1 //----------------------------------------------------------------------------------------------------------------
2 // Class definition include
3 //----------------------------------------------------------------------------------------------------------------
4 #include "wxContourMainFrame.h"
8 //----------------------------------------------------------------------------------------------------------------
10 //----------------------------------------------------------------------------------------------------------------
13 #include "NameWrapper.h"
14 #include "wx/artprov.h"
15 #include "ConceptDataWrap.h"
18 //----------------------------------------------------------------------------------------------------------------
19 // Class implementation
20 //----------------------------------------------------------------------------------------------------------------
21 /** @file wxContourMainFrame.cxx */
23 //------------------------------------------------------------------------------------------------------------
24 // Constructors & Destructors
25 //------------------------------------------------------------------------------------------------------------
27 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
28 char wxContourMainFrame::COPY = 'C';
30 wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
31 //: wxPanel(parent, id, title, pos, size, style)
32 //: wxWindow(parent, id, pos, size, style)
33 : wxPanel(parent, id, pos, size, style)
35 m_mgr.SetManagedWindow(this);
36 _creatingContoursActive = false;
38 // _modelManager = NULL;
40 // _buttonsBar = NULL;
42 // _drawToolsPanel = NULL;
43 // _operationsToolsPanel = NULL;
44 //_autoFormsPanel = NULL;
45 // _standardToolsPanel = NULL;
46 // _editionToolsPanel = NULL;
47 // _listViewPanel = NULL;
48 // _sceneManager = NULL;
49 //_actualInstant = NULL;
50 _numberOfVariablesStatistics = 6+1;
52 _refLineControl = NULL;
55 _imageReslicer = NULL;
56 _thresholdTable = NULL;
57 _thresholdMapper = NULL;
58 _thresholdActor = NULL;
59 _actorPresent = false;
61 // set up default notebook style
62 // m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
63 // m_notebook_theme = 0;
64 //wxContour_ActionCommandsID a;
68 wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
69 : wxPanel(parent, id, pos, size, style)
71 m_mgr.SetManagedWindow(this);
72 _creatingContoursActive = false;
76 _refLineControl = NULL;
79 _imageReslicer = NULL;
80 _thresholdTable = NULL;
81 _thresholdMapper = NULL;
82 _thresholdActor = NULL;
83 _actorPresent = false;
85 // set up default notebook style
86 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
88 //wxContour_ActionCommandsID a;
89 _numberOfVariablesStatistics = 7;
97 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
98 _performingOperation = new PerformingOperation();
100 if(images.size() > 0)
102 this->setVectImages(images);
107 void wxContourMainFrame::setVectImages( std::vector<vtkImageData*> images ){
109 #if defined(__GNUC__)
110 std::string str_home(getenv("HOME"));
111 #elif defined(_WIN32)
112 std::string str_home(getenv("USERPROFILE"));
114 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
116 std::vector<std::string> conceptNameVect;
117 std::vector<int> conceptSizeVect;
119 notebook = this->createNotebook();
122 kernelManager = new KernelManagerContour( images , _datadir+"/data/" , strCreaContourDataTmp );
125 _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
126 _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
128 //-------------------------------------------------------------
129 kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
130 _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
133 double val = _theViewPanel->getCurrentDeep();
134 _instantPanel->setConceptValue( "Axe Depth", (int)val );
135 //JCP _instantPanel->setConceptValue("time", num de imagenes);
136 ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
137 //*******************changeInstant();
138 _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
140 this->configurePanels( );
145 wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
146 if(instance == NULL){
147 instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
152 std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
154 return kernelManager->getVectImages();
157 wxContourMainFrame* wxContourMainFrame :: getInstance()
162 void wxContourMainFrame :: resetInstance()
167 wxContourMainFrame :: ~wxContourMainFrame()
171 interfMainPanel::resetInstance();
172 delete kernelManager;
174 //_pannew->Destroy();
180 //El problema al cerrar la aplicacion puede estar asociado
181 //a que wxAUINotebook esta en la aplicacion
182 //principal (wxContourGUIExample)tambien
183 //EED???? delete _theViewPanel;
184 //EED???? delete _instantPanel;
185 //EED???? delete _buttonsBar;
186 //EED???? delete _actualInstant;
187 //EED???? delete _sceneManager;
191 //------------------------------------------------------------------------------------------------------------
192 // Creational and initialization methods using WxAui
193 //------------------------------------------------------------------------------------------------------------
195 wxAuiNotebook * wxContourMainFrame :: createNotebook()
197 wxSize client_size = GetClientSize();
198 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
199 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
204 //------------------------------------------------------------------------------------------------------------
205 // Creational and initialization methods
206 //------------------------------------------------------------------------------------------------------------
207 bool wxContourMainFrame :: configurePanels( )
209 bool configured = _theViewPanel!=NULL;
211 configured &= _theViewPanel!=NULL;
212 if( _theViewPanel!=NULL )
214 notebook->AddPage( _theViewPanel, wxT(" View ") );
221 notebook->AddPage( _instantPanel, wxT("Instant Page") );
225 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
228 SetMinSize(wxSize(300,300));
234 bool wxContourMainFrame::addNewPanel(wxPanel* panel)
236 bool configured = panel!=NULL;
237 configured &= panel!=NULL;
241 notebook->AddPage( panel, wxT(" Viewer "), true );
247 //------------------------------------------------------------------------------------------------------------
248 // Attributes getters and setters
249 //------------------------------------------------------------------------------------------------------------
253 void wxContourMainFrame :: setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel )
255 _instantPanel = theInstantChooserPanel;
258 // void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
260 // _buttonsBar = theButtonsBar;
263 // void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
265 // _gridPanel = theGridPanel;
268 // void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
270 // _drawToolsPanel = theDrawToolsPanel;
273 // void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
275 // _operationsToolsPanel = theOperationsToolsPanel;
278 // void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
280 // _autoFormsPanel = theAutoFormsPanel;
283 // void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
285 // _standardToolsPanel= theStandardToolsPanel;
288 // void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
290 // _editionToolsPanel = theEditionToolsPanel;
293 // void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
295 // _listViewPanel = theListViewPanel;
300 void wxContourMainFrame::onCreateContourSpline( ){
302 //JCP 20-10-08 Undo redo implementation
304 //JCP 20-10-08 Undo redo implementation
308 void wxContourMainFrame::onCreateContourRectangle( ){
309 //JCP 20-10-08 Undo redo implementation
311 //JCP 20-10-08 Undo redo implementation
314 void wxContourMainFrame::onCreateContourCircle( ){
315 //JCP 20-10-08 Undo redo implementation
317 //JCP 20-10-08 Undo redo implementation
321 void wxContourMainFrame::onCreateContourLine( ){
322 //JCP 20-10-08 Undo redo implementation
324 //JCP 20-10-08 Undo redo implementation
328 //------------------------------------------------------------------------------------------------------------
330 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
332 //Creating the manualContourModel and including in the model
333 manualContourModel * manModelContour = factoryManualContourModel(panel );
335 std::vector<int> instantVector;
336 _instantPanel->getInstant( instantVector );
337 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
339 /*std::vector<int> instantVector;
340 _instantPanel->getInstant( instantVector );
342 theName= _modelManager->createOutline( manModelContour, instantVector );*/
343 bool addedModel = theName.compare("") != 0;//??
347 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
348 _theViewPanel->getSpacing(spc);
349 //Adding the manualContourControler to interface objects structure
350 //Adding the manualViewContour to interface objects structure
351 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
352 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
355 void wxContourMainFrame :: createContour( int typeContour )
357 //Creating the manualContourModel and including in the model
358 manualContourModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
361 std::vector<int> instantVector;
362 _instantPanel->getInstant( instantVector );
363 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
365 /*std::vector<int> instantVector;
366 _instantPanel->getInstant( instantVector );
368 theName= _modelManager->createOutline( manModelContour, instantVector );*/
369 bool addedModel = theName.compare("") != 0;//??
372 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
373 _theViewPanel->getSpacing(spc);
374 //Adding the manualContourControler to interface objects structure
375 //Adding the manualViewContour to interface objects structure
376 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
377 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
381 manualContourModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
383 manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
384 manualContourModel *manModelContour=NULL;
385 manModelContour = manModelContourBullEye;
387 int iCrown,sizeCrowns,iSector,sizeSectors;
388 double radioA,radioB,ang,angDelta ;
389 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
390 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
392 sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
393 radioB = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
394 if (iCrown==sizeCrowns-1)
398 radioA = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
402 for ( iSector=0 ; iSector<sizeSectors ; iSector++ )
404 ang = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
405 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
406 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
409 } // if _panelBullEyeOptions
411 return manModelContour;
413 void wxContourMainFrame :: saveState(){
415 std::string temp = kernelManager->saveState();
416 saveFileWithContours(temp);
419 void wxContourMainFrame::onDeleteContour(){
420 //JCP 20-10-08 Undo redo implementation
422 //JCP 20-10-08 Undo redo implementation
424 std::vector<std::string> lstKeyNameToBeErase;
425 lstKeyNameToBeErase = _theViewPanel->getSceneManager()->getSelectedObjects();
426 deleteContours( lstKeyNameToBeErase );
428 int i,size=_sceneManager->getSelectedObjects().size();
431 std::string keyName = _sceneManager->getSelectedObjects()[i];
432 int ispartofstaticlist = this->_modelManager->IsPartOfStaticList( keyName );
433 if ( ispartofstaticlist>=0 )
435 std::vector<int> tempVector;
436 _instantPanel->getInstant( tempVector );
437 Instant instant(&tempVector);
438 this->_modelManager->ChangeContourOfList(keyName, &instant);
442 std::vector<std::string> lstKeyName;
443 std::vector<std::string> lstKeyNameActualSlice;
444 std::vector<std::string> lstKeyNameToBeErase;
446 lstKeyNameToBeErase = _sceneManager->getSelectedObjects();
447 lstKeyNameActualSlice = _sceneManager->GetlstContoursNameActualSlice();
448 int k,kSize=lstKeyNameToBeErase.size();
449 int j,jSize=lstKeyNameActualSlice.size();
451 for (k=0;k<kSize; k++)
454 for (j=0;j<jSize; j++)
456 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
463 lstKeyName.push_back( lstKeyNameToBeErase[k] );
467 deleteContours( lstKeyName );
471 void wxContourMainFrame :: deleteContours( std::vector<std::string> keyNamesVector )
473 int i,size=keyNamesVector.size();
476 deleteContour( keyNamesVector[i] );
480 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
482 manualContourModel * cModel;
483 manualViewBaseContour * cViewer;
484 manualContourBaseControler * cControler;
486 ContourWrap_ViewControl *conwrapviewControl = _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
487 cControler = conwrapviewControl->getControler();*/
490 bool isedit = _theViewPanel->isEditableCControler(theKeyName);
491 bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
493 if (isedit && ispartofstaticlst)
495 _theViewPanel->removeFromScene(theKeyName);
497 kernelManager->deleteCModel(theKeyName);
498 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
499 //cViewer = conwrapviewControl->getViewer();
500 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
501 //cControler* conwrapviewControl->getControler();
503 //FILE *ff = fopen("c:/temp/wxVtkBaseView_SceneManagerStadistics.txt","a+");
504 //fprintf(ff,"EED wxContourEventHandler::deleteContours() \n" );
505 //fprintf(ff," %s %p\n",keyNamesVector[i].c_str(), cControler );
509 // delete cControler;
514 void wxContourMainFrame::onDeleteContoursActSlice(){
515 //JCP 20-10-08 Undo redo implementation
517 //JCP 20-10-08 Undo redo implementation
518 deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
520 void wxContourMainFrame::onDeleteAllContours(){
521 //JCP 20-10-08 Undo redo implementation
525 void wxContourMainFrame::deleteAllContours(){
526 //JCP 20-10-08 Undo redo implementation
529 std::vector<int> tempVector;
530 _instantPanel->getInstant( tempVector );
532 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
533 // the values in GetStart and GetEnd will then not be initialize also.
534 // We use instead the values given when initializing the _deletepanel.
536 //int minZ = _mbarrangeDeleteAll->GetStart();
537 //int maxZ = _mbarrangeDeleteAll->GetEnd();
541 maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
545 _theViewPanel->getSceneManager()->removeSceneContours( );
546 _theViewPanel->getSceneManager()->removeAllOutlines();
547 kernelManager->removeAllOutlines();
550 if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
552 _theViewPanel->getSceneManager()->removeSceneContours( );
553 _modelManager->removeAllOutlines();
554 _theViewPanel->getSceneManager()->removeAllOutlines();
557 for ( z=minZ ; z<=maxZ ; z++)
560 Instant instant(&tempVector);
561 std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
563 sizeLstContourThings = lstContourThings.size();
564 for (ii=0 ; ii<sizeLstContourThings ; ii++)
566 ContourThing **contourthing = lstContourThings[ii];
567 deleteContour( (*contourthing)->getName() );
574 void wxContourMainFrame::setConceptValue( std::string name, int value ){
575 _instantPanel->setConceptValue(name, value);
578 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
579 return _instantPanel->getLastConceptData();
581 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
582 return _instantPanel->getIfConceptCheckedAt( name, pos );
585 void wxContourMainFrame::changeInstant()
587 std::vector<int> instantVect;
588 _instantPanel->getInstant( instantVect );
589 // Instant * theInstant = new Instant ( &instantVect );
591 //Setting the actual instant
592 //_actualInstant = theInstant;
594 kernelManager->setInstant(instantVect);
595 //_modelManager->setInstant( _actualInstant );
598 updateInstantOutlines();
599 updateInstantImageData();
604 void wxContourMainFrame :: updateInstantOutlines()
606 _theViewPanel->removeSceneContours();
607 _theViewPanel->addNameWrapperToScene();
609 //for( int i=0; i<size; i++)
611 // _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
615 int wxContourMainFrame::getNamesWrappingSize(){
616 return kernelManager->getNamesWrappingSize();
618 std::string wxContourMainFrame::getNameWrapping(int i){
619 return kernelManager->getNameWrapping(i);
622 void wxContourMainFrame::updateInstantImageData()
624 std::vector<int> inst;
625 _instantPanel->getInstant(inst);
627 vtkImageData* img = kernelManager->getImageAtInstant(inst);
629 _theViewPanel->changeImage(img);
632 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
633 _theViewPanel->setImageSlice(z);
637 void wxContourMainFrame::updateInstantAxes()
642 void wxContourMainFrame::onChangeDeep(int val){
643 _instantPanel->setConceptValue( "Axe Depth", (int)val );
648 void wxContourMainFrame::onCopy(){
649 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
651 std::vector<int> tempVector;
652 _instantPanel->getInstant( tempVector );
653 _performingOperation->reset();
654 _performingOperation->setStartCommand( COPY );
655 _performingOperation->setStartOperationInstantVector( tempVector );
656 _performingOperation->setKeyNamesOperationElems( currentSelection );
659 void wxContourMainFrame::onPaste(){
662 char theStartCommand = _performingOperation->getStartCommand();
663 if ( theStartCommand == COPY )
665 //JCP 20-10-08 Undo redo implementation
667 //JCP 20-10-08 Undo redo implementation
668 std::vector<int> tempVector;
669 _instantPanel->getInstant( tempVector );
670 _performingOperation->setEndOperationInstantVector ( tempVector );
671 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
672 int i,size = elems.size();
673 for( i=0; i<size; i++ )
675 createCopyContourOf( elems[i], tempVector, i>0 );
679 void wxContourMainFrame::onUndo(){
680 std::string filename;
681 if(kernelManager->onUndoSaveFile(filename)){
682 saveFileWithContours(filename);
684 if(kernelManager->onUndo(filename)){
688 void wxContourMainFrame::onRedo(){
689 std::string filename;
690 if(kernelManager->onRedo(filename)){
695 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
697 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
698 manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
699 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
702 ///AD: 03-09 Copy the object and apply the given transformation
703 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
705 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
706 manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
708 manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
709 manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
711 double pnt1X = refPoint1->GetX();
712 double pnt1Y = refPoint1->GetY();
713 // double pnt1Z = refPoint1->GetZ();
714 double pnt2X = refPoint2->GetX();
715 double pnt2Y = refPoint2->GetY();
716 // double pnt2Z = refPoint2->GetZ();
718 double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
719 vtkTransform *t = vtkTransform::New();
723 t->Translate(-pnt1X, -pnt1Y, 0);
727 t->Translate(pnt1X, pnt1Y, 0);
730 int i,size=manualModel->GetSizeLstPoints();
733 manualPoint * mp = manualModel->GetManualPoint(i);
739 t->TransformPoint( vecIn, vecOut );
740 mp->SetPointX( vecOut[0] );
741 mp->SetPointY( vecOut[1] );
742 mp->SetPointZ( vecOut[2] );
745 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
748 void wxContourMainFrame ::loadState(std::string filename){
750 FILE *pFile=fopen(filename.c_str(),"r+");
752 fscanf(pFile,"%s",tmp); // --CreaContour--
754 fscanf(pFile,"%s",tmp); // Version
755 fscanf(pFile,"%s",tmp); // 1.0.1
756 std::string version(tmp);
760 openContours(pFile,false);
761 if (version!="1.0.0"){
762 openContours(pFile,true);
767 //_theViewPanel->getSceneManager()->removeSceneContours();
772 void wxContourMainFrame::onLoad(){
774 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
775 if (dialog.ShowModal() == wxID_OK)
777 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
778 FILE *pFile=fopen(fileNameContourROI.c_str(),"r+");
780 fscanf(pFile,"%s",tmp); // --CreaContour--
782 fscanf(pFile,"%s",tmp); // Version
783 fscanf(pFile,"%s",tmp); // 1.0.1
784 std::string version(tmp);
786 openContours(pFile,false);
787 if (version!="1.0.0"){
788 openContours(pFile,true);
790 // _theViewPanel->getSceneManager()->openFileWithContours(ff);
794 _theViewPanel->getSceneManager()->removeSceneContours();
797 void wxContourMainFrame::onSave(){
798 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
799 if (dialog.ShowModal() == wxID_OK)
801 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
802 kernelManager->setCurrentFileName(fileNameContourROI);
803 saveFileWithContours( fileNameContourROI );
806 void wxContourMainFrame::saveFileWithContours( std::string filename )
809 FILE *pFile=fopen(filename.c_str(),"w+");
810 std::vector< std::string > lstNameThings;
811 int i,sizeLstNameThings;
813 fprintf(pFile,"--CreaContour--\n");
814 fprintf(pFile,"Version %s\n", "1.0.1" );
817 lstNameThings = kernelManager->GetLstNameThings();
818 sizeLstNameThings = lstNameThings.size();
819 fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
820 for (i=0 ; i<sizeLstNameThings ; i++)
822 kernelManager->SaveThingName( pFile, lstNameThings[i] );
823 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
826 //-- Contours Statics
827 lstNameThings = kernelManager->GetLstNameThingsStatic();
828 sizeLstNameThings = lstNameThings.size();
829 fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
830 for (i=0 ; i<sizeLstNameThings ; i++)
832 kernelManager->SaveThingName( pFile, lstNameThings[i] );
833 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
838 void wxContourMainFrame::openContours( FILE *pFile, bool staticContour ){
840 fscanf(pFile,"%s",tmp); // NumberOfContours
841 fscanf(pFile,"%s",tmp); // ##
842 int numberOfContours = atoi(tmp);
844 std::vector<int> instantVector;
845 int typeContourModel;
846 manualContourModel *manModelContour;
850 for (i=0;i<numberOfContours;i++)
852 instantVector.clear();
853 fscanf(pFile,"%s",tmp); // Instant
855 fscanf(pFile,"%s",tmp); // 1
856 instantVector.push_back( atoi(tmp) );
857 fscanf(pFile,"%s",tmp); // 2
858 instantVector.push_back( atoi(tmp) );
859 fscanf(pFile,"%s",tmp); // 3
860 instantVector.push_back( atoi(tmp) );
861 fscanf(pFile,"%s",tmp); // 4
862 instantVector.push_back( atoi(tmp) );
863 fscanf(pFile,"%s",tmp); // 5
864 instantVector.push_back( atoi(tmp) );
865 fscanf(pFile,"%s",tmp); // 6
866 instantVector.push_back( atoi(tmp) );
869 fscanf(pFile,"%s",tmp); // TypeContourModel
870 fscanf(pFile,"%s",tmp); // ##
871 typeContourModel = atoi(tmp);
873 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
874 manModelContour->Open(pFile);
876 fscanf(pFile,"%s",tmp); // TypeView
877 fscanf(pFile,"%s",tmp); // ##
878 typeView = atoi(tmp);
887 theName = kernelManager->createOutline( manModelContour, instantVector );
888 bool addedModel = theName.compare("") != 0;
891 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
892 _theViewPanel->getSpacing(spc);
893 //Adding the manualContourControler to interface objects structure
894 //Adding the manualViewContour to interface objects structure
895 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
896 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
899 if (staticContour==true)
901 Instant instant(&instantVector);
902 kernelManager->changeContourOfManager( theName , &instant );
905 }// for numberOfContours
909 void wxContourMainFrame::RefreshInterface(){
911 _theViewPanel->RefreshInterface();
912 //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
913 //wxvtk2dbaseview->Refresh();
916 vtkImageData* wxContourMainFrame::getImageData(){
917 return _theViewPanel->getImageData();
920 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
922 //JCP 20-10-08 Undo redo implementation
924 //JCP 20-10-08 Undo redo implementation
927 int x = _theViewPanel->GetX();
928 int y = _theViewPanel->GetY();
929 int z = _theViewPanel->GetZ();
930 SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
934 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
936 int typeofcontour = 1;
938 vtkImageData *imagedata = getImageData();
940 //Tipo de pixeles a utilizar internamente en ITK
941 typedef float InternalPixelType;
942 const unsigned int Dimension = 2;
943 typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
945 //Tipo de pixeles de salida 1
946 typedef unsigned char OutputPixelType;
947 typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
949 //Tipo de pixeles de salida 2
950 typedef unsigned short OutputPixelType2;
951 typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
953 //DefiniciÛn del thresholder
954 typedef itk::BinaryThresholdImageFilter<
956 OutputImageType > ThresholdingFilterType;
958 //DefiniciÛn del primer filtro de conversiÛn de pixeles
959 typedef itk::CastImageFilter<
960 OutputImageType, OutputImageType2 > CastFilterType;
962 //DefiniciÛn del segundo tipo de conversiÛn de pixeles
963 typedef itk::CastImageFilter<
964 OutputImageType2, InternalImageType > CastFilterType2;
966 //Tercer tipo de conversiÛn
967 typedef itk::RescaleIntensityImageFilter<
969 OutputImageType > CastFilterType3;
971 //Cuarto tipo de conversiÛn
972 typedef itk::RescaleIntensityImageFilter<
974 OutputImageType > CastFilterType4;
976 ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
978 thresholder->SetLowerThreshold( 0.0 );
979 thresholder->SetUpperThreshold( 128 );
981 thresholder->SetOutsideValue( 255 );
982 thresholder->SetInsideValue( 0 );
984 //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
985 typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
986 typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
987 typedef itk::ImageFileWriter< OutputImageType > WriterType;
989 ConnectorType::Pointer connector= ConnectorType::New();
990 ConnectorType2::Pointer connector2= ConnectorType2::New();
993 CastFilterType::Pointer filter=CastFilterType::New();
994 CastFilterType2::Pointer filter2=CastFilterType2::New();
996 connector->SetInput( imagedata );
997 filter2->SetInput(connector->GetOutput());
999 typedef itk::CurvatureAnisotropicDiffusionImageFilter<
1001 InternalImageType > SmoothingFilterType;
1003 SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1005 typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
1007 InternalImageType > GradientFilterType;
1009 typedef itk::SigmoidImageFilter<
1011 InternalImageType > SigmoidFilterType;
1013 GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
1015 SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1017 sigmoid->SetOutputMinimum( 0.0 );
1018 sigmoid->SetOutputMaximum( 255.0 );
1021 typedef itk::FastMarchingImageFilter<
1023 InternalImageType > FastMarchingFilterType;
1026 FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
1028 typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1029 InternalImageType > GeodesicActiveContourFilterType;
1030 GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1031 GeodesicActiveContourFilterType::New();
1033 typedef itk::ZeroCrossingImageFilter<
1035 InternalImageType > ZeroCrossingFilterType;
1036 ZeroCrossingFilterType::Pointer zeroCrossing =
1037 ZeroCrossingFilterType::New();
1039 const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1041 geodesicActiveContour->SetPropagationScaling( propagationScaling );
1042 geodesicActiveContour->SetCurvatureScaling( 1.0 );
1043 geodesicActiveContour->SetAdvectionScaling( 1.0 );
1045 geodesicActiveContour->SetMaximumRMSError( 0.02 );
1046 int it=atoi( crea::wx2std(iter).c_str() );
1047 geodesicActiveContour->SetNumberOfIterations( it );
1049 smoothing->SetInput( filter2->GetOutput() );
1050 gradientMagnitude->SetInput( smoothing->GetOutput() );
1051 sigmoid->SetInput( gradientMagnitude->GetOutput() );
1052 fastMarching->SetInput( sigmoid->GetOutput() );
1053 geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1054 geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1056 zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1057 //thresholder->SetInput( zeroCrossing->GetOutput() );
1058 thresholder->SetInput( geodesicActiveContour->GetOutput() );
1059 connector2->SetInput( thresholder->GetOutput() );
1062 smoothing->SetTimeStep( 0.125 );
1063 smoothing->SetNumberOfIterations( 5 );
1064 smoothing->SetConductanceParameter( 9.0 );
1067 const double sigma = atof( crea::wx2std(sigm).c_str() );
1068 gradientMagnitude->SetSigma( sigma );
1070 const double alpha = atof( crea::wx2std(alf).c_str() );
1071 const double beta = atof( crea::wx2std(bet).c_str() );
1073 sigmoid->SetAlpha( alpha );
1074 sigmoid->SetBeta( beta );
1076 typedef FastMarchingFilterType::NodeContainer NodeContainer;
1077 typedef FastMarchingFilterType::NodeType NodeType;
1079 NodeContainer::Pointer seeds = NodeContainer::New();
1081 InternalImageType::IndexType seedPosition;
1082 seedPosition[0] = x;
1083 seedPosition[1] = y;
1085 const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1089 const double seedValue = - initialDistance;
1091 node.SetValue( seedValue );
1092 node.SetIndex( seedPosition );
1094 seeds->Initialize();
1095 seeds->InsertElement( 0, node );
1097 fastMarching->SetTrialPoints( seeds );
1099 fastMarching->SetSpeedConstant( 1.0 );
1101 fastMarching->SetOutputSize(
1102 connector->GetOutput()->GetBufferedRegion().GetSize() );
1104 fastMarching->SetStoppingValue( 800 );
1108 connector2->Update();
1109 vtkImageData *idata = connector2->GetOutput();
1111 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1113 cntVTK->SetInput( idata );
1115 cntVTK->SetNumberOfContours( 1 );
1116 cntVTK->SetValue( 0, 255 );
1118 cntVTK->UpdateInformation();
1120 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1121 cpd->SetInput( cntVTK->GetOutput( ) );
1123 cpd->UpdateInformation();
1125 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1126 conn->SetExtractionModeToLargestRegion( );
1127 conn->SetInput( cpd->GetOutput( ) );
1129 conn->UpdateInformation();
1131 vtkStripper* vtkstripper = vtkStripper::New( );
1132 vtkstripper->SetInput( conn->GetOutput() );
1133 vtkstripper->Update();
1134 vtkstripper->UpdateInformation();
1137 vtkPolyData* polyDataResult = cntVTK->GetOutput();
1138 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1139 polyDataResult->Update( );
1140 polyDataResult->UpdateInformation();
1145 myfile.open ("C:/Creatis/example.txt");
1147 polyDataResult->Print(myfile);
1148 myfile << "-------------------------------------\n";
1149 polyDataResult->GetLines()->Print(myfile);
1157 //--Calculating control points
1159 std::vector<double> vecX;
1160 std::vector<double> vecY;
1161 std::vector<double> vecXo;
1162 std::vector<double> vecYo;
1163 std::vector<double>::iterator vecXoi;
1164 std::vector<double>::iterator vecYoi;
1165 std::vector<double> vecZ;
1167 std::vector<double> vecCtrlPointX;
1168 std::vector<double> vecCtrlPointY;
1169 std::vector<double> vecCtrlPointZ;
1175 int ii,size=polyDataResult->GetNumberOfPoints();
1177 myfile.open ("C:/Creatis/example2.txt");
1179 size=polyDataResult->GetNumberOfPoints();
1180 for (ii=0;ii<size;ii++)
1187 p = polyDataResult->GetPoint(ii);
1190 /*if(fabs(yAct-y)>20)
1192 if((xAct-x)>1 || (xAct-x)<-1)
1194 vecX.push_back( p[0] );
1195 vecY.push_back( p[1] );
1196 myfile <<p[0]<<","<<p[1]<<"\n";
1197 std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1198 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1199 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1200 vecZ.push_back( 900 );
1206 vecXo.push_back(p[0]);
1207 vecYo.push_back(p[1]);
1211 else*/ if(fabs(xAct-x)>11)
1213 vecXo.push_back(p[0]);
1214 vecYo.push_back(p[1]);
1218 vecX.push_back( p[0] );
1219 myfile <<p[0]<<","<<p[1]<<"\n";
1220 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1221 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1222 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1223 vecY.push_back( p[1] );
1224 vecZ.push_back( 900 );
1232 while(!vecXo.empty())
1234 vecX.push_back(vecXo.back());
1235 //std::cout<<" x Siguiente "<<vecXo.back();
1237 vecZ.push_back( 900 );
1239 while(!vecYo.empty())
1241 vecY.push_back(vecYo.back());
1246 /*for(int l=0;l<vecX.size();l++)
1250 vecXo.push_back(p[0]);
1251 vecYo.push_back(p[1]);
1262 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1264 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1268 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1270 else if (method==1){
1271 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1273 else if (method==2){
1274 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1275 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1277 //--Adding contour to the system
1279 std::vector<int> actualInstantVector;
1280 _instantPanel->getInstant( actualInstantVector );
1281 actualInstantVector[1]=z;
1283 int j,sizeCtrPt = vecCtrlPointX.size();
1285 manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1286 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1288 for (j=0 ; j<sizeCtrPt ; j++)
1290 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
1292 std::string theName;
1293 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1294 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1295 bool addedModel = theName.compare("") != 0;
1298 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1299 _theViewPanel->getSpacing(spc);
1300 //Adding the manualContourControler to interface objects structure
1301 //Adding the manualViewContour to interface objects structure
1302 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1303 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1304 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1310 WriterType::Pointer writer = WriterType::New();
1311 CastFilterType3::Pointer caster = CastFilterType3::New();
1313 caster->SetInput( gradientMagnitude->GetOutput() );
1314 writer->SetInput( caster->GetOutput() );
1315 writer->SetFileName("Gradient Magnitude.png");
1316 caster->SetOutputMinimum( 0 );
1317 caster->SetOutputMaximum( 255 );
1320 CastFilterType3::Pointer caster2 = CastFilterType3::New();
1321 WriterType::Pointer writer2 = WriterType::New();
1323 caster2->SetInput( sigmoid->GetOutput() );
1324 writer2->SetInput( caster2->GetOutput() );
1325 writer2->SetFileName("Sigmoid.png");
1326 caster2->SetOutputMinimum( 0 );
1327 caster2->SetOutputMaximum( 255 );
1330 CastFilterType3::Pointer caster3 = CastFilterType3::New();
1331 WriterType::Pointer writer3 = WriterType::New();
1333 caster3->SetInput( fastMarching->GetOutput() );
1334 writer3->SetInput( caster3->GetOutput() );
1335 writer3->SetFileName("FastMarching.bmp");
1336 caster3->SetOutputMinimum( 0 );
1337 caster3->SetOutputMaximum( 255 );
1340 CastFilterType3::Pointer caster4 = CastFilterType3::New();
1341 WriterType::Pointer writer4 = WriterType::New();
1343 caster4->SetInput( geodesicActiveContour->GetOutput() );
1344 writer4->SetInput( caster4->GetOutput() );
1345 writer4->SetFileName("GeodesicActiveContour.png");
1346 caster4->SetOutputMinimum( 0 );
1347 caster4->SetOutputMaximum( 255 );
1350 CastFilterType3::Pointer caster5 = CastFilterType3::New();
1351 WriterType::Pointer writer5 = WriterType::New();
1353 caster5->SetInput( zeroCrossing->GetOutput() );
1354 writer5->SetInput( caster5->GetOutput() );
1355 writer5->SetFileName("ZeroCrossing.bmp");
1356 caster5->SetOutputMinimum( 0 );
1357 caster5->SetOutputMaximum( 255 );
1360 catch( itk::ExceptionObject & excep )
1362 std::cerr << "Exception caught !" << std::endl;
1363 std::cerr << excep << std::endl;
1367 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1369 //JCP 20-10-08 Undo redo implementation
1371 //JCP 20-10-08 Undo redo implementation
1374 int x = _theViewPanel->GetX();
1375 int y = _theViewPanel->GetY();
1376 int z = _theViewPanel->GetZ();
1377 SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1382 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1384 int typeofcontour = 1;
1385 //--Extracting Contour
1386 //vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
1387 vtkImageData *imagedata = getImageData();
1388 // double *range = imagedata->GetScalarRange();
1391 vtkImageReslice *imageReslice = vtkImageReslice::New();
1394 // imagedata->GetSpacing(spc);
1399 imageReslice->SetInput( imagedata );
1400 imageReslice->SetInformationInput(imagedata);
1401 imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1402 imageReslice->SetResliceAxesOrigin(0,0,z);
1403 imageReslice->SetOutputDimensionality(2);
1404 imageReslice->SetInterpolationModeToLinear();
1406 imagedata = imageReslice->GetOutput();
1407 imagedata->Update();
1408 imagedata->UpdateInformation();
1410 vtkContourFilter* cntVTK = vtkContourFilter::New( );
1411 cntVTK->SetInput( imagedata );
1413 cntVTK->SetNumberOfContours( 1 );
1414 //cntVTK->SetValue( 0, vmin );
1415 // cntVTK->SetValue( 0, (range[1]*thr/100) );
1416 cntVTK->SetValue( 1, isovalue );
1417 // cntVTK->SetValue( 1, vmax );
1419 cntVTK->UpdateInformation();
1421 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1422 cpd->SetInput( cntVTK->GetOutput( ) );
1423 cpd->ConvertLinesToPointsOff( );
1425 cpd->UpdateInformation();
1427 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1428 conn->SetExtractionModeToClosestPointRegion( );
1429 //conn->SetMaxRecursionDepth( 3000 );
1431 conn->SetInput( cpd->GetOutput( ) );
1433 conn->SetClosestPoint( x, y, 0 );
1435 conn->UpdateInformation();
1437 vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1438 cpd2->SetInput( conn->GetOutput( ) );
1440 cpd2->UpdateInformation();
1442 vtkStripper* vtkstripper = vtkStripper::New( );
1443 vtkstripper->SetInput( cpd2->GetOutput() );
1444 vtkstripper->Update();
1445 vtkstripper->UpdateInformation();
1448 vtkPolyData* polyDataResult = vtkstripper->GetOutput();
1450 polyDataResult->Update( );
1451 polyDataResult->UpdateInformation();
1455 myfile.open ("c:/temp/example.txt");
1457 polyDataResult->Print(myfile);
1458 myfile << "-------------------------------------\n";
1459 polyDataResult->GetLines()->Print(myfile);
1469 //--Calculating control points
1471 std::vector<double> vecX;
1472 std::vector<double> vecY;
1473 std::vector<double> vecZ;
1475 std::vector<double> vecCtrlPointX;
1476 std::vector<double> vecCtrlPointY;
1477 std::vector<double> vecCtrlPointZ;
1481 int ii,size=polyDataResult->GetNumberOfPoints();
1483 for (ii=1;ii<=size;ii++)
1485 id = polyDataResult->GetLines()->GetData()->GetValue(ii);
1486 p = polyDataResult->GetPoint(id);
1489 vecX.push_back( p[0] );
1490 vecY.push_back( p[1] );
1491 vecZ.push_back( 900 );
1492 // vecZ.push_back( p[2] );
1496 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1497 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1500 /*if (methodRadiobox->GetSelection()==0){
1501 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1503 if (methodRadiobox->GetSelection()==1){
1504 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1506 if (methodRadiobox->GetSelection()==2){
1507 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1508 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1512 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1514 else if (method==1){
1515 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1517 else if (method==2){
1518 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1519 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1522 //--Adding contour to the system
1524 std::vector<int> actualInstantVector;
1525 _instantPanel->getInstant( actualInstantVector );
1526 actualInstantVector[1]=z;
1528 int j,sizeCtrPt = vecCtrlPointX.size();
1529 manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1530 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1532 for (j=0 ; j<sizeCtrPt ; j++)
1534 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
1536 std::string theName;
1537 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1538 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1539 bool addedModel = theName.compare("") != 0;
1542 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1543 _theViewPanel->getSpacing(spc);
1544 //Adding the manualContourControler to interface objects structure
1545 //Adding the manualViewContour to interface objects structure
1546 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1547 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1548 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1552 int wxContourMainFrame::GetImageDataSizeZ(){
1553 return _theViewPanel->GetImageDataSizeZ();
1556 void wxContourMainFrame::GetImageDataRange(double *range){
1557 _theViewPanel->GetImageDataRange(range);
1560 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
1561 //JCP 20-10-08 Undo redo implementation
1563 //JCP 20-10-08 Undo redo implementation
1566 int x = _theViewPanel->GetX();
1567 int y = _theViewPanel->GetY();
1571 double totalZ = maxZ-minZ+1;
1572 for( z=minZ ; z<=maxZ ; z++ )
1574 porcent = 100.0* (z-minZ)/totalZ;
1575 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
1576 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
1577 //_staticTextSegmentation->SetLabel(tmpString);
1578 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
1580 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T(" "));
1585 //Creates a reference line to be used as the axis of the mirroring
1586 void wxContourMainFrame::referenceLine()
1588 if (_refLineControl==NULL)
1593 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
1594 vtkimagedata->GetSpacing(spc);
1596 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1598 _refLineControl = new manualLineControler();
1599 _refLineModel = new manualContourModelLine();
1600 _refLineView = new manualViewLine();
1601 _refLineView->SetModel( _refLineModel );
1602 _refLineView->SetWxVtkBaseView( viewer2D );
1603 _refLineView->SetRange( 2 );
1604 _refLineView->SetZ( 1200 );
1606 _refLineView->SetSpacing(spc);
1608 _refLineView->SetColorNormalContour(0, 0, 1);
1609 _refLineView->SetColorEditContour(0, 0.5, 0.5);
1610 _refLineView->SetWidthLine(4);
1612 _refLineControl->SetModelView( _refLineModel , _refLineView );
1613 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
1614 style->AddInteractorStyleMaracas( _refLineControl );
1615 _refLineModel->SetCloseContour(false);
1616 _refLineControl->CreateNewManualContour();
1618 //EED?? double z = _refLineControl->GetZ();
1620 _refLineControl->AddPoint(50,100,z);
1621 _refLineControl->AddPoint(80,40,z);
1622 _refLineControl->SetCompleteCreation(true);
1624 _refLineModel->AddPoint(50,100,z);
1625 _refLineModel->AddPoint(80,40,z);
1626 _refLineModel->UpdateSpline();
1628 _refLineView->UpdateViewPoint(0);
1629 _refLineView->UpdateViewPoint(1);
1632 _refLineControl->SetActive(true);
1633 _refLineView->RefreshContour();
1637 //Hides the referenceLine
1638 void wxContourMainFrame::refLineHide()
1640 if (_refLineControl!=NULL)
1642 if (_refLineControl->GetActive())
1644 _refLineView->RemoveCompleteContourActor();
1645 _refLineControl->SetEditable(false);
1646 _refLineControl->SetActive(false);
1653 //Shows the referenceLine
1654 void wxContourMainFrame::refLineShow()
1656 if (_refLineControl!=NULL)
1658 if (_refLineControl->GetActive()==false)
1660 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1662 _refLineView->SetModel( _refLineModel );
1663 _refLineView->SetWxVtkBaseView( viewer2D );
1664 _refLineView->SetRange( 2 );
1665 _refLineView->SetZ( 1200 );
1667 _refLineControl->SetModelView( _refLineModel , _refLineView );
1668 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
1669 style->AddInteractorStyleMaracas( _refLineControl );
1670 _refLineControl->CreateNewManualContour();
1671 _refLineControl->SetActive(true);
1672 _refLineView->RefreshContour();
1679 void wxContourMainFrame::refLineChangeWidth(int width)
1681 _refLineView->SetWidthLine(width);
1682 _refLineView->RefreshContour();
1688 void wxContourMainFrame::onMirror()
1691 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1692 std::vector<std::string> filterCurrentSelection;
1694 std::vector<int> tempVector;
1695 _instantPanel->getInstant( tempVector );
1696 _performingOperation->reset();
1697 _performingOperation->setStartCommand( COPY );
1698 _performingOperation->setStartOperationInstantVector( tempVector );
1699 _performingOperation->setKeyNamesOperationElems( currentSelection );
1701 char theStartCommand = _performingOperation->getStartCommand();
1702 if ( theStartCommand == COPY )
1704 //JCP 20-10-08 Undo redo implementation
1706 //JCP 20-10-08 Undo redo implementation
1707 std::vector<int> tempVector;
1708 _instantPanel->getInstant( tempVector );
1709 _performingOperation->setEndOperationInstantVector ( tempVector );
1710 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
1711 int i,size = elems.size();
1712 for( i=0; i<size; i++ )
1714 createMirrorContourOf( elems[i], tempVector, i>0 );
1718 //deleteContour( _refName );
1722 void wxContourMainFrame::onThreshold()
1724 int z = _theViewPanel->GetZ();
1727 vtkImageData * img = getImageData();
1728 img->GetScalarRange(range);
1730 int minTot = floor (range[0]);
1731 int maxTot = ceil (range[1]);
1734 _pannew->onThresholdInstantChange(minMax);
1735 int minVal = floor (minMax[0]);
1736 int maxVal = floor (minMax[1]);
1740 if (_imageReslicer==NULL)
1742 _imageReslicer = vtkImageReslice::New();
1743 _imageReslicer->SetInput( img );
1744 _imageReslicer->SetInformationInput(img);
1745 _imageReslicer->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1746 _imageReslicer->SetOutputDimensionality(2);
1747 _imageReslicer->SetInterpolationModeToLinear();
1750 _imageReslicer->SetResliceAxesOrigin(0,0,z);
1752 img = _imageReslicer->GetOutput();
1754 img->UpdateInformation();
1756 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
1758 if (_thresholdTable==NULL)
1761 _thresholdTable = vtkLookupTable::New();
1762 _thresholdTable->SetNumberOfTableValues(maxTot+1);
1763 _thresholdTable->SetTableRange(range);
1764 _thresholdTable->SetAlphaRange(0, 1);
1765 _thresholdTable->SetValueRange(0, 1);
1766 _thresholdTable->SetSaturationRange(0, 0);
1767 _thresholdTable->SetRampToLinear( );
1770 //Assign a fake color for the upper image, and set the white as transparent
1772 for(i = minTot; i <= maxTot; i++)
1774 if( i >= minVal && i <= maxVal )
1776 _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1);
1778 else if( i >= minTot && i < minVal )
1780 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1782 else if( i > maxVal && i < maxTot )
1784 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1788 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1791 _thresholdTable->Build( );
1793 if (_thresholdMapper==NULL)
1795 _thresholdMapper = vtkImageMapToColors::New( );
1798 _thresholdMapper->SetLookupTable( _thresholdTable );
1799 _thresholdMapper->SetInput( img );
1801 if (_thresholdActor==NULL)
1803 _thresholdActor = vtkImageActor::New( );
1804 _thresholdActor->SetOpacity( 0.6 );
1805 _thresholdActor->InterpolateOn( );
1806 _thresholdActor->SetPosition( 0,0, 900-1 );
1809 _thresholdActor->SetInput( _thresholdMapper->GetOutput() );
1811 baseView->GetRenderer()->AddActor( _thresholdActor );
1812 _actorPresent = true;
1817 _imageReslicer->SetResliceAxesOrigin(0,0,z);
1818 img = _imageReslicer->GetOutput();
1820 img->UpdateInformation();
1822 //Assign a fake color for the upper image, and set the white as transparent
1824 for(i = minTot; i <= maxTot; i++)
1826 if( i >= minVal && i <= maxVal )
1828 _thresholdTable->SetTableValue(i, 1.0, 0.0, 0.0, 1);
1830 else if( i >= minTot && i < minVal )
1832 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1834 else if( i > maxVal && i < maxTot )
1836 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1840 _thresholdTable->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1844 _thresholdTable->Build( );
1845 _thresholdMapper->SetLookupTable( _thresholdTable );
1846 _thresholdMapper->SetInput( img );
1847 _thresholdActor->SetInput( _thresholdMapper->GetOutput() );
1850 vtkImageViewer2* viewer = vtkImageViewer2::New();
1851 viewer->SetInput( upperImageActor->GetInput() );
1852 viewer->SetColorLevel((range[1]-range[0])/2);
1853 viewer->SetColorWindow(range[1]);
1854 viewer->GetRenderer()->AddActor( upperImageActor );
1857 _theViewPanel->RefreshInterface();
1861 void wxContourMainFrame::onThresholdChange()
1869 void wxContourMainFrame::onThresholdInterpolation(bool interpolate)
1871 if (_thresholdActor!=NULL)
1875 _thresholdActor->InterpolateOn( );
1880 _thresholdActor->InterpolateOff( );
1883 _theViewPanel->RefreshInterface();
1887 void wxContourMainFrame::onThresholdChangeOpacity (int opacity)
1891 _thresholdActor->SetOpacity(opacity*0.1);
1894 _theViewPanel->RefreshInterface();
1897 void wxContourMainFrame::onThresholdRemove()
1901 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
1902 baseView->GetRenderer()->RemoveActor( _thresholdActor );
1903 _actorPresent = false;
1906 _theViewPanel->RefreshInterface();
1909 void wxContourMainFrame::showAxis(bool show)
1911 _theViewPanel->SetVisibleAxis(show);
1912 _theViewPanel->Refresh();
1916 void wxContourMainFrame::onRigidPressed(){
1917 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1918 int elementsSelected = currentSelection.size();
1920 if ( elementsSelected >= 1 ){
1921 //JCP 20-10-08 Undo redo implementation
1923 //JCP 20-10-08 Undo redo implementation
1925 std::vector<int> tempVector;
1926 _instantPanel->getInstant( tempVector );
1927 Instant instant(&tempVector);
1929 int i , size=currentSelection.size();
1930 for ( i=0 ; i<size ; i++ )
1932 kernelManager->changeContourOfManager(currentSelection[i], &instant);
1937 void wxContourMainFrame::onWidthOfContour(double width){
1939 _theViewPanel->removeSceneContours();
1940 _theViewPanel->SetWidthContour(width);
1942 //_theViewPanel->getSceneManager()->SetWidthContour( width );
1946 int wxContourMainFrame::getColorWindow(){
1947 return _theViewPanel->getColorWindow();
1949 int wxContourMainFrame::getWindowLevel(){
1950 return _theViewPanel->getWindowLevel();
1953 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
1954 _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
1959 void wxContourMainFrame::onInterpolation(bool interpolate){
1960 _theViewPanel->onInterpolation(interpolate);
1964 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
1965 _instantPanel->setConceptValue( name, actual );
1968 void wxContourMainFrame::resetAppend(){
1969 kernelManager->resetAppend();
1973 void wxContourMainFrame::onSpreadAdd(){
1974 std::vector<double> vecX;
1975 std::vector<double> vecY;
1976 std::vector<double> vecZ;
1977 _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
1979 std::vector<int> tempVector;
1980 _instantPanel->getInstant( tempVector );
1982 std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
1984 interfMainPanel::getInstance()->appendStringSpread(val);
1988 void wxContourMainFrame::onSpreadGo(int type){
1990 //JCP 20-10-08 Undo redo implementation
1992 //JCP 20-10-08 Undo redo implementation
1995 std::vector<double> vecCtrlPointX;
1996 std::vector<double> vecCtrlPointY;
1997 std::vector<double> vecCtrlPointZ;
2001 std::vector<int> tempVector;
2002 _instantPanel->getInstant( tempVector );
2005 kernelManager->getMaxMinZ(&minZ,&maxZ);
2006 //JSTG_16-07-08_----------------------------------------------------------------
2007 //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2008 kernelManager->CalculeSplinePropagation();
2010 double totalZ = maxZ-minZ+1;
2013 //--------------------------------------------------------------------
2014 for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2016 porcent = 100.0* (z-minZ)/totalZ;
2017 int numero = (int)(z-minZ+1)/(int)totalZ;
2018 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2020 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2022 int typeofcontour = 1;
2023 std::string theName;
2024 manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2026 if( manModelContour!=NULL ){
2027 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2028 this->_theViewPanel->getSpacing(spc);
2029 //Adding the manualContourControler to interface objects structure
2030 //Adding the manualViewContour to interface objects structure
2031 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2032 _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2037 int numero = (int)(z-minZ+1)/(int)totalZ;
2038 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2040 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2042 //RefreshInterface();
2045 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2049 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2050 std::vector<int> tempVector;
2051 _instantPanel->getInstant(tempVector);
2052 //Asignation of slide number should be different ex by name
2053 tempVector[1]=slide;
2054 return kernelManager->getOutlinesNameAtInstant(tempVector);
2057 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ){
2058 int maxContourGroup = 0;
2060 ContourExtractData *contourextractdata = new ContourExtractData();
2062 contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2064 std::vector<manualContourModel*> lstManConMod;
2065 std::vector<manualContourModel*> lstManConModTmp;
2066 std::vector<manualContourModel*> lstManConModExp;
2067 std::vector<double> pLstValue;
2068 std::vector<double> pLstValuePosX;
2069 std::vector<double> pLstValuePosY;
2070 std::vector<double> pLstValuePosZ;
2073 int resultGrayRangeCount;
2076 double resultAverage;
2077 double resultStandardeviation;
2079 std::vector<int> tempVector;
2080 _instantPanel->getInstant( tempVector );
2082 vtkImageData *imagedata = _theViewPanel->getImageData();
2083 int sizeZ = _theViewPanel->GetImageDataSizeZ();
2085 int ii,sizeLstContourThings;
2095 if (selection==0 ) // actual slice
2097 std::vector<int> tempVector;
2098 _instantPanel->getInstant( tempVector );
2099 int actualSlice = tempVector[1];
2103 else if (selection==2 ) // All slices
2108 else if (selection==1 ) // slice range
2115 totalZ = maxZ-minZ+1;
2116 contourextractdata->SetImage( imagedata);
2119 for ( z=minZ ; z<=maxZ ; z++ )
2122 porcent = 100.0* (z-minZ)/totalZ;
2123 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2125 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2126 //_staticTextInformation->SetLabel(tmpString);
2128 //Extraction data from contours of each slice
2129 contourextractdata->SetZtoBeAnalys( z);
2132 Instant instant(&tempVector);
2133 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2134 sizeLstContourThings = lstContourThings.size();
2136 lstManConMod.clear();
2137 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2139 ContourThing **contourthing = lstContourThings[ii];
2140 lstManConMod.push_back( (*contourthing)->getModel() );
2142 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2145 wxString tempString;
2146 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2147 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2148 //_grid->SetRowLabelValue(z, tempString );
2150 int iContourGroup,sizeContourGroup;
2151 if (typeContourGroup==3) // contour separete
2153 sizeContourGroup=lstManConModExp.size();
2154 if ( maxContourGroup<sizeContourGroup )
2156 maxContourGroup=sizeContourGroup;
2158 } else { // contour AND OR XOR
2167 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2168 lstManConModTmp.clear();
2169 if (typeContourGroup==3) // contour separete
2171 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2172 } else { // contour AND OR XOR
2173 lstManConModTmp = lstManConModExp;
2176 contourextractdata->SetLstManualContourModel( lstManConModTmp );
2179 pLstValuePosX.clear();
2180 pLstValuePosY.clear();
2181 pLstValuePosZ.clear();
2182 contourextractdata->GetValuesInsideCrown( &pLstValue,
2186 // Statistics of each slice.
2187 contourextractdata->Statistics( &pLstValue,
2190 &resultGrayRangeCount,
2195 &resultStandardeviation);
2197 if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1) )
2199 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2202 tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2204 tempString.Printf(_T("%d"),resultSize);
2205 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2207 tempString.Printf(_T("%d"),resultGrayRangeCount);
2208 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2210 tempString.Printf(_T("%f"),resultMin);
2211 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2213 tempString.Printf(_T("%f"),resultMax);
2214 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2216 tempString.Printf(_T("%f"),resultAverage);
2217 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2219 tempString.Printf(_T("%f"),resultStandardeviation);
2220 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2223 } // for iContourGroup
2227 wxString tmpTitleString;
2229 for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2231 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2232 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2233 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2235 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2236 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2237 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2238 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2239 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2240 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2241 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2244 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2245 delete contourextractdata;
2248 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){
2249 SaveValuesXYZ( directory , namefile, typeContourGroup );
2251 vtkImageData* mask, *value;
2252 this->getMaskValue(mask, value, typeContourGroup);
2253 this->SaveImageResult( directory , namefile, mask, value);
2256 FILE *pFile=fopen(filename.c_str(),"w+");
2258 int sizeZ = _theViewPanel->GetImageDataSizeZ();
2261 int i,j,maxX,maxY=sizeZ;
2262 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2264 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2265 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2267 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2268 fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2270 fprintf(pFile,"\n" );
2274 for ( j=0; j<maxY ; j++)
2276 fprintf(pFile,"%d\t" , j );
2277 for (i=0 ; i<maxX ; i++){
2278 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2279 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2281 fprintf(pFile,"\n" );
2287 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2290 ContourExtractData *contourextractdata = new ContourExtractData();
2291 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2292 contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2294 std::vector<manualContourModel*> lstManConMod;
2295 std::vector<manualContourModel*> lstManConModTmp;
2296 std::vector<manualContourModel*> lstManConModExp;
2297 std::vector<double> pLstValue;
2298 std::vector<double> pLstValuePosX;
2299 std::vector<double> pLstValuePosY;
2300 std::vector<double> pLstValuePosZ;
2302 std::vector<int> tempVector;
2303 _instantPanel->getInstant( tempVector );
2305 vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2306 int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2308 int ii,sizeLstContourThings;
2315 minZ = 0;// _mbarrange->GetStart();
2316 maxZ = sizeZ;//_mbarrange->GetEnd();
2317 totalZ = maxZ-minZ+1;
2319 contourextractdata->SetImage( imagedata);
2322 for ( z=0 ; z<sizeZ ; z++)
2325 porcent = 100.0* (z-minZ)/totalZ;
2327 tmpString.Printf(_T("Saving Values"));
2328 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2329 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2330 //_staticTextInformation->SetLabel(tmpString);
2333 //Extraction data from contours of each slice
2334 contourextractdata->SetZtoBeAnalys( z);
2337 Instant instant(&tempVector);
2338 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2339 sizeLstContourThings = lstContourThings.size();
2341 lstManConMod.clear();
2342 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2344 ContourThing **contourthing = lstContourThings[ii];
2345 lstManConMod.push_back( (*contourthing)->getModel() );
2347 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2352 int iContourGroup,sizeContourGroup;
2353 if (typeContourGroup==3) // contour separete
2355 sizeContourGroup=lstManConModExp.size();
2356 } else { // contour AND OR XOR
2360 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2361 lstManConModTmp.clear();
2362 if (typeContourGroup==3) // contour separete
2364 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2365 } else { // contour AND OR XOR
2366 lstManConModTmp = lstManConModExp;
2369 contourextractdata->SetLstManualContourModel( lstManConModTmp );
2372 pLstValuePosX.clear();
2373 pLstValuePosY.clear();
2374 pLstValuePosZ.clear();
2375 contourextractdata->GetValuesInsideCrown( &pLstValue,
2380 std::string temp = directory + "/" + namefile + "-slice";
2381 temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2382 temp = temp + ".txt";
2384 // LG 14/01/09 : using crea
2385 wxString filename = crea::std2wx(temp);
2386 /*filename.Printf(_T("%s"),directory.c_str());
2387 filename.append(_T("\\"));
2388 filename.append(_T("%s"),namefile.c_str());
2389 filename.append(_T("-slice"));
2390 filename.append(_T("%d"),z);
2391 filename.append(_T("-cont"));
2392 filename.append(_T("%d"),iContourGroup);
2393 filename.append(_T(".txt"));*/
2394 // filename.Printf(temp.c_str());
2398 FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2399 fprintf(pFile,"value \t x \t y \t z\n" );
2400 int iLstValue,sizeLstValue=pLstValue.size();
2401 for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2403 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2406 } // for iContourGroup
2408 interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2409 //_staticTextInformation->SetLabel( _T("") );
2410 delete contourextractdata;
2413 void wxContourMainFrame::getMaskValue(vtkImageData* mask,vtkImageData* value,int typeContourGroup){
2415 ContourExtractData *contourextractdata = new ContourExtractData( true );
2416 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2417 if (typeContourGroup==3)
2421 contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2423 std::vector<manualContourModel*> lstManConMod;
2424 std::vector<manualContourModel*> lstManConModTmp;
2425 std::vector<manualContourModel*> lstManConModExp;
2427 std::vector<int> tempVector;
2428 _instantPanel->getInstant( tempVector );
2430 vtkImageData *imagedata = _theViewPanel->getImageData();
2431 int sizeZ = _theViewPanel->GetImageDataSizeZ();
2433 int ii,sizeLstContourThings;
2442 minZ = 0;// _mbarrange->GetStart();
2443 maxZ = sizeZ;//_mbarrange->GetEnd();
2444 totalZ = maxZ-minZ+1;
2446 contourextractdata->SetImage( imagedata);
2449 for ( z=0 ; z<sizeZ ; z++)
2452 porcent = 100.0* (z-minZ)/totalZ;
2453 tmpString.Printf(_T("Saving Values"));
2454 tmpString.Printf(_T("%d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2455 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2457 //Extraction data from contours of each slice
2458 contourextractdata->SetZtoBeAnalys( z);
2461 Instant instant(&tempVector);
2462 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2463 sizeLstContourThings = lstContourThings.size();
2465 lstManConMod.clear();
2466 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2468 ContourThing **contourthing = lstContourThings[ii];
2469 lstManConMod.push_back( (*contourthing)->getModel() );
2471 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2474 int iContourGroup,sizeContourGroup;
2475 if (typeContourGroup==3) // contour separete
2477 sizeContourGroup=lstManConModExp.size();
2478 } else { // contour AND OR XOR
2482 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2483 lstManConModTmp.clear();
2484 if (typeContourGroup==3) // contour separete
2486 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2487 } else { // contour AND OR XOR
2488 lstManConModTmp = lstManConModExp;
2491 contourextractdata->SetLstManualContourModel( lstManConModTmp );
2492 contourextractdata->CalculateImageResult(); // with actual Z
2494 } // for iContourGroup
2497 value = contourextractdata->GetVtkImageValueResult();
2498 mask = contourextractdata->GetVtkImageMaskResult();
2499 delete contourextractdata;
2502 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2505 std::string temp = directory + "/" + namefile + "-Value.mhd";
2507 wxString filename = crea::std2wx(temp);
2509 // filename.Printf(_T(temp.c_str()));
2510 //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2511 /*filename.Printf(_T("%s"),directory.c_str());
2512 filename.append(_T("\\"));
2513 filename.append(_T("%s"),namefile.c_str());
2514 filename.append(_T("-Value.mhd"));*/
2517 vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2518 writerValueImage->SetInput( value );
2519 writerValueImage->SetFileName( (const char *)filename.mb_str() );
2520 writerValueImage->SetFileDimensionality( 3 );
2521 writerValueImage->Write( );
2524 // filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2525 temp = directory + "/" + namefile + "-Mask.mhd";
2527 // LG 14/01/09 : using crea
2528 filename = crea::std2wx(temp);
2529 // filename.Printf(_T(temp.c_str()));
2531 /*filename.Printf(_T("%s"),directory.c_str());
2532 filename.append(_T("\\"));
2533 filename.append(_T("%s"),namefile.c_str());
2534 filename.append(_T("-Mask.mhd"));*/
2536 vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2537 writerMaskImage->SetInput( mask );
2538 writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2539 writerMaskImage->SetFileDimensionality( 3 );
2540 writerMaskImage->Write( );
2542 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2548 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2549 if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2550 _theViewPanel->setActualVertical( value);
2552 else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) ) {
2553 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2559 void wxContourMainFrame::onSnakePressed(){
2560 std::vector<double> vecX;
2561 std::vector<double> vecY;
2562 std::vector<double> vecZ;
2563 _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2565 if (vecX.size()!=0){
2566 std::vector<int> tempVector;
2567 _instantPanel->getInstant( tempVector );
2568 int i,size=vecZ.size();
2569 int actualSlice = tempVector[1];
2570 for ( i=0 ; i<size ; i++ )
2572 vecZ[i] = actualSlice;
2575 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2576 wxPanel* panel = new wxPanel(dialog,-1);
2577 // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2578 new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2579 dialog->ShowModal();
2584 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2585 std::string filename = kernelManager->getCurrentFileName();
2586 if(filename.compare("")!=0){
2587 saveFileWithContours(filename);
2592 void wxContourMainFrame::ShowToolsPanel(bool show){
2593 _pannew->Show(show);