing.bmp");
1858                  caster5->SetOutputMinimum(   0 );
1859                  caster5->SetOutputMaximum( 255 );
1860                  writer5->Update();
1861 */
1862     }
1863   catch( itk::ExceptionObject & excep )
1864     {
1865     std::cerr << "Exception caught !" << std::endl;
1866     std::cerr << excep << std::endl;
1867     }
1868 }
1869
1870 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1871
1872         //JCP 20-10-08 Undo redo implementation
1873         saveState();
1874         //JCP 20-10-08 Undo redo implementation
1875
1876         wxBusyCursor wait;
1877         int                                     x                                       = _theViewPanel->GetX();
1878         int                                     y                                       = _theViewPanel->GetY();
1879         int                                     z                                       = _theViewPanel->GetZ();
1880         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1881         RefreshInterface();
1882 }
1883
1884
1885 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1886 {
1887
1888 printf("EED wxContourMainFrame::SegmentationOneSlice Start=%d  %d\n",sampling,method );
1889 printf("EED wxContourMainFrame::SegmentationOneSlice %d %d %d  \n",x,y,z );
1890
1891         int typeofcontour = 1;
1892         //--Extracting Contour
1893         vtkImageData    *imagedata      = getImageData();
1894
1895         vtkImageReslice *imageReslice = vtkImageReslice::New();
1896 //EED
1897                 double spc[3];
1898                 imagedata->GetSpacing(spc);
1899                 x = x*spc[0];
1900                 y = y*spc[1];
1901                 z = z;
1902
1903 //EED 2017-01-01 Migration VTK7
1904 #if VTK_MAJOR_VERSION <= 5
1905         imageReslice->SetInput( imagedata );
1906 #else
1907         imageReslice->SetInputData( imagedata );
1908 #endif
1909         imageReslice->SetInformationInput(imagedata);
1910         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1911         imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
1912         imageReslice->SetOutputDimensionality(2);
1913         imageReslice->SetInterpolationModeToLinear();
1914
1915 //EED 2017-01-01 Migration VTK7
1916 #if VTK_MAJOR_VERSION <= 5
1917         // ..
1918 #else
1919         imageReslice->Update();
1920 #endif
1921
1922         imagedata = imageReslice->GetOutput();
1923 //EED 2017-01-01 Migration VTK7
1924 #if VTK_MAJOR_VERSION <= 5
1925         imagedata->Update();
1926         imagedata->UpdateInformation();
1927 #else
1928         // ..
1929 #endif
1930
1931         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1932 //EED 2017-01-01 Migration VTK7
1933 #if VTK_MAJOR_VERSION <= 5
1934         cntVTK->SetInput( imagedata );
1935 #else
1936         cntVTK->SetInputData( imagedata );
1937 #endif
1938
1939         cntVTK->SetNumberOfContours( 1 );
1940         //cntVTK->SetValue( 0, vmin );
1941 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1942         cntVTK->SetValue( 1, isovalue );
1943 //      cntVTK->SetValue( 1, vmax );
1944         cntVTK->Update( );
1945         cntVTK->UpdateInformation();
1946
1947         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1948 //EED 2017-01-01 Migration VTK7
1949 #if VTK_MAJOR_VERSION <= 5
1950         cpd->SetInput( cntVTK->GetOutput( ) );
1951 #else
1952         cpd->SetInputData( cntVTK->GetOutput( ) );
1953 #endif
1954         cpd->ConvertLinesToPointsOff( );
1955         cpd->Update( );
1956         cpd->UpdateInformation();
1957
1958         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1959
1960 //      conn->SetExtractionModeToPointSeededRegions();
1961 //      conn->SetExtractionModeToCellSeededRegions();
1962 //      conn->SetExtractionModeToSpecifiedRegions();
1963 //      conn->SetExtractionModeToLargestRegion();
1964 //      conn->SetExtractionModeToAllRegions();
1965
1966         conn->SetExtractionModeToClosestPointRegion();
1967
1968         //conn->SetMaxRecursionDepth( 3000 );
1969
1970 //EED 2017-01-01 Migration VTK7
1971 #if VTK_MAJOR_VERSION <= 5
1972         conn->SetInput( cpd->GetOutput( ) );
1973 #else
1974         conn->SetInputData( cpd->GetOutput( ) );
1975 #endif
1976
1977         conn->SetClosestPoint( x, y, 0 );
1978         conn->Update( );
1979         conn->UpdateInformation();
1980
1981         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1982 //EED 2017-01-01 Migration VTK7
1983 #if VTK_MAJOR_VERSION <= 5
1984         cpd2->SetInput( conn->GetOutput( ) );
1985 #else
1986         cpd2->SetInputData( conn->GetOutput( ) );
1987 #endif
1988         cpd2->Update();
1989         cpd2->UpdateInformation();
1990
1991         vtkStripper* vtkstripper = vtkStripper::New( );
1992 vtkstripper->SetJoinContiguousSegments(true);
1993         vtkstripper->SetMaximumLength(20000);
1994 //EED 2017-01-01 Migration VTK7
1995 #if VTK_MAJOR_VERSION <= 5
1996         vtkstripper->SetInput( cpd2->GetOutput() );
1997 #else
1998         vtkstripper->SetInputData( cpd2->GetOutput() );
1999 //      vtkstripper->SetInputData( cntVTK->GetOutput() );
2000
2001 #endif
2002         vtkstripper->Update();
2003         vtkstripper->UpdateInformation();
2004
2005
2006         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
2007
2008 //EED 2017-01-01 Migration VTK7
2009 #if VTK_MAJOR_VERSION <= 5
2010         polyDataResult->Update( );
2011         polyDataResult->UpdateInformation();
2012 #else
2013         //...
2014 #endif
2015
2016 /* EED
2017 ofstream myfile;
2018 myfile.open ("c:/temp/example.txt");
2019 myfile << "\n";
2020 polyDataResult->Print(myfile);
2021 myfile << "-------------------------------------\n";
2022 polyDataResult->GetLines()->Print(myfile);
2023 myfile.close();
2024 */
2025         cntVTK  -> Delete();
2026         cpd2    -> Delete();
2027         cpd             -> Delete();
2028         conn    -> Delete();
2029
2030 //--Calculating control points
2031         std::vector<double> vecX;
2032         std::vector<double> vecY;
2033         std::vector<double> vecZ;
2034         std::vector<double> vecCtrlPointX;
2035         std::vector<double> vecCtrlPointY;
2036         std::vector<double> vecCtrlPointZ;
2037
2038 printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
2039
2040 int numberOfPointsInCell;
2041 int numberOfcells=polyDataResult->GetNumberOfCells();
2042 for (int jj=0; jj<numberOfcells ; jj++)
2043 {
2044         vtkCell* vtkcell = polyDataResult->GetCell( jj );
2045         numberOfPointsInCell=vtkcell->GetNumberOfPoints();
2046         printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d  points=%d \n",jj,numberOfPointsInCell );
2047 }// for jj
2048
2049 printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
2050
2051 polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
2052
2053
2054         if (polyDataResult->GetNumberOfCells()>0)
2055         {
2056                 double *p;
2057         printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
2058                 vtkCell* vtkcell = polyDataResult->GetCell( 0 );
2059         printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
2060         //      int ii,size=polyDataResult->GetNumberOfPoints();
2061                 int ii,size=vtkcell->GetNumberOfPoints();
2062         printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
2063                 int id;
2064                 for (ii=0;ii<size;ii++)
2065                 {
2066         //              id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
2067         //              p       = polyDataResult->GetPoint(id);
2068                         p       = vtkcell->GetPoints()->GetPoint(ii);
2069
2070         printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d  px=%f py=%f\n",ii,id, p[0],p[1]);
2071         //              double x=p[0];
2072         //              double y=p[1];
2073                         vecX.push_back( p[0] );
2074                         vecY.push_back( p[1] );
2075         //EED 2017-12-16
2076                         vecZ.push_back( -900 );
2077         //                      vecZ.push_back( p[2] );
2078                 }
2079
2080                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
2081                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
2082
2083         //PROOFS
2084                 /*if (methodRadiobox->GetSelection()==0){
2085                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2086                 }
2087                 if (methodRadiobox->GetSelection()==1){
2088                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2089                 }
2090                 if (methodRadiobox->GetSelection()==2){
2091                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
2092                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2093                 }*/
2094
2095                 if (method==0)
2096                 {
2097                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2098                 } else if (method==1){
2099                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2100                 } else if (method==2){
2101                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
2102                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2103                 }
2104
2105                 //--Adding contour to the system
2106                 std::vector<int> actualInstantVector;
2107                 _instantPanel->getInstant( actualInstantVector );
2108                 actualInstantVector[1]=z;
2109
2110                 int j,sizeCtrPt = vecCtrlPointX.size();
2111                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
2112                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
2113                 manModelContour->SetLabel2( std::to_string(z) );
2114                 if (sizeCtrPt>=3)
2115                 {
2116                         for (j=0 ; j<sizeCtrPt ; j++)
2117                         {
2118                                 manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
2119                         } // for
2120                         std::string theName;
2121                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
2122                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
2123                         bool addedModel = theName.compare("") != 0;
2124                         if( addedModel )
2125                         {
2126                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2127                                 _theViewPanel->getSpacing(spc);
2128                                 //Adding the manualContourControler to interface objects structure
2129                                 //Adding the manualViewContour to interface objects structure
2130                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2131                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
2132                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
2133                         }       // if addedModel
2134                 } // if sizeCtrPt
2135         } // if NumberOfCells > 0
2136
2137 printf("EED wxContourMainFrame::SegmentationOneSlice  End\n");
2138 }
2139
2140 int wxContourMainFrame::GetImageDataSizeZ()
2141 {
2142         return _theViewPanel->GetImageDataSizeZ();
2143 }
2144
2145 void wxContourMainFrame::GetImageDataRange(double *range)
2146 {
2147         _theViewPanel->GetImageDataRange(range);
2148 }
2149
2150 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
2151 {
2152         //JCP 20-10-08 Undo redo implementation
2153         saveState();
2154         //JCP 20-10-08 Undo redo implementation
2155
2156         wxBusyCursor wait;
2157         int                                     x = _theViewPanel->GetX();
2158         int                                     y = _theViewPanel->GetY();
2159         int                             z;
2160         double                          porcent;
2161         wxString                        tmpString;
2162         double                          totalZ = maxZ-minZ+1;
2163         for( z=minZ ; z<=maxZ ; z++ )
2164         {
2165                 porcent = 100.0* (z-minZ)/totalZ;
2166                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2167                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2168                 //_staticTextSegmentation->SetLabel(tmpString);
2169                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2170         }
2171         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2172         RefreshInterface();
2173 }
2174
2175
2176 //Creates a reference line to be used as the axis of the mirroring
2177 void wxContourMainFrame::referenceLine()
2178 {
2179         if (_refLineControl==NULL)
2180         {
2181                 wxBusyCursor wait;
2182                 double spc[3];
2183
2184                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2185                 vtkimagedata->GetSpacing(spc);
2186
2187                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2188
2189                 _refLineControl = new manualLineControler();
2190                 _refLineModel   = new manualContourModelLine();
2191                 _refLineView = new manualViewLine();
2192                 _refLineView->SetModel( _refLineModel );
2193                 _refLineView->SetWxVtkBaseView( viewer2D );
2194                 _refLineView->SetRange( 2 );
2195                 _refLineView->SetZ( 1200 );
2196
2197                 _refLineView->SetSpacing(spc);
2198
2199                 _refLineView->SetColorNormalContour(0, 0, 1);
2200                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2201                 _refLineView->SetWidthLine(4);
2202
2203                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2204                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2205                 style->AddInteractorStyleMaracas( _refLineControl );
2206                 _refLineModel->SetCloseContour(false);
2207                 _refLineControl->CreateNewManualContour();
2208
2209 //AD: Inicializar el mirroring con una linea ya pintada
2210         /*
2211                 double z = _refLineControl->GetZ();
2212
2213                 int imageDim[3];
2214                 image->GetDimensions(imageDim);
2215                 double x = (double) imageDim[0]/2;
2216                 double y1 = (double) (imageDim[1]/2)+15;
2217                 double y2 = (double) (imageDim[1]/2)-15;
2218
2219                 _refLineControl->AddPoint(x,y1,z);
2220                 _refLineControl->AddPoint(x,y2,z);
2221                 _refLineControl->SetCompleteCreation(true);
2222
2223                 _refLineModel->AddPoint(x,y1,z);
2224                 _refLineModel->AddPoint(x,y2,z);
2225                 _refLineModel->UpdateSpline();
2226
2227                 _refLineView->UpdateViewPoint(0);
2228                 _refLineView->UpdateViewPoint(1);
2229         */
2230
2231                 _refLineControl->SetActive(true);
2232                 _refLineView->RefreshContour();
2233         }
2234 }
2235
2236 //Hides the referenceLine
2237 void wxContourMainFrame::refLineHide()
2238 {
2239         if (_refLineControl!=NULL)
2240         {
2241                 if (_refLineControl->GetActive())
2242                 {
2243                         _refLineView->RemoveCompleteContourActor();
2244                         _refLineControl->SetEditable(false);
2245                         _refLineControl->SetActive(false);
2246
2247                         RefreshInterface();
2248                 }
2249         }
2250 }
2251
2252 //Shows the referenceLine
2253 void wxContourMainFrame::refLineShow()
2254 {
2255         if (_refLineControl!=NULL)
2256         {
2257                 if (_refLineControl->GetActive()==false)
2258                 {
2259                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2260
2261                         _refLineView->SetModel( _refLineModel );
2262                         _refLineView->SetWxVtkBaseView( viewer2D );
2263                         _refLineView->SetRange( 2 );
2264                         _refLineView->SetZ( 1200 );
2265
2266                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2267                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2268                         style->AddInteractorStyleMaracas( _refLineControl );
2269                         _refLineControl->CreateNewManualContour();
2270                         _refLineControl->SetActive(true);
2271                         _refLineView->RefreshContour();
2272
2273                         RefreshInterface();
2274                 }
2275         }
2276 }
2277
2278 void wxContourMainFrame::refLineChangeWidth(int width)
2279 {
2280         _refLineView->SetWidthLine(width);
2281         _refLineView->RefreshContour();
2282
2283         RefreshInterface();
2284 }
2285
2286
2287 void wxContourMainFrame::onMirror()
2288 {
2289         //AD:02-09
2290         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2291         std::vector<std::string> filterCurrentSelection;
2292
2293         std::vector<int> tempVector;
2294         _instantPanel->getInstant( tempVector );
2295     _performingOperation->reset();
2296         _performingOperation->setStartCommand( COPY );
2297         _performingOperation->setStartOperationInstantVector( tempVector );
2298         _performingOperation->setKeyNamesOperationElems( currentSelection );
2299
2300         char theStartCommand = _performingOperation->getStartCommand();
2301         if (  theStartCommand == COPY )
2302         {
2303                 //JCP 20-10-08 Undo redo implementation
2304                 saveState();
2305                 //JCP 20-10-08 Undo redo implementation
2306                 std::vector<int> tempVector;
2307                 _instantPanel->getInstant( tempVector );
2308                 _performingOperation->setEndOperationInstantVector ( tempVector );
2309                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2310                 int i,size = elems.size();
2311                 for( i=0; i<size; i++ )
2312                 {
2313                         createMirrorContourOf( elems[i], tempVector, i>0 );
2314                 }
2315         }
2316
2317         //deleteContour( _refName );
2318         //_refName = "";
2319 }
2320
2321
2322 void wxContourMainFrame::showAxis(bool show)
2323 {
2324         _theViewPanel->SetVisibleAxis(show);
2325         _theViewPanel->Refresh();
2326 }
2327
2328
2329 void wxContourMainFrame::onRigidPressed(){
2330         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2331         int elementsSelected = currentSelection.size();
2332
2333         if ( elementsSelected >= 1 ){
2334                 //JCP 20-10-08 Undo redo implementation
2335                 saveState();
2336                 //JCP 20-10-08 Undo redo implementation
2337
2338                 std::vector<int> tempVector;
2339                 _instantPanel->getInstant( tempVector );
2340                 Instant instant(&tempVector);
2341
2342                 int i , size=currentSelection.size();
2343                 for ( i=0 ; i<size ; i++ )
2344                 {
2345                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2346                 } // i
2347         }
2348 }
2349
2350 void wxContourMainFrame::onWidthOfContour(double width){
2351
2352         _theViewPanel->removeSceneContours();
2353         _theViewPanel->SetWidthContour(width);
2354
2355         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2356
2357         RefreshInterface();
2358 }
2359
2360 int wxContourMainFrame::getColorWindow()
2361 {
2362         /*
2363         double range[2];
2364         vtkImageData * img = getImageData();
2365         img->GetScalarRange(range);
2366
2367         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2368
2369         return (int)range[1];
2370         */
2371         return _theViewPanel->getColorWindow();
2372 }
2373
2374 int wxContourMainFrame::getWindowLevel()
2375 {
2376         /*
2377         double range[2];
2378         vtkImageData * img = getImageData();
2379         img->GetScalarRange(range);
2380
2381         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2382
2383         return (int)range[1];
2384         */
2385         return _theViewPanel->getWindowLevel();
2386 }
2387
2388 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
2389 {
2390         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2391
2392         RefreshInterface();
2393 }
2394
2395 void wxContourMainFrame::onInterpolation(bool interpolate)
2396 {
2397         _theViewPanel->onInterpolation(interpolate);
2398         RefreshInterface();
2399 }
2400
2401 void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
2402 {
2403         _theViewPanel->onBeforeAfterContour(before,after);
2404         RefreshInterface();
2405 }
2406
2407 void wxContourMainFrame::onJumpSlice(int step, int shift)
2408 {
2409         std::vector<int> tempVector;
2410         _instantPanel->getInstant( tempVector );
2411         int ss  = abs(step);
2412         int pos         = tempVector[1];
2413         int maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2414         pos=(pos/ss)*ss+step+shift;
2415         if ((pos>=0) && (pos<maxZ))
2416         {
2417                 tempVector[1]=pos;
2418                 _instantPanel->setInstant( tempVector );
2419                 RefreshInterface();
2420         } // if pos
2421 }
2422
2423 void wxContourMainFrame::onShowTextContour(bool show)
2424 {
2425         _theViewPanel->onShowTextContour(show);
2426         RefreshInterface();
2427 }
2428
2429 void wxContourMainFrame::onChangeInstant(std::string name,int actual)
2430 {
2431         _instantPanel->setConceptValue( name, actual );
2432 }
2433
2434 void wxContourMainFrame::resetAppend()
2435 {
2436         kernelManager->resetAppend();
2437 }
2438
2439 void wxContourMainFrame::onSpreadAdd()
2440 {
2441         std::vector<double> vecX;
2442         std::vector<double> vecY;
2443         std::vector<double> vecZ;
2444         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2445         std::vector<int> tempVector;
2446         _instantPanel->getInstant( tempVector );
2447         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2448         interfMainPanel::getInstance()->appendStringSpread(val);
2449 }
2450
2451
2452 void wxContourMainFrame::onSpreadAddAll()
2453 {
2454 //EED02
2455         std::vector<int> tempVector;
2456         _instantPanel->getInstant( tempVector );
2457         int minZ,maxZ;
2458     minZ        = 0;
2459     maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2460         int z;
2461         int sizeLstContourThings;
2462         for ( z=minZ ; z<=maxZ ; z++ )
2463         {
2464                 tempVector[1]=z;
2465                 Instant instant(&tempVector);
2466                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2467                 sizeLstContourThings = lstContourThings.size();
2468                 if (sizeLstContourThings>=1)
2469         {
2470             std::vector<double> vecX;
2471             std::vector<double> vecY;
2472             std::vector<double> vecZ;
2473             ContourThing **contourthing = lstContourThings[0];
2474                         manualBaseModel *cModel                         =  (*contourthing)->getModel();
2475                         int i,size = cModel->GetNumberOfPointsSpline();
2476                         double x,y,z;
2477                         for (i=0; i<size; i++)
2478                         {
2479                                 cModel->GetSpline_i_Point(i, &x, &y, &z);
2480                                 vecX.push_back(x);
2481                                 vecY.push_back(y);
2482                                 vecZ.push_back(z);
2483                         } // for i
2484             std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2485             interfMainPanel::getInstance()->appendStringSpread(val);
2486         }// if sizeLstContourThings
2487     } // for z
2488 }
2489
2490
2491 void wxContourMainFrame::onSpreadGo(int type)
2492 {
2493         //JCP 20-10-08 Undo redo implementation
2494         saveState();
2495         //JCP 20-10-08 Undo redo implementation
2496         wxBusyCursor wait;
2497         std::vector<double> vecCtrlPointX;
2498         std::vector<double> vecCtrlPointY;
2499         std::vector<double> vecCtrlPointZ;
2500         double  minZ,maxZ;
2501         int z;
2502
2503         std::vector<int> tempVector;
2504         _instantPanel->getInstant( tempVector );
2505 //              tempVector[1];
2506
2507         kernelManager->getMaxMinZ(&minZ,&maxZ);
2508 //JSTG_16-07-08_----------------------------------------------------------------
2509         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2510         kernelManager->CalculeSplinePropagation();
2511
2512         double          totalZ = maxZ-minZ+1;
2513         double          porcent;
2514         wxString        tmpString;
2515 //--------------------------------------------------------------------
2516         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2517         {
2518                 porcent = 100.0* (z-minZ)/totalZ;
2519                 int numero = (int)(z-minZ+1)/(int)totalZ;
2520                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2521
2522                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2523
2524                 int typeofcontour = 1;
2525                 std::string theName;
2526                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2527
2528                 if( manModelContour!=NULL ){
2529                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2530                         this->_theViewPanel->getSpacing(spc);
2531                         //Adding the manualContourControler to interface objects structure
2532                         //Adding the manualViewContour to interface objects structure
2533                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2534                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2535                 } // if addedModel
2536         }
2537         if(z > maxZ){
2538                 porcent = 100.0;
2539                 int numero = (int)(z-minZ+1)/(int)totalZ;
2540                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2541
2542                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2543         }// for z
2544         //RefreshInterface();
2545 }
2546
2547 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
2548 {
2549         _instantPanel->getInstant( tempVector );
2550 }
2551
2552 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
2553 {
2554         std::vector<int> tempVector;
2555         _instantPanel->getInstant(tempVector);
2556         //Asignation of slide number should be different ex by name
2557         tempVector[1]=slide;
2558         return kernelManager->getOutlinesNameAtInstant(tempVector);
2559 }
2560
2561
2562 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2563 {
2564         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2565 }
2566
2567
2568 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2569 {
2570
2571         wxString tempString;
2572         int maxContourGroup     =       0;
2573
2574         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2575
2576         std::vector<manualBaseModel*> lstManConMod;
2577         std::vector<manualBaseModel*> lstManConModTmp;
2578         std::vector<manualBaseModel*> lstManConModExp;
2579         std::vector<double> pLstValue;
2580         std::vector<double> pLstValuePosX;
2581         std::vector<double> pLstValuePosY;
2582         std::vector<double> pLstValuePosZ;
2583
2584         int             resultSize;
2585         int             resultGrayRangeCount;
2586         double  resultMin;
2587         double  resultMax;
2588         double  resultAverage;
2589         double  resultStandardeviation;
2590
2591         std::vector<int> tempVector;
2592         _instantPanel->getInstant( tempVector );
2593
2594         int z;
2595         int ii,sizeLstContourThings;
2596
2597
2598         int minZ,maxZ;
2599         double totalZ;
2600         double porcent;
2601         wxString tmpString;
2602
2603
2604         if (selection==0 ) // actual slice
2605         {
2606                 int actualSlice = tempVector[1];
2607                 minZ    = actualSlice;
2608                 maxZ    = actualSlice;
2609         }       else  {  // slice range
2610                 minZ    = minimumZ;
2611                 maxZ    = maximumZ;
2612         }
2613
2614
2615         totalZ  = maxZ-minZ+1;
2616
2617         _contourextractdata->InitVolumeStatistics();
2618
2619 // For each slice..
2620         for ( z=minZ ; z<=maxZ ; z++ )
2621         {
2622
2623                 porcent = 100.0* (z-minZ)/totalZ;
2624                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2625
2626                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2627                 //_staticTextInformation->SetLabel(tmpString);
2628
2629                 //Extraction data from contours of each slice
2630                 _contourextractdata->SetZtoBeAnalys(z);
2631
2632                 tempVector[1]=z;
2633                 Instant instant(&tempVector);
2634                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2635                 sizeLstContourThings = lstContourThings.size();
2636
2637                 lstManConMod.clear();
2638                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2639                 {
2640                         ContourThing **contourthing = lstContourThings[ii];
2641                         lstManConMod.push_back( (*contourthing)->getModel() );
2642                 }
2643
2644                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2645
2646                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2647                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2648                 //_grid->SetRowLabelValue(z, tempString );
2649 //EED004
2650                 int iContourGroup,sizeContourGroup;
2651                 if (typeContourGroup==3) // contour separete
2652                 {
2653                         sizeContourGroup=lstManConModExp.size();
2654                         if ( maxContourGroup<sizeContourGroup )
2655                         {
2656                                 maxContourGroup=sizeContourGroup;
2657                         }
2658                 } else {  // contour AND OR XOR
2659                         sizeContourGroup=1;
2660                         maxContourGroup=1;
2661                 }
2662
2663                 int tmpIntA;
2664
2665                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2666                         lstManConModTmp.clear();
2667
2668
2669
2670                         if (typeContourGroup==3) // contour separete
2671                         {
2672                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2673                         } else {  // contour AND OR XOR
2674                                 lstManConModTmp = lstManConModExp;
2675                         }
2676
2677                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2678                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2679
2680                         pLstValue.clear();
2681                         pLstValuePosX.clear();
2682                         pLstValuePosY.clear();
2683                         pLstValuePosZ.clear();
2684
2685
2686                         int numberOfPixels;
2687                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2688                                                                                                                 &pLstValue,
2689                                                                                                                 &pLstValuePosX,
2690                                                                                                                 &pLstValuePosY,
2691                                                                                                                 &pLstValuePosZ);
2692
2693                         resultSize=numberOfPixels;
2694                         // Statistics of each slice.
2695                         _contourextractdata->Statistics( &pLstValue,
2696                                                                                         grayRangeMin,
2697                                                                                         grayRangeMax,
2698                                                                                         &resultGrayRangeCount,
2699                                                                                         &resultSize,
2700                                                                                         &resultMin,
2701                                                                                         &resultMax,
2702                                                                                         &resultAverage,
2703                                                                                         &resultStandardeviation);
2704
2705                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2706                         {
2707                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2708                         }
2709
2710                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2711
2712                         tempString.Printf(_T("%d"),numberOfPixels);
2713
2714                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2715
2716                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2717                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2718
2719                         tempString.Printf(_T("%f"),resultMin);
2720                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2721
2722                         tempString.Printf(_T("%f"),resultMax);
2723                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2724
2725                         tempString.Printf(_T("%f"),resultAverage);
2726                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2727
2728                         tempString.Printf(_T("%f"),resultStandardeviation);
2729                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2730
2731
2732                 } // for iContourGroup
2733         } // for z
2734
2735         // Print Volume Statistics
2736
2737
2738         int             vol_rCountRange;
2739         int             vol_rsize;
2740         double  vol_minValue;
2741         double  vol_maxValue;
2742         double  vol_average;
2743         double  vol_standardeviation;
2744
2745         if (selection!=0 ) // actual slice
2746         {
2747
2748                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2749                                                                                                  &vol_minValue, &vol_maxValue,
2750                                                                                                  &vol_average, &vol_standardeviation);
2751
2752                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2753
2754                 tempString.Printf(_T("%d"),vol_rsize);
2755                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2756
2757                 tempString.Printf(_T("%d"),vol_rCountRange);
2758                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2759
2760                 tempString.Printf(_T("%f"),vol_minValue);
2761                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2762
2763                 tempString.Printf(_T("%f"),vol_maxValue);
2764                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2765
2766                 tempString.Printf(_T("%f"),vol_average);
2767                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2768
2769                 tempString.Printf(_T("%f"),vol_standardeviation);
2770                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2771         }
2772         //-----------------------------------------
2773
2774         int iTitleGroup;
2775         wxString tmpTitleString;
2776         int tmpIntB;
2777         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2778         {
2779                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2780                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2781                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2782
2783                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2784                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2785                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2786                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2787                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2788                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2789                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2790         }// for title
2791         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2792 }
2793
2794 //AD: 29-05-09
2795 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2796         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2797 {
2798         if (XYZValues)
2799         {
2800                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2801         }
2802
2803         if (contourImage)
2804         {
2805                 vtkImageData * mask;
2806                 vtkImageData * value;
2807                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2808                 this->SaveImageResult( directory , namefile, mask, value);
2809         }
2810
2811         if (statistics)
2812         {
2813                 std::ostringstream name;
2814                 name << filename << ".xls";
2815
2816
2817                 FILE *pFile=fopen(name.str().c_str(),"w+");
2818
2819
2820                 wxString tmpString;
2821                 int i,j,maxX;
2822
2823 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2824 //              int maxY=sizeZ+2;
2825
2826                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2827
2828                 // -- Title --
2829                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2830                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2831                 {
2832                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2833                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2834                 }
2835                 fprintf(pFile,"\n\n" );
2836
2837
2838
2839                 if (selection==0 ) // actual slice
2840                 {
2841                         std::vector<int> tempVector;
2842                         _instantPanel->getInstant( tempVector );
2843                         int actualSlice = tempVector[1];
2844                         minZ    = actualSlice;
2845                         maxZ    = actualSlice;
2846                 }
2847
2848                 // Stadistics...
2849                 for ( j=minZ; j<=maxZ ; j++)
2850                 {
2851                         fprintf(pFile,"%d\t" , j );
2852                         for (i=0 ; i<maxX ; i++){
2853                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2854                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2855                         } // for i
2856                         fprintf(pFile,"\n"  );
2857                 } // for j
2858
2859
2860                 // Total of stadistics.....
2861                 if (selection!=0)
2862                 {
2863                         fprintf(pFile,"\n Total:\t"  );
2864                         for (i=0 ; i<maxX ; i++){
2865                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2866                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2867                         } // for i
2868                         fprintf(pFile,"\n"  );
2869                 }
2870
2871                 fclose(pFile);
2872         }
2873 }
2874
2875 //AD: 29-05-09
2876 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2877 {
2878         wxBusyCursor wait;
2879
2880         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2881         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2882
2883         std::vector<manualBaseModel*> lstManConMod;
2884         std::vector<manualBaseModel*> lstManConModTmp;
2885         std::vector<manualBaseModel*> lstManConModExp;
2886         std::vector<double> pLstValue;
2887         std::vector<double> pLstValuePosX;
2888         std::vector<double> pLstValuePosY;
2889         std::vector<double> pLstValuePosZ;
2890
2891         std::vector<int> tempVector;
2892         _instantPanel->getInstant( tempVector );
2893
2894         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2895         int z;
2896         int ii,sizeLstContourThings;
2897
2898
2899         int minZ,maxZ;
2900         double totalZ;
2901         double porcent;
2902         wxString tmpString;
2903         minZ    = 0;// _mbarrange->GetStart();
2904         maxZ    = sizeZ;//_mbarrange->GetEnd();
2905         totalZ  = maxZ-minZ+1;
2906
2907
2908 // For each slice..
2909         for ( z=0 ; z<sizeZ ; z++)
2910         {
2911
2912                 porcent = 100.0* (z-minZ)/totalZ;
2913
2914                 tmpString.Printf(_T("Saving Values"));
2915                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2916                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2917                 //_staticTextInformation->SetLabel(tmpString);
2918
2919
2920                 //Extraction data from contours of each slice
2921                 _contourextractdata->SetZtoBeAnalys( z);
2922
2923                 tempVector[1]=z;
2924                 Instant instant(&tempVector);
2925                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2926                 sizeLstContourThings = lstContourThings.size();
2927
2928                 lstManConMod.clear();
2929                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2930                 {
2931                         ContourThing **contourthing = lstContourThings[ii];
2932                         lstManConMod.push_back( (*contourthing)->getModel() );
2933                 }
2934                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2935
2936
2937 //EED004
2938
2939                 int iContourGroup,sizeContourGroup;
2940                 if (typeContourGroup==3) // contour separete
2941                 {
2942                         sizeContourGroup=lstManConModExp.size();
2943                 } else {  // contour AND OR XOR
2944                         sizeContourGroup=1;
2945                 }
2946
2947                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2948                         lstManConModTmp.clear();
2949                         if (typeContourGroup==3) // contour separete
2950                         {
2951                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2952                         } else {  // contour AND OR XOR
2953                                 lstManConModTmp = lstManConModExp;
2954                         }
2955
2956                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2957
2958                         pLstValue.clear();
2959                         pLstValuePosX.clear();
2960                         pLstValuePosY.clear();
2961                         pLstValuePosZ.clear();
2962                         int numberOfPixels;
2963                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2964                                                                                                                 &pLstValue,
2965                                                                                                                 &pLstValuePosX,
2966                                                                                                                 &pLstValuePosY,
2967                                                                                                                 &pLstValuePosZ);
2968
2969                         std::string temp = directory + "/" + namefile + "-slice";
2970                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2971                         temp = temp + ".txt";
2972
2973                         // LG 14/01/09 : using crea
2974                         wxString filename = crea::std2wx(temp);
2975                         /*filename.Printf(_T("%s"),directory.c_str());
2976                         filename.append(_T("\\"));
2977                         filename.append(_T("%s"),namefile.c_str());
2978                         filename.append(_T("-slice"));
2979                         filename.append(_T("%d"),z);
2980                         filename.append(_T("-cont"));
2981                         filename.append(_T("%d"),iContourGroup);
2982                         filename.append(_T(".txt"));*/
2983                         //                      filename.Printf(temp.c_str());
2984
2985
2986
2987                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2988                         fprintf(pFile,"value \t x \t y \t z\n"  );
2989                         int iLstValue,sizeLstValue=pLstValue.size();
2990                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2991                         {
2992                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2993                         }
2994                         fclose(pFile);
2995                 } // for  iContourGroup
2996         } // for z
2997         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2998         //_staticTextInformation->SetLabel( _T("") );
2999
3000 }
3001
3002 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
3003         wxBusyCursor wait;
3004
3005         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
3006         if (typeContourGroup==3)
3007         {
3008                 typeContourGroup=1;
3009         }
3010         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
3011
3012         std::vector<manualBaseModel*> lstManConMod;
3013         std::vector<manualBaseModel*> lstManConModTmp;
3014         std::vector<manualBaseModel*> lstManConModExp;
3015
3016         std::vector<int> tempVector;
3017         _instantPanel->getInstant( tempVector );
3018
3019     vtkImageData *imagedata = _theViewPanel->getImageData();
3020         int ext[6];
3021         imagedata->GetExtent(ext);
3022         int sizeZimage = ext[5]-ext[4]+1;
3023         int z;
3024         int ii,sizeLstContourThings;
3025
3026         double totalZ;
3027         double porcent;
3028
3029         wxString tmpString;
3030
3031
3032         if (selection==0 ) // actual slice
3033         {
3034                 int actualSlice = tempVector[1];
3035                 minZ    = actualSlice;
3036                 maxZ    = actualSlice;
3037         }
3038
3039         totalZ  = maxZ-minZ;
3040
3041
3042         // cleanning image before range
3043         for (z=0; z<minZ; z++){
3044                 _contourextractdata->ResetImageResult(z);
3045         }
3046         // cleanning image after range
3047         for (z=maxZ+1; z<sizeZimage; z++){
3048                 _contourextractdata->ResetImageResult(z);
3049         }
3050
3051
3052 // For each slice..
3053         for ( z=minZ ; z<=maxZ ; z++)
3054         {
3055
3056                 porcent = 100.0* (z-minZ)/totalZ;
3057                 tmpString.Printf(_T("Saving Values"));
3058                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
3059                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
3060
3061                 //Extraction data from contours of each slice
3062                 _contourextractdata->SetZtoBeAnalys( z);
3063
3064                 tempVector[1]=z;
3065                 Instant instant(&tempVector);
3066                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
3067                 sizeLstContourThings = lstContourThings.size();
3068
3069                 lstManConMod.clear();
3070                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
3071                 {
3072                         ContourThing **contourthing = lstContourThings[ii];
3073                         lstManConMod.push_back( (*contourthing)->getModel() );
3074                 }
3075                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
3076
3077
3078                 int iContourGroup,sizeContourGroup;
3079                 if (typeContourGroup==3) // contour separete
3080                 {
3081                         sizeContourGroup=lstManConModExp.size();
3082                 } else {  // contour AND OR XOR
3083                         sizeContourGroup=1;
3084                 }
3085
3086                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
3087                         lstManConModTmp.clear();
3088                         if (typeContourGroup==3) // contour separete
3089                         {
3090                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
3091                         } else {  // contour AND OR XOR
3092                                 lstManConModTmp = lstManConModExp;
3093                         }
3094
3095                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
3096                         _contourextractdata->CalculateImageResult(); // with actual Z
3097
3098                 } // for  iContourGroup
3099         } // for z
3100
3101         (*value) = _contourextractdata->GetVtkImageValueResult();
3102         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
3103
3104 }
3105
3106 std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
3107 {
3108         std::string result="";
3109         if ( image->GetScalarType()==VTK_CHAR )
3110         {
3111                 result="CHAR";
3112         } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
3113                 result="UCHAR";
3114         } else if ( image->GetScalarType()==VTK_FLOAT ){
3115                 result="FLOAT";
3116         } else if ( image->GetScalarType()==VTK_DOUBLE ){
3117                 result="DOUBLE";
3118         } else if ( image->GetScalarType()==VTK_INT ){
3119                 result="INT";
3120         } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
3121                 result="UINT";
3122         } else if ( image->GetScalarType()==VTK_SHORT ){
3123                 result="SHORT";
3124         } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
3125                 result="USHORT";
3126         } else if ( image->GetScalarType()==VTK_LONG ){
3127                 result="LONG";
3128         } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
3129                 result="ULONG";
3130         }
3131         return result;
3132 }
3133
3134 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
3135 {
3136         std::string stringType;
3137         double spc[3];
3138         kernelManager->GetSpacing(spc,0);   // returns the spacing of the first image
3139         stringType              = GetStringTypeImage(value);
3140         std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
3141
3142         wxString filename = crea::std2wx(temp);
3143
3144 // Image Value
3145
3146         vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
3147 //EED 2017-01-01 Migration VTK7
3148 #if VTK_MAJOR_VERSION <= 5
3149         valueChInfo->SetInput(value);
3150 #else
3151         valueChInfo->SetInputData(value);
3152 #endif
3153         valueChInfo->SetSpacingScale(spc);
3154         valueChInfo->Update();
3155         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3156
3157 //EED 2017-01-01 Migration VTK7
3158 #if VTK_MAJOR_VERSION <= 5
3159         writerValueImage->SetInput( valueChInfo->GetOutput() );
3160 #else
3161         writerValueImage->SetInputData( valueChInfo->GetOutput() );
3162 #endif
3163         writerValueImage->SetFileName( (const char *)filename.mb_str() );
3164         writerValueImage->SetFileDimensionality( 3 );
3165         writerValueImage->SetCompression(false);
3166         writerValueImage->Write( );
3167
3168 // Image Mask
3169         stringType              = GetStringTypeImage(mask);
3170         temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
3171
3172         // LG 14/01/09 : using crea
3173         filename = crea::std2wx(temp);
3174         //      filename.Printf(_T(temp.c_str()));
3175
3176
3177         vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3178 //EED 2017-01-01 Migration VTK7
3179 #if VTK_MAJOR_VERSION <= 5
3180         maskChInfo->SetInput(mask);
3181 #else
3182         maskChInfo->SetInputData(mask);
3183 #endif
3184         maskChInfo->SetSpacingScale(spc);
3185         maskChInfo->Update();
3186         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3187
3188 //EED 2017-01-01 Migration VTK7
3189 #if VTK_MAJOR_VERSION <= 5
3190         writerMaskImage->SetInput( maskChInfo->GetOutput() );
3191 #else
3192         writerMaskImage->SetInputData( maskChInfo->GetOutput() );
3193 #endif
3194
3195         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3196         writerMaskImage->SetFileDimensionality( 3 );
3197         writerMaskImage->SetCompression(false);
3198         writerMaskImage->Write( );
3199
3200         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3201
3202 }
3203
3204
3205
3206 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3207         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3208                 _theViewPanel->setActualVertical( value);
3209         }
3210         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
3211                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3212         }
3213
3214         changeInstant();
3215 }
3216
3217 void wxContourMainFrame::onSnakePressed(){
3218         std::vector<double> vecX;
3219         std::vector<double> vecY;
3220         std::vector<double> vecZ;
3221         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3222
3223         if (vecX.size()!=0){
3224                 std::vector<int> tempVector;
3225                 _instantPanel->getInstant( tempVector );
3226                 int i,size=vecZ.size();
3227                 int actualSlice = tempVector[1];
3228                 for ( i=0 ; i<size ; i++ )
3229                 {
3230                         vecZ[i] = actualSlice;
3231                 } // for
3232
3233                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3234                 wxPanel* panel = new wxPanel(dialog,-1);
3235                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3236          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3237                 dialog->ShowModal();
3238         } // if
3239
3240 }
3241
3242 void wxContourMainFrame::saveFileWithContoursAutomatique()
3243 {
3244 printf("EED wxContourMainFrame::saveFileWithContoursAutomatique \n");
3245         std::string filename = kernelManager->getCurrentFileName();
3246         if(filename.compare("")!=0){
3247                 saveFileWithContours(filename);
3248         }else{
3249                 onSave();
3250         }
3251 }
3252 void wxContourMainFrame::ShowToolsPanel(bool show)
3253 {
3254         _pannew->Show(show);
3255 }
3256
3257
3258
3259 void wxContourMainFrame::SetContourGroup(int contourGroup)
3260 {
3261         _contourGroup = contourGroup;
3262 }
3263
3264
3265 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3266 {
3267
3268         if      (_viewMaskImagePanel==NULL)
3269         {
3270                 _contourextractdata = new ContourExtractData(true);
3271                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3272 //              double range[2];
3273 //              _theViewPanel->getImageData()->GetScalarRange(range);
3274                 //int min = (int)floor (range[0]);
3275                 //int max = (int)ceil (range[1]);
3276
3277 //EED 2017-12-17
3278                 int min = 254;
3279                 int max = 256;
3280
3281                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1,  0);
3282                 _viewMaskImage = new ThresholdImageView();
3283                 _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
3284                 _viewMaskImage->SetminMaxValue( min, max);
3285                 _viewMaskImage->SetBaseColor( 0,0,1 );
3286
3287
3288                 std::vector<int> colorbarposition;
3289                 colorbarposition.push_back( -999 );
3290                 colorbarposition.push_back( -999 );
3291                 _viewMaskImage->SetColorBarPosition( colorbarposition );
3292                 double spc[3];
3293                 _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3294                 _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3295
3296                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3297                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3298                 _viewMaskImage->onThresholdChangeOpacity( 25 );
3299         }
3300         return _viewMaskImagePanel;
3301 }
3302
3303
3304 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3305 {
3306         if      (_viewColorLayerImagePanel==NULL)
3307         {
3308                 double range[2];
3309                 _theViewPanel->getImageData()->GetScalarRange(range);
3310                 int min = (int)floor (range[0]);
3311                 int max = (int)ceil (range[1]);
3312                 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
3313                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
3314         //    std::vector<double> range = bbGetInputlstRangeForColorBar();
3315         //    clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
3316                 std::vector<int> colorbarposition;
3317                 colorbarposition.push_back( 50 );
3318                 colorbarposition.push_back( 105 );
3319                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
3320         //    std::vector<double> base_color;
3321         //    _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
3322         //    std::vector<double> grey_level_boundaries;
3323         //    clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
3324                 std::vector<double> transparence_level_boundaries;
3325                 transparence_level_boundaries.push_back(0);
3326                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
3327                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
3328 //              _viewColorLayerImagePanel->SetFittingMode( 3 );
3329         }
3330         return _viewColorLayerImagePanel;
3331 }
3332
3333
3334 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3335 {
3336         if      (_viewThresholdImagePanel==NULL)
3337         {
3338                 double range[2];
3339                 _theViewPanel->getImageData()->GetScalarRange(range);
3340                 int min = (int)floor (range[0]);
3341                 int max = (int)ceil (range[1]);
3342                 int start= (max+min)/2 - (max-min)*0.25;
3343                 int end= (max+min)/2 + (max-min)*0.25;
3344                 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
3345                 _viewThresholdImage = new ThresholdImageView();
3346                 _viewThresholdImage->SetminMaxValue(start,end);
3347                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3348                 std::vector<int> colorbarposition;
3349                 colorbarposition.push_back( 10 );
3350                 colorbarposition.push_back( 105 );
3351                 _viewThresholdImage->SetColorBarPosition( colorbarposition );
3352                 double spc[3];
3353                 _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3354                 _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3355
3356                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3357                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3358                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3359                 _viewThresholdImage->onThresholdChangeOpacity( 25 );
3360                 RefreshInterface();
3361         }
3362         return _viewThresholdImagePanel;
3363 }
3364
3365 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3366 int wxContourMainFrame::getType ()
3367 {
3368         int tipo = 0;
3369         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3370
3371         if(!currentSelection.empty())
3372         {
3373                 std::string cloneName = currentSelection [0];
3374                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3375                 tipo = manualModel-> GetTypeModel();
3376         }
3377         return tipo;
3378 }
3379
3380 double wxContourMainFrame::getContourSizeInPixels()
3381 {
3382         double contourSize = 0;
3383
3384         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3385         if(!currentSelection.empty())
3386         {
3387                 std::string cloneName = currentSelection [0];
3388
3389                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3390
3391 // EED 2017-05-30
3392 //              contourSize = manualModel->GetPathSize();
3393                 double spc[3];
3394                 spc[0]=1;
3395                 spc[1]=1;
3396                 spc[2]=1;
3397                 contourSize = manualModel->GetPathSize( spc );
3398         }
3399         return contourSize;
3400 }
3401
3402 manualBaseModel * wxContourMainFrame::getContour ()
3403 {
3404         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3405
3406         if(!currentSelection.empty())
3407         {
3408                 std::string cloneName = currentSelection [0];
3409                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3410                 return manualModel;
3411         }
3412         return NULL;
3413 }
3414 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3415 {
3416         std::string labelAscii(label.ToAscii());
3417         int pos = labelAscii.find(" ");
3418
3419         int j;
3420
3421         for (j=0 ; pos != string::npos;j++)
3422         {
3423                 labelAscii.replace( pos, 1, "_" );
3424                 pos= labelAscii.find(" ");
3425         }
3426
3427         manualModel -> SetLabel(labelAscii);
3428 }
3429 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3430 {
3431 // EED 2017-05-30
3432 //      double sizeInPixel      = manualModel ->GetPathSize(  );
3433         double spc[3];
3434         spc[0]=1; // ????
3435         spc[1]=1; // ????
3436         spc[2]=1; // ????
3437         double sizeInPixel      = manualModel ->GetPathSize( spc );
3438
3439         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3440         double realContourSize  = sizeInPixel*onePixelRealSize;
3441         manualModel ->SetRealSize(realContourSize);
3442 }
3443
3444 double wxContourMainFrame::onePixelSize( double value)
3445 {
3446         return _onePixelSize = value;
3447 }
3448
3449 std::string wxContourMainFrame::GetFileLocation()
3450 {
3451         return _fileLocation;
3452 }
3453
3454 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3455 {
3456         _fileLocation = newFileLocation;
3457         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3458
3459 //EED 2019-12-17
3460         kernelManager->setCurrentFileName(_fileLocation);
3461 }
3462 //------------------------------------------------------------------------------------------------------------
3463
3464
3465
3466
3467
3468
3469
3470
3471 void wxContourMainFrame::FlipSelectedContours(int flipDirection)
3472 {
3473         FlipLstOfContours(
3474                             (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
3475                             flipDirection
3476                           );
3477
3478 }
3479
3480 void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
3481 {
3482         FlipLstOfContours(
3483                             (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
3484                             flipDirection
3485                           );
3486 }
3487
3488 void wxContourMainFrame::FlipAllContours(int flipDirection)
3489 {
3490         FlipLstOfContours(
3491                             kernelManager->GetLstNameThings() ,
3492                             flipDirection
3493                           );
3494 }
3495
3496 void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
3497 {
3498         int ext[6];
3499         getImageData()->GetExtent(ext);
3500         int sizeX = ext[1]-ext[0];
3501         int sizeY = ext[3]-ext[2];
3502
3503
3504         int i,sizeLstNameThings;
3505         int ii,sizeLstPoints;
3506
3507         sizeLstNameThings       = lstNameThings.size();
3508         for (i=0 ; i<sizeLstNameThings ; i++)
3509         {
3510                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3511                 if (flipDirection==0)
3512                 {
3513                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3514                 } else {
3515                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3516                 }
3517         }// for i  list of Things
3518
3519         //-- Static Contours
3520
3521         lstNameThings           = kernelManager->GetLstNameThingsStatic();
3522         sizeLstNameThings       = lstNameThings.size();
3523         for (i=0 ; i<sizeLstNameThings ; i++)
3524         {
3525                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3526                 if (flipDirection==0)
3527                 {
3528                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3529                 } else {
3530                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3531                 }
3532         }// for i  list of static things
3533 }
3534
3535 void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
3536 {
3537         saveState();
3538
3539         if (typeContourFlip==0) //
3540         {
3541                 FlipSelectedContours(flipDirection);
3542         }
3543
3544         if (typeContourFlip==1) //
3545         {
3546                 FlipActualSliceContours(flipDirection);
3547         }
3548
3549         if (typeContourFlip==2) //
3550         {
3551                 FlipAllContours(flipDirection);
3552         }
3553         RefreshInterface();
3554 }
3555
3556 void wxContourMainFrame::SetXY(int x, int y)
3557 {
3558         _theViewPanel->SetXY(x,y);
3559 }
3560
3561
3562
3563