lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 //----------------------------------------------------------------------------------------------------------------
  27 // Class definition include
  28 //----------------------------------------------------------------------------------------------------------------
  29 #include "wxContourMainFrame.h"
  30
  31
  32
  33 //----------------------------------------------------------------------------------------------------------------
  34 // Includes
  35 //----------------------------------------------------------------------------------------------------------------
  36
  37
  38 #include "NameWrapper.h"
  39 #include "wx/artprov.h"
  40 #include "ConceptDataWrap.h"
  41 #include <creaWx.h>
  42
  43 #include <string>
  44 using namespace std;
  45
  46 //----------------------------------------------------------------------------------------------------------------
  47 // Class implementation
  48 //----------------------------------------------------------------------------------------------------------------
  49 /** @file wxContourMainFrame.cxx */
  50
  51         //------------------------------------------------------------------------------------------------------------
  52         // Constructors & Destructors
  53         //------------------------------------------------------------------------------------------------------------
  54
  55 wxContourMainFrame* wxContourMainFrame::instance=NULL;
  56 char wxContourMainFrame::COPY = 'C';
  57
  58         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  59                 //: wxPanel(parent, id, title, pos, size, style)
  60                 //: wxWindow(parent, id, pos, size, style)
  61                 : wxPanel(parent, id, pos, size, style)
  62         {
  63                 m_mgr.SetManagedWindow(this);
  64                 _contourGroup                           = 1;
  65                 _creatingContoursActive         = false;
  66                 _theViewPanel                           = NULL;
  67 //              _modelManager                           = NULL;
  68                 _instantPanel                           = NULL;
  69 //              _buttonsBar                                     = NULL;
  70 //              _gridPanel                                      = NULL;
  71 //              _drawToolsPanel                         = NULL;
  72 //              _operationsToolsPanel           = NULL;
  73                 //_autoFormsPanel                       = NULL;
  74 //              _standardToolsPanel                     = NULL;
  75 //              _editionToolsPanel                      = NULL;
  76 //              _listViewPanel                          = NULL;
  77 //              _sceneManager                           = NULL;
  78                 //_actualInstant                        = NULL;
  79                 _numberOfVariablesStatistics= 6+1;
  80
  81                 _refLineControl                         = NULL;
  82                 _refLineModel                           = NULL;
  83                 _refLineView                            = NULL;
  84 //              _actorPresent                           = false;
  85
  86                 // set up default notebook style
  87 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  88 //              m_notebook_theme = 0;
  89                 //wxContour_ActionCommandsID a;
  90
  91                 _contourextractdata                     = NULL;
  92                 _viewMaskImage                          = NULL;
  93                 _viewMaskImagePanel                     = NULL;
  94                 _viewThresholdImage                     = NULL;
  95                 _viewThresholdImagePanel        = NULL;
  96                 _viewColorLayerImagePanel       = NULL;
  97                 _frameShowResultImages          = NULL;
  98         }
  99
 100         wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
 101                 : wxPanel(parent, id, pos, size, style)
 102         {
 103                 m_mgr.SetManagedWindow(this);
 104                 _contourGroup                           = 1;
 105                 _creatingContoursActive         = false;
 106                 _theViewPanel                           = NULL;
 107                 _instantPanel                           = NULL;
 108                 _refLineControl                         = NULL;
 109                 _refLineModel                           = NULL;
 110                 _refLineView                            = NULL;
 111 //              _actorPresent                           = false;
 112                 _viewMaskImage                          = NULL;
 113                 _viewMaskImagePanel                     = NULL;
 114                 _viewThresholdImage                     = NULL;
 115                 _viewThresholdImagePanel        = NULL;
 116                 _viewColorLayerImagePanel       = NULL;
 117                 // set up default notebook style
 118                 m_notebook_style                        = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
 119                 m_notebook_theme                        = 0;
 120                 //wxContour_ActionCommandsID a;
 121                 _numberOfVariablesStatistics= 7;
 122                 _datadir                                        = datadir;
 123                 inredo                                          = 0;
 124                 inundo                                          = 0;
 125                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
 126                 _performingOperation        = new PerformingOperation();
 127                 if(images.size() > 0)
 128                 {
 129                         this->configure(images);
 130                 }
 131                 _contourextractdata                     = NULL;
 132 }
 133
 134
 135 void wxContourMainFrame::changeImage(int id, vtkImageData *img)
 136 {
 137     if ( id<_images.size() ) _images[id]=img;
 138     kernelManager->changeImage(id,img);
 139     _theViewPanel->changeImage(img);
 140 //    updateInstantImageData();
 141
 142 }
 143
 144 void wxContourMainFrame::configure(std::vector<vtkImageData*> imgs)
 145 {
 146         _images = imgs;
 147         #if defined(_WIN32)
 148                 std::string str_home(getenv("USERPROFILE"));
 149         #elif defined(__GNUC__)
 150                 std::string str_home(getenv("HOME"));
 151         #endif
 152         std::string                             strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 153         std::vector<std::string>        conceptNameVect;
 154         std::vector<int>                        conceptSizeVect;
 155         notebook                = this->createNotebook();
 156         kernelManager   = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
 157         _instantPanel   = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 158         _theViewPanel   = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 159 //-------------------------------------------------------------
 160         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 161         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 162         double val = _theViewPanel->getCurrentDeep();
 163         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 164         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 165         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 166         //*******************changeInstant();
 167         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 168         this->configurePanels( );
 169 }
 170
 171
 172         wxContourMainFrame* wxContourMainFrame::getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
 173         {
 174                 if(instance == NULL)
 175                 {
 176                         instance=new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 177                 }
 178                 return instance;
 179         }
 180
 181         std::vector<vtkImageData*> wxContourMainFrame::getVectImages()
 182         {
 183                 return kernelManager->getVectImages();
 184         }
 185
 186         wxContourMainFrame* wxContourMainFrame::getInstance()
 187         {
 188                 return instance;
 189         }
 190
 191         void wxContourMainFrame::resetInstance()
 192         {
 193                 instance->Destroy();
 194         }
 195
 196         wxContourMainFrame::~wxContourMainFrame()
 197         {
 198                 delete _contourextractdata;
 199                 deleteAllContours();
 200                 _pannew->Close();
 201                 interfMainPanel::resetInstance();
 202                 delete kernelManager;
 203                 instance = NULL;
 204                 //_pannew->Destroy();
 205                 //delete _pannew;
 206
 207                 m_mgr.UnInit();
 208                 //delete m_mgr;
 209
 210                 //El problema al cerrar la aplicacion puede estar asociado
 211                 //a que  wxAUINotebook esta en la aplicacion
 212                 //principal (wxContourGUIExample)tambien
 213                 //EED????               delete _theViewPanel;
 214                 //EED????               delete _instantPanel;
 215                 //EED????               delete _buttonsBar;
 216                 //EED????               delete _actualInstant;
 217                 //EED????               delete _sceneManager;
 218         }
 219
 220
 221         //------------------------------------------------------------------------------------------------------------
 222         // Creational and initialization methods using WxAui
 223         //------------------------------------------------------------------------------------------------------------
 224         //
 225         wxAuiNotebook * wxContourMainFrame::createNotebook()
 226         {
 227                 wxSize client_size      = GetClientSize();
 228                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 229                 wxBitmap page_bmp       = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 230                 return noteBook;
 231         }
 232
 233
 234         //------------------------------------------------------------------------------------------------------------
 235         // Creational and initialization methods
 236         //------------------------------------------------------------------------------------------------------------
 237         bool wxContourMainFrame::configurePanels( )
 238         {
 239                 bool configured = _theViewPanel!=NULL;
 240
 241                 configured &= _theViewPanel!=NULL;
 242                 if( _theViewPanel!=NULL )
 243                 {
 244                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 245                         m_mgr.Update();
 246                 }
 247                 if( configured )
 248                 {
 249                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 250                         m_mgr.Update();
 251                 }
 252                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 253                 m_mgr.Update();
 254                 SetMinSize(wxSize(300,300));
 255                 m_mgr.Update();
 256                 return configured;
 257         }
 258
 259
 260         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 261                 {
 262                 bool configured = panel!=NULL;
 263                 configured &= panel!=NULL;
 264
 265                 if( configured )
 266                 {
 267                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 268                         m_mgr.Update();
 269                 }
 270                 return configured;
 271         }
 272
 273         //------------------------------------------------------------------------------------------------------------
 274         //  Attributes getters and setters
 275         //------------------------------------------------------------------------------------------------------------
 276
 277
 278
 279         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 280         {
 281                 _instantPanel = theInstantChooserPanel;
 282         }
 283
 284 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 285 //      {
 286 //              _buttonsBar = theButtonsBar;
 287 //      }
 288
 289 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 290 //      {
 291 //              _gridPanel = theGridPanel;
 292 //      }
 293
 294 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 295 //      {
 296 //              _drawToolsPanel = theDrawToolsPanel;
 297 //      }
 298
 299 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 300 //      {
 301 //              _operationsToolsPanel = theOperationsToolsPanel;
 302 //      }
 303
 304 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 305 //      {
 306 //              _autoFormsPanel = theAutoFormsPanel;
 307 //      }
 308
 309 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 310 //      {
 311 //              _standardToolsPanel= theStandardToolsPanel;
 312 //      }
 313
 314 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 315 //      {
 316 //              _editionToolsPanel =  theEditionToolsPanel;
 317 //      }
 318
 319 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 320 //      {
 321 //              _listViewPanel = theListViewPanel;
 322 //      }
 323
 324
 325
 326 void wxContourMainFrame::onCreateContourSpline( ){
 327
 328         //JCP 20-10-08 Undo redo implementation
 329         saveState();
 330         //JCP 20-10-08 Undo redo implementation
 331         createContour( 1 );
 332
 333 }
 334
 335 void wxContourMainFrame::onCreateContourRectangle( )
 336 {
 337     //JCP 20-10-08 Undo redo implementation
 338         saveState();
 339         //JCP 20-10-08 Undo redo implementation
 340         createContour( 2 );
 341 }
 342
 343 void wxContourMainFrame::onCreateContourCircle( )
 344 {
 345     //JCP 20-10-08 Undo redo implementation
 346         saveState();
 347         //JCP 20-10-08 Undo redo implementation
 348         createContour( 3 );
 349 }
 350
 351 void wxContourMainFrame::onCreateContourLine( )
 352 {
 353     //JCP 20-10-08 Undo redo implementation
 354         saveState();
 355         //JCP 20-10-08 Undo redo implementation
 356         createContour( 6 );
 357 }
 358
 359 // RaC 09-09 --------------------------------------
 360 void wxContourMainFrame::onCreateContourPoints( )
 361 {
 362     //JCP 20-10-08 Undo redo implementation
 363         saveState();
 364         //JCP 20-10-08 Undo redo implementation
 365         createContour( 7 );
 366 }
 367 // RaC 09-09 --------------------------------------
 368
 369 // RaC 10-09 --------------------------------------
 370 void wxContourMainFrame::onCreateContourPolygon( )
 371 {
 372     //JCP 20-10-08 Undo redo implementation
 373         saveState();
 374         //JCP 20-10-08 Undo redo implementation
 375         createContour( 10 );
 376 }
 377 // RaC 10-09 --------------------------------------
 378
 379 //------------------------------------------------------------------------------------------------------------
 380
 381 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 382 {
 383         //Creating the manualBaseModel and including in the model
 384         manualBaseModel * manModelContour = factoryManualContourModel(panel );
 385
 386         std::vector<int> instantVector;
 387         _instantPanel->getInstant( instantVector );
 388         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 389
 390         /*std::vector<int> instantVector;
 391         _instantPanel->getInstant( instantVector );
 392         std::string theName;
 393         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 394         bool addedModel = theName.compare("") != 0;//??
 395
 396         if( addedModel )
 397         {
 398                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 399                 _theViewPanel->getSpacing(spc);
 400                 //Adding the manualContourControler to interface objects structure
 401                 //Adding the manualViewContour to interface objects structure
 402                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 403                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 404         }
 405 }
 406
 407 void wxContourMainFrame::createContour( int typeContour )
 408 {
 409         //Creating the manualContourModel and including in the model
 410         manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 411         std::vector<int> instantVector;
 412         _instantPanel->getInstant( instantVector );
 413
 414         std::vector<int> tempVector;
 415         getInstantVector( tempVector );
 416         manModelContour->SetLabel2( std::to_string(tempVector[1]) );
 417
 418         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 419         /*std::vector<int> instantVector;
 420         _instantPanel->getInstant( instantVector );
 421         std::string theName;
 422         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 423         bool addedModel = theName.compare("") != 0;//??
 424         if( addedModel )
 425         {
 426                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 427                 _theViewPanel->getSpacing(spc);
 428                 //Adding the manualContourControler to interface objects structure
 429                 //Adding the manualViewContour to interface objects structure
 430                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 431                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 432         } // if addedModel
 433 }
 434
 435 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 436
 437         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 438         manualBaseModel *manModelContour=NULL;
 439         manModelContour = manModelContourBullEye;
 440         if (panel!=NULL){
 441                 int iCrown,sizeCrowns,iSector,sizeSectors;
 442                 double radioA,radioB,ang,angDelta ;
 443                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 444                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 445                 {
 446                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 447                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 448                         if (iCrown==sizeCrowns-1)
 449                         {
 450                                 radioA  = 0;
 451                         } else {
 452                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 453                         }
 454                         radioA=radioA/100.0;
 455                         radioB=radioB/100.0;
 456                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 457                         {
 458                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 459                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 460                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 461                         } // for iSector
 462                 } // for iCrown
 463         } // if _panelBullEyeOptions
 464
 465         return manModelContour;
 466 }
 467
 468 void wxContourMainFrame :: saveState()
 469 {
 470         std::string temp = kernelManager->saveState();
 471         saveFileWithContours(temp);
 472 }
 473
 474 void wxContourMainFrame::onDeleteContour()
 475 {
 476         //JCP 20-10-08 Undo redo implementation
 477                 saveState();
 478                 //JCP 20-10-08 Undo redo implementation
 479
 480                 std::vector<std::string> lstKeyNameToBeErase;
 481                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 482                 deleteContours( lstKeyNameToBeErase );
 483 /*JCP 19 - 11 - 08
 484                 int i,size=_sceneManager->getSelectedObjects().size();
 485                 for(i=0;i<size;i++)
 486                 {
 487                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 488                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 489                         if ( ispartofstaticlist>=0 )
 490                         {
 491                                 std::vector<int> tempVector;
 492                                 _instantPanel->getInstant( tempVector );
 493                                 Instant instant(&tempVector);
 494                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 495                         }
 496                 }
 497
 498                 std::vector<std::string> lstKeyName;
 499                 std::vector<std::string> lstKeyNameActualSlice;
 500                 std::vector<std::string> lstKeyNameToBeErase;
 501
 502                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 503                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 504                 int k,kSize=lstKeyNameToBeErase.size();
 505                 int j,jSize=lstKeyNameActualSlice.size();
 506                 bool ok;
 507                 for (k=0;k<kSize; k++)
 508                 {
 509                         ok=false;
 510                         for (j=0;j<jSize; j++)
 511                         {
 512                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 513                                 {
 514                                         ok=true;
 515                                 }
 516                         } // for j
 517                         if (ok==true)
 518                         {
 519                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 520                         } // if ok
 521                 } // for k
 522
 523                 deleteContours( lstKeyName );
 524 JCP 19 - 11 - 08*/
 525 }
 526
 527 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 528 {
 529         int i,size=keyNamesVector.size();
 530         for (i=0;i<size;i++)
 531         {
 532                 deleteContour( keyNamesVector[i] );
 533         }
 534 }
 535
 536 void wxContourMainFrame :: deleteContour( std::string theKeyName )
 537 {
 538         /*
 539         manualContourModel                      * cModel;
 540         manualViewBaseContour           * cViewer;
 541         manualContourBaseControler      * cControler;
 542
 543         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 544         cControler      = conwrapviewControl->getControler();*/
 545
 546         //JCP 21 - 11 - 2008
 547         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 548         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 549
 550         if (isedit  && ispartofstaticlst)
 551         {
 552                 _theViewPanel->removeFromScene(theKeyName);
 553
 554                 kernelManager->deleteCModel(theKeyName);
 555                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 556                 //cViewer               = conwrapviewControl->getViewer();
 557                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 558                 //cControler* conwrapviewControl->getControler();
 559         //      delete cModel;
 560         //      delete cViewer;
 561         //      delete cControler;
 562         } // if editable
 563 //JCP 21 - 11 - 08
 564 }
 565
 566 void wxContourMainFrame::onDeleteContoursActSlice()
 567 {
 568         //JCP 20-10-08 Undo redo implementation
 569         saveState();
 570         //JCP 20-10-08 Undo redo implementation
 571
 572         std::vector<int> tempVector;
 573         getInstantVector( tempVector );
 574         deleteContours( getOutlinesName( tempVector[1] ) );
 575 //      deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 576
 577 }
 578 void wxContourMainFrame::onDeleteAllContours(){
 579         //JCP 20-10-08 Undo redo implementation
 580         saveState();
 581         deleteAllContours();
 582 }
 583 void wxContourMainFrame::deleteAllContours(){
 584         //JCP 20-10-08 Undo redo implementation
 585
 586         wxBusyCursor wait;
 587         std::vector<int> tempVector;
 588         _instantPanel->getInstant( tempVector );
 589
 590 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 591 //              the values in GetStart and GetEnd will then not be initialize also.
 592 //              We use instead the values given when initializing the _deletepanel.
 593
 594         //int minZ = _mbarrangeDeleteAll->GetStart();
 595         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 596         int minZ, maxZ;
 597
 598         minZ = 0;
 599         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 600
 601 //JCP --08-09-2008
 602
 603         _theViewPanel->getSceneManager()->removeSceneContours( );
 604         _theViewPanel->getSceneManager()->removeAllOutlines();
 605         kernelManager->removeAllOutlines();
 606 //JCP --08-09-2008
 607         /*
 608         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 609         {
 610                 _theViewPanel->getSceneManager()->removeSceneContours( );
 611                 _modelManager->removeAllOutlines();
 612                 _theViewPanel->getSceneManager()->removeAllOutlines();
 613
 614         } else {
 615                 for ( z=minZ ; z<=maxZ ; z++)
 616                 {
 617                         tempVector[1]=z;
 618                         Instant instant(&tempVector);
 619                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 620
 621                         sizeLstContourThings = lstContourThings.size();
 622                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 623                         {
 624                                 ContourThing **contourthing = lstContourThings[ii];
 625                                 deleteContour( (*contourthing)->getName() );
 626                         } //for ii
 627                 }// for z
 628         } // if
 629 JCP --08-09-2008 */
 630 }
 631
 632 void wxContourMainFrame::setConceptValue( std::string name, int value )
 633 {
 634         _instantPanel->setConceptValue(name, value);
 635 }
 636
 637
 638 ConceptDataWrap* wxContourMainFrame::getLastConceptData()
 639 {
 640         return _instantPanel->getLastConceptData();
 641 }
 642
 643
 644 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
 645 {
 646         return _instantPanel->getIfConceptCheckedAt( name, pos );
 647 }
 648
 649
 650
 651 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
 652 {
 653         vtkImageData * mask;
 654         vtkImageData * value;
 655         this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
 656
 657         std::vector<int> nTypeView;
 658         nTypeView.push_back(5);
 659         nTypeView.push_back(1);
 660         nTypeView.push_back(2);
 661         nTypeView.push_back(0);
 662
 663         if (_frameShowResultImages==NULL)
 664         {
 665 //              wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
 666                 _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
 667                      wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION |  wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER  );
 668
 669                 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
 670                 m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
 671
 672                 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
 673                 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 674
 675                 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
 676                 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
 677
 678
 679                 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
 680                 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
 681                 m_mgr_noteBookViewerResult->Update();
 682                 _frameShowResultImages->Show();
 683         } // if _frameShowResultImages
 684 }
 685
 686
 687
 688
 689 void wxContourMainFrame::changeInstant()
 690 {
 691                 std::vector<int> instantVect;
 692                 _instantPanel->getInstant( instantVect );
 693                 int actualSlice = instantVect[1];
 694                 kernelManager->setInstant(instantVect);
 695             // Refresh Mask image
 696                 if(_viewMaskImage!=NULL)
 697                 {
 698                         _viewMaskImage->SetZ(actualSlice);
 699                         if (_viewMaskImagePanel->IsVisible()==true)
 700                         {
 701                                 vtkImageData *mask, *value;
 702                                 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
 703                                 _viewMaskImage->onThreshold();
 704                         }
 705                 } // if _viewMaskImage
 706         // Refresh Threshold image
 707                 if(_viewThresholdImage!=NULL)
 708                 {
 709                         _viewThresholdImage->SetZ(actualSlice);
 710                         if (_viewThresholdImagePanel->IsVisible()==true)
 711                         {
 712                                 _viewThresholdImage->onThreshold();
 713                         }
 714                 } // if _viewThresholdImage
 715                 updateInstantOutlines();
 716                 updateInstantImageData();
 717                 updateInstantAxes();
 718 }
 719
 720
 721
 722 void wxContourMainFrame::updateInstantOutlines()
 723 {
 724         _theViewPanel->removeSceneContours();
 725         _theViewPanel->addNameWrapperToScene();
 726
 727         //for( int i=0; i<size; i++)
 728         //{
 729         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 730         //}
 731 }
 732
 733 int wxContourMainFrame::getNamesWrappingSize()
 734 {
 735         return kernelManager->getNamesWrappingSize();
 736 }
 737
 738 std::string wxContourMainFrame::getNameWrapping(int i)
 739 {
 740         return kernelManager->getNameWrapping(i);
 741 }
 742
 743 void wxContourMainFrame::updateInstantImageData()
 744 {
 745         std::vector<int> inst;
 746         _instantPanel->getInstant(inst);
 747         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 748         if(img!=NULL)
 749         {
 750                 _theViewPanel->changeImage(img);
 751                 showAxis(false);
 752         }else{
 753                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 754                 _theViewPanel->setImageSlice(z);
 755         } // if img
 756 }
 757
 758 void wxContourMainFrame::updateInstantAxes()
 759 {
 760 }
 761
 762
 763 void wxContourMainFrame::onChangeDeep(int val){
 764         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 765         changeInstant();
 766 }
 767
 768
 769 void wxContourMainFrame::onCopy(){
 770         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 771         std::vector<int> tempVector;
 772         _instantPanel->getInstant( tempVector );
 773     _performingOperation->reset();
 774         _performingOperation->setStartCommand( COPY );
 775         _performingOperation->setStartOperationInstantVector( tempVector );
 776         _performingOperation->setKeyNamesOperationElems( currentSelection );
 777 }
 778
 779 void wxContourMainFrame::onPaste()
 780 {
 781         char theStartCommand = _performingOperation->getStartCommand();
 782         if (  theStartCommand == COPY )
 783         {
 784                 //JCP 20-10-08 Undo redo implementation
 785                 saveState();
 786                 //JCP 20-10-08 Undo redo implementation
 787                 std::vector<int> tempVector;
 788                 _instantPanel->getInstant( tempVector );
 789                 _performingOperation->setEndOperationInstantVector ( tempVector );
 790                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 791                 int i,size = elems.size();
 792                 for( i=0; i<size; i++ )
 793                 {
 794                         createCopyContourOf( elems[i], tempVector, i>0 );
 795                 }
 796         }
 797 }
 798
 799 void wxContourMainFrame::onUndo()
 800 {
 801         std::string filename;
 802         if(kernelManager->onUndoSaveFile(filename)){
 803                 saveFileWithContours(filename);
 804         }
 805         if(kernelManager->onUndo(filename)){
 806                 loadState(filename);
 807         }
 808 }
 809 void wxContourMainFrame::onRedo(){
 810         std::string filename;
 811         if(kernelManager->onRedo(filename)){
 812                 loadState(filename);
 813         }
 814
 815 }
 816 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 817 {
 818         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 819         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 820         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 821 }
 822
 823 ///AD: 03-09    Copy the object and apply the given transformation
 824 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 825 {
 826         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 827         manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 828
 829         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 830         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 831
 832         double pnt1X = refPoint1->GetX();
 833         double pnt1Y = refPoint1->GetY();
 834 //      double pnt1Z = refPoint1->GetZ();
 835         double pnt2X = refPoint2->GetX();
 836         double pnt2Y = refPoint2->GetY();
 837 //      double pnt2Z = refPoint2->GetZ();
 838
 839         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 840         vtkTransform *t = vtkTransform::New();
 841
 842         t->PostMultiply();
 843         t->Identity();
 844         t->Translate(-pnt1X, -pnt1Y, 0);
 845         t->RotateZ(-angle);
 846         t->Scale(-1,1,1);
 847         t->RotateZ(angle);
 848         t->Translate(pnt1X, pnt1Y, 0);
 849         t->Update();
 850
 851         int i,size=manualModel->GetSizeLstPoints();
 852         for (i=0;i<size;i++)
 853         {
 854                 manualPoint * mp = manualModel->GetManualPoint(i);
 855                 float vecIn[3];
 856                 float vecOut[3];
 857                 vecIn[0]=mp->GetX();
 858                 vecIn[1]=mp->GetY();
 859                 vecIn[2]=mp->GetZ();
 860                 t->TransformPoint( vecIn, vecOut );
 861                 mp->SetPointX( vecOut[0] );
 862                 mp->SetPointY( vecOut[1] );
 863                 mp->SetPointZ( vecOut[2] );
 864         } // for i
 865
 866         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 867 }
 868
 869 void wxContourMainFrame ::loadState(std::string filename)
 870 {
 871         deleteAllContours();
 872         onLoadContours(filename,false);
 873 }
 874
 875 void wxContourMainFrame::onLoad(bool interactiveInterface)   // interactiveInterface default true
 876 {
 877         std::string fileNameContourROI = GetFileLocation();
 878 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
 879         if(GetFileLocation().empty())
 880         {
 881 //------------------------------------------------------------------------------------------------------------
 882 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 883 #if wxMAJOR_VERSION <= 2
 884                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 885 #else
 886                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
 887 #endif
 888                 if (dialog.ShowModal() == wxID_OK)
 889                 {
 890                         fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 891                 } // if dialog
 892         } // if FileLocation
 893         onLoadContours(fileNameContourROI, interactiveInterface );
 894 }
 895
 896 void  wxContourMainFrame::SetZForAllContours(int pz)
 897 {
 898         //-- Normal Contours
 899         std::vector< std::string > lstNameThings;
 900         int i,sizeLstNameThings;
 901         int ii,sizeLstPoints;
 902         lstNameThings           = kernelManager->GetLstNameThings();
 903         sizeLstNameThings       = lstNameThings.size();
 904         for (i=0 ; i<sizeLstNameThings ; i++)
 905         {
 906                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 907                 sizeLstPoints = manualModel->GetSizeLstPoints();
 908                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 909                 {
 910                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 911                 }// for ii  list of points
 912         }// for i  list of Things
 913
 914         //-- Static Contours
 915
 916         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 917         sizeLstNameThings       = lstNameThings.size();
 918         for (i=0 ; i<sizeLstNameThings ; i++)
 919         {
 920                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
 921                 sizeLstPoints = manualModel->GetSizeLstPoints();
 922                 for (ii=0 ; ii<sizeLstPoints ; ii++)
 923                 {
 924                          manualModel->GetManualPoint(ii)->SetPointZ(-900);
 925                 }// for ii  list of points
 926         }// for i  list of static things
 927 }
 928
 929 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
 930 {
 931         char tmp[255];
 932         char tmpD[255];
 933         FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
 934 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
 935         if(pFile != NULL)
 936         {
 937 //------------------------------------------------------------------------------------------------------------
 938         fileNameContourROI.append("data");
 939                 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
 940                 if(pFileData != NULL)
 941                 {
 942                         fscanf(pFileData,"%s",tmpD); // --CreaContour--
 943                         fscanf(pFileData,"%s",tmpD); // Version
 944                         fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 945
 946                         fscanf(pFileData,"%s",tmpD); // onePixelSize
 947                         fscanf(pFileData,"%s",tmpD); // #
 948                         _onePixelSize = atof(tmpD);
 949                         fscanf(pFileData,"%s",tmpD); // NumberOfContours
 950                         fscanf(pFileData,"%s",tmpD); // #
 951                 }
 952                 fscanf(pFile,"%s",tmp); // --CreaContour--
 953                 fscanf(pFile,"%s",tmp); // Version
 954                 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
 955                 std::string version(tmp);
 956                 //AD:02-06-09
 957         _tmpReadFileTypeOfTransformation=-1;
 958                 if (version=="1.0.3")
 959                 {
 960                     readDimSpc(pFile,interactiveInterface);   // DimSpc interactive ON
 961                         openContours(pFile,pFileData,false);
 962                         openContours(pFile,pFileData,true);     //Load StaticContours
 963                 }
 964                 if (version=="1.0.2")
 965                 {
 966 //EED001
 967                         readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
 968                         openContours(pFile,pFileData,false);
 969                         readDimSpc(pFile,false);                // DimSpc interactive OFF
 970                         openContours(pFile,pFileData,true);     // Load StaticContours
 971                         SetZForAllContours(-900);
 972                 } else if (version=="1.0.1") { //AD:02-06-09
 973                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 974                         openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
 975                 } else if (version=="1.0.0") { //AD:02-06-09
 976                         openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
 977                 }
 978                 fclose(pFile);
 979                 if(pFileData != NULL)
 980                 {
 981                         fclose(pFileData);
 982                 } // if
 983         } // pFile
 984         _theViewPanel->getSceneManager()->removeSceneContours();
 985         changeInstant();
 986 }
 987
 988
 989 void wxContourMainFrame::onImport()
 990 {
 991         std::string filename, filenamecontours;
 992 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
 993 #if wxMAJOR_VERSION <= 2
 994         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
 995 #else
 996         wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
 997 #endif
 998         if (dialog.ShowModal() == wxID_OK)
 999         {
1000                 filename = dialog.GetPath().mb_str();
1001                 filenamecontours = kernelManager->parseOsirixFile(filename);
1002
1003                 if(filenamecontours.compare("") != 0)
1004                 {
1005                         onLoadContours(filenamecontours,true);
1006                 } // if
1007         } // if
1008 }
1009
1010 void wxContourMainFrame::onTest()
1011 {
1012         std::string filename, filenamecontours;
1013 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1014 #if wxMAJOR_VERSION <= 2
1015         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1016 #else
1017         wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
1018 #endif
1019         if (dialog.ShowModal() == wxID_OK)
1020         {
1021                 filename = dialog.GetPath().mb_str();
1022                 std::cout << "This is the filename: " << filename << std::endl;
1023         } // if
1024 }
1025
1026 //AD: 29-05-09
1027 void wxContourMainFrame::onSave()
1028 {
1029 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1030         if(GetFileLocation().empty())
1031         {
1032 //------------------------------------------------------------------------------------------------------------
1033 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1034 #if wxMAJOR_VERSION <= 2
1035                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1036 #else
1037                 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
1038 #endif
1039                 if (dialog.ShowModal() == wxID_OK)
1040                 {
1041                         std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1042                         kernelManager->setCurrentFileName(fileNameContourROI);
1043                         saveFileWithContours( fileNameContourROI );
1044                 }
1045         } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
1046                 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1047                 std::string fileNameContourROI = GetFileLocation();
1048                 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1049                 kernelManager->setCurrentFileName(fileNameContourROI);
1050                 saveFileWithContours( fileNameContourROI);
1051         }
1052 //------------------------------------------------------------------------------------------------------------
1053 }
1054
1055 //AD: 29-05-09
1056 void wxContourMainFrame::saveFileWithContours( std::string filename )
1057 {
1058
1059         FILE *pFile=fopen(filename.c_str(),"w+");
1060
1061 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1062         filename.append("data");
1063         std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1064         FILE *pFileData=fopen(filename.c_str(),"w+");
1065 //------------------------------------------------------------------------------------------------------------
1066
1067         std::vector< std::string > lstNameThings;
1068         int i,sizeLstNameThings;
1069
1070         fprintf(pFile,"--CreaContour--\n");
1071         fprintf(pFile,"Version %s\n", "1.0.3" );
1072
1073 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1074         fprintf(pFileData,"--CreaContour--\n");
1075         fprintf(pFileData,"Version %s\n", "1.0.3" );
1076         fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1077 //------------------------------------------------------------------------------------------------------------
1078         vtkImageData *image = _images[0];
1079         int dimRange[3];
1080         image->GetDimensions(dimRange);
1081         fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1082         double spaRange[3];
1083         image->GetSpacing(spaRange);
1084         fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1085         // Normal Contours
1086         lstNameThings           = kernelManager->GetLstNameThings();
1087         sizeLstNameThings       = lstNameThings.size();
1088         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1089 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1090         fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1091 //------------------------------------------------------------------------------------------------------------
1092 // EED 2017-05-30
1093         double spc[3];
1094         spc[0]=1;
1095         spc[1]=1;
1096         spc[2]=1;
1097         for (i=0 ; i<sizeLstNameThings ; i++)
1098         {
1099 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1100                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1101 // EED 2017-05-30
1102 //              double sizeInPixel = manualModel ->GetPathSize(  );
1103                 double sizeInPixel = manualModel ->GetPathSize( spc );
1104                 double realContourSize = sizeInPixel*_onePixelSize;
1105                 manualModel ->SetRealSize(realContourSize);
1106 //------------------------------------------------------------------------------------------------------------
1107         //int size= kernelManager->GetLstNameThings().size();
1108                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1109                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1110         }// for i
1111         //-- Static Contours
1112 //      fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1113 //      fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1114         lstNameThings           = kernelManager->GetLstNameThingsStatic();
1115         sizeLstNameThings       = lstNameThings.size();
1116         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1117 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1118         fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1119 //------------------------------------------------------------------------------------------------------------
1120         for (i=0 ; i<sizeLstNameThings ; i++)
1121         {
1122                 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1123                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1124         }// for i
1125         fclose(pFile);
1126         fclose(pFileData);
1127 }
1128
1129
1130 //EED02
1131 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1132 {
1133         char tmp[255];
1134         int             imageDim[3];
1135         double          imageSpac[3];
1136         vtkImageData    *image          = _images[0];
1137     image->GetDimensions(imageDim);
1138     image->GetSpacing(imageSpac);
1139
1140     fscanf(pFile,"%s",tmp); // ImageDimensions
1141     fscanf(pFile,"%s",tmp); // X
1142     _tmpReadFileImageDim[0] = atoi(tmp);
1143     fscanf(pFile,"%s",tmp); // Y
1144     _tmpReadFileImageDim[1] = atoi(tmp);
1145     fscanf(pFile,"%s",tmp); // Z
1146     _tmpReadFileImageDim[2] = atoi(tmp);
1147
1148     fscanf(pFile,"%s",tmp); // ImageSpacing
1149     fscanf(pFile,"%s",tmp); // X
1150     _tmpReadFileImageSpac[0] = atof(tmp);
1151     fscanf(pFile,"%s",tmp); // Y
1152     _tmpReadFileImageSpac[1] = atof(tmp);
1153     fscanf(pFile,"%s",tmp); // Z
1154     _tmpReadFileImageSpac[2] = atof(tmp);
1155
1156
1157         if (interactiveOption==true)
1158     {
1159                 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1160                 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1161                 {
1162                         wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
1163                         wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1164 //                      wxBoxSizer              *dialSizer = new wxBoxSizer(wxVERTICAL);
1165                         wxFlexGridSizer *dialSizer = new wxFlexGridSizer(1);
1166
1167                         wxString lstOptOperation[3];
1168                         lstOptOperation[0]=_T("By Dimension (XY)");
1169                         lstOptOperation[1]=_T("By Spacing   (XY)");
1170                         lstOptOperation[2]=_T("By Spacing   (XYZ)");
1171                         wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(370,200), 3 , lstOptOperation,  3, wxRA_SPECIFY_ROWS);
1172
1173                         dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the "))  , 0, wxGROW );
1174                         dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?"))  , 0, wxGROW );
1175                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1176                         dialSizer->Add(radioOpts,0,wxGROW);
1177                         dialSizer->Add( new wxStaticText(dial,-1,_T(" "))  , 0, wxGROW );
1178                         dialSizer->Add(buttonsSizer,0,wxGROW);
1179                         dial->SetSizer(dialSizer, true);
1180                         dial->Layout();
1181                         dial->ShowModal();
1182
1183                         _tmpReadFileTypeOfTransformation = -1;
1184 //EED                   bool transform = false;
1185
1186                         if (dial->GetReturnCode() == wxID_OK)
1187                         {
1188                                 _tmpReadFileTypeOfTransformation    = radioOpts->GetSelection();
1189                         }// if wxOK
1190
1191                 } // if dim spc
1192     } // if interactiveOption
1193 }
1194
1195
1196
1197
1198 //AD:04-06-09
1199 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1200 {
1201         char tmp[255];
1202
1203         vtkImageData    *image = _images[0];
1204
1205         int             imageDim[3];
1206         double          imageSpac[3];
1207     image->GetDimensions(imageDim);
1208     image->GetSpacing(imageSpac);
1209
1210
1211         fscanf(pFile,"%s",tmp); // NumberOfContours
1212         fscanf(pFile,"%s",tmp); // ##
1213         int numberOfContours = atoi(tmp);
1214
1215         std::vector<int> instantVector;
1216         int typeContourModel;
1217         manualBaseModel *manModelContour;
1218         int typeView;
1219
1220 /*
1221         if (compatible==true)
1222         {
1223                 int i;
1224                 for (i=0;i<numberOfContours;i++)
1225                 {
1226                         instantVector.clear();
1227                         fscanf(pFile,"%s",tmp); // Instant
1228
1229                         fscanf(pFile,"%s",tmp); // 1
1230                         instantVector.push_back( atoi(tmp) );
1231                         fscanf(pFile,"%s",tmp); // 2
1232                         instantVector.push_back( atoi(tmp) );
1233                         fscanf(pFile,"%s",tmp); // 3
1234                         instantVector.push_back( atoi(tmp) );
1235                         fscanf(pFile,"%s",tmp); // 4
1236                         instantVector.push_back( atoi(tmp) );
1237                         fscanf(pFile,"%s",tmp); // 5
1238                         instantVector.push_back( atoi(tmp) );
1239                         fscanf(pFile,"%s",tmp); // 6
1240                         instantVector.push_back( atoi(tmp) );
1241
1242
1243                         fscanf(pFile,"%s",tmp); // TypeContourModel
1244                         fscanf(pFile,"%s",tmp); // ##
1245                         typeContourModel = atoi(tmp);
1246
1247                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1248                         manModelContour->Open(pFile);
1249                         if(pFileData != NULL)
1250                         {
1251                                 manModelContour->OpenData(pFileData);
1252                         }
1253
1254                         fscanf(pFile,"%s",tmp); // TypeView
1255                         fscanf(pFile,"%s",tmp); // ##
1256                         typeView = atoi(tmp);
1257
1258                         std::string theName;
1259                         theName = kernelManager->createOutline( manModelContour, instantVector );
1260                         bool addedModel = theName.compare("") != 0;
1261                         if( addedModel )
1262                         {
1263                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1264                                 _theViewPanel->getSpacing(spc);
1265                                 //Adding the manualContourControler to interface objects structure
1266                                 //Adding the manualViewContour to interface objects structure
1267                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1268                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1269                         }
1270
1271                         if (staticContour) //StaticContours (will appear in all slices)
1272                         {
1273                                 Instant instant(&instantVector);
1274                                 kernelManager->changeContourOfManager( theName , &instant );
1275                         }
1276
1277                 }// for  numberOfContours
1278         }
1279
1280         else if (compatible==false)
1281         {
1282 */
1283
1284                 int i;
1285                 for (i=0;i<numberOfContours;i++)
1286                 {
1287                         instantVector.clear();
1288                         fscanf(pFile,"%s",tmp); // Instant
1289
1290                         fscanf(pFile,"%s",tmp); // 1
1291                         instantVector.push_back( atoi(tmp) );
1292                         fscanf(pFile,"%s",tmp); // 2
1293                         instantVector.push_back( atoi(tmp) );
1294                         fscanf(pFile,"%s",tmp); // 3
1295                         instantVector.push_back( atoi(tmp) );
1296                         fscanf(pFile,"%s",tmp); // 4
1297                         instantVector.push_back( atoi(tmp) );
1298                         fscanf(pFile,"%s",tmp); // 5
1299                         instantVector.push_back( atoi(tmp) );
1300                         fscanf(pFile,"%s",tmp); // 6
1301                         instantVector.push_back( atoi(tmp) );
1302
1303                         fscanf(pFile,"%s",tmp); // TypeContourModel
1304                         fscanf(pFile,"%s",tmp); // ##
1305                         typeContourModel = atoi(tmp);
1306
1307                         manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
1308                         manModelContour->Open(pFile);
1309                         if(pFileData != NULL)
1310                         {
1311                                 manModelContour->OpenData(pFileData);
1312                         }
1313
1314             if (_tmpReadFileTypeOfTransformation==-1){
1315                 //nothing to do..
1316             } else if (_tmpReadFileTypeOfTransformation==0){
1317                 double transX, transY;
1318                 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];                    // X
1319                 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];                    // Y
1320                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1321             } else if (_tmpReadFileTypeOfTransformation==1) {
1322                 double transX, transY;
1323                 transX = (double) _tmpReadFileImageSpac[0]/imageSpac[0];                  // X
1324                 transY = (double) _tmpReadFileImageSpac[1]/imageSpac[1];                  // Y
1325                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1326             } else if (_tmpReadFileTypeOfTransformation==2) {  // with Z include
1327                 double transX, transY;
1328                 transX = (double) _tmpReadFileImageSpac[0]/imageSpac[0];                   // X
1329                 transY = (double) _tmpReadFileImageSpac[1]/imageSpac[1];                   // Y
1330                 instantVector[1]=instantVector[1]*_tmpReadFileImageSpac[2]/imageSpac[2];   // Z
1331                 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1332             }else {
1333                     printf ("EED Warnning! wxContourMainFrame::openContours _tmpReadFileTypeOfTransformation not set. \n");
1334             }
1335
1336                         fscanf(pFile,"%s",tmp); // TypeView
1337                         fscanf(pFile,"%s",tmp); // ##
1338                         typeView = atoi(tmp);
1339
1340                         std::string theName;
1341                         theName = kernelManager->createOutline( manModelContour, instantVector );
1342                         bool addedModel = theName.compare("") != 0;
1343                         if( addedModel )
1344                         {
1345                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1346                                 _theViewPanel->getSpacing(spc);
1347                                 //Adding the manualContourControler to interface objects structure
1348                                 //Adding the manualViewContour to interface objects structure
1349                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1350                                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1351                         }
1352
1353                         if (staticContour) //StaticContours (will appear in all slices)
1354                         {
1355                                 Instant instant(&instantVector);
1356                                 kernelManager->changeContourOfManager( theName , &instant );
1357                         }
1358                 }// for  numberOfContours
1359
1360 /*      }    */
1361
1362 }
1363
1364 void wxContourMainFrame::RefreshInterface()
1365 {
1366         changeInstant();
1367         _theViewPanel->RefreshInterface();
1368         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1369         //wxvtk2dbaseview->Refresh();
1370 }
1371
1372 vtkImageData* wxContourMainFrame::getImageData()
1373 {
1374         return _theViewPanel->getImageData();
1375 }
1376
1377 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1378 {
1379         //JCP 20-10-08 Undo redo implementation
1380         saveState();
1381         //JCP 20-10-08 Undo redo implementation
1382
1383         wxBusyCursor wait;
1384         int                                     x                                       = _theViewPanel->GetX();
1385         int                                     y                                       = _theViewPanel->GetY();
1386         int                                     z                                       = _theViewPanel->GetZ();
1387         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1388         RefreshInterface();
1389 }
1390
1391 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1392 {
1393         int typeofcontour = 1;
1394         //Image Data
1395         vtkImageData    *imagedata      = getImageData();
1396         //Tipo de pixeles a utilizar internamente en ITK
1397         typedef   float  InternalPixelType;
1398         const     unsigned int    Dimension = 2;
1399         typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1400         //Tipo de pixeles de salida 1
1401         typedef unsigned char OutputPixelType;
1402         typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1403         //Tipo de pixeles de salida 2
1404         typedef unsigned short OutputPixelType2;
1405         typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1406         //DefiniciÛn del thresholder
1407         typedef itk::BinaryThresholdImageFilter<
1408                                                         InternalImageType,
1409                                                         OutputImageType    >    ThresholdingFilterType;
1410         //DefiniciÛn del primer filtro de conversiÛn de pixeles
1411         typedef itk::CastImageFilter<
1412                                 OutputImageType, OutputImageType2 >  CastFilterType;
1413         //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1414         typedef itk::CastImageFilter<
1415                                 OutputImageType2, InternalImageType >  CastFilterType2;
1416         //Tercer tipo de conversiÛn
1417         typedef itk::RescaleIntensityImageFilter<
1418                                                                 InternalImageType,
1419                                                                 OutputImageType >   CastFilterType3;
1420         //Cuarto tipo de conversiÛn
1421         typedef itk::RescaleIntensityImageFilter<
1422                                                                 OutputImageType,
1423                                                                 OutputImageType >   CastFilterType4;
1424         ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1425         thresholder->SetLowerThreshold( 0.0 );
1426         thresholder->SetUpperThreshold( 128 );
1427         thresholder->SetOutsideValue(  255  );
1428         thresholder->SetInsideValue(  0 );
1429         //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1430         typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1431         typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1432 //EED10JUIN2011 typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1433         ConnectorType::Pointer connector        = ConnectorType::New();
1434         ConnectorType2::Pointer connector2      = ConnectorType2::New();
1435         CastFilterType::Pointer filter   = CastFilterType::New();
1436         CastFilterType2::Pointer filter2 = CastFilterType2::New();
1437         connector->SetInput( imagedata );
1438         filter2->SetInput(connector->GetOutput());
1439         typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1440                                                                 InternalImageType,
1441                                                                 InternalImageType >  SmoothingFilterType;
1442         SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1443         typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1444                                                                 InternalImageType,
1445                                                                 InternalImageType >  GradientFilterType;
1446         typedef   itk::SigmoidImageFilter<
1447                                                                 InternalImageType,
1448                                                                 InternalImageType >  SigmoidFilterType;
1449         GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1450         SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1451         sigmoid->SetOutputMinimum(  0.0  );
1452         sigmoid->SetOutputMaximum(  255.0  );
1453         typedef  itk::FastMarchingImageFilter<
1454                                                                 InternalImageType,
1455                                                                 InternalImageType >    FastMarchingFilterType;
1456         FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1457         typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1458                                         InternalImageType >    GeodesicActiveContourFilterType;
1459         GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1460                                                                                 GeodesicActiveContourFilterType::New();
1461         typedef  itk::ZeroCrossingImageFilter<
1462                                                                 InternalImageType,
1463                                                                 InternalImageType >    ZeroCrossingFilterType;
1464         ZeroCrossingFilterType::Pointer zeroCrossing =
1465                                                         ZeroCrossingFilterType::New();
1466         const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1467         geodesicActiveContour->SetPropagationScaling( propagationScaling );
1468         geodesicActiveContour->SetCurvatureScaling( 1.0 );
1469         geodesicActiveContour->SetAdvectionScaling( 1.0 );
1470         geodesicActiveContour->SetMaximumRMSError( 0.02 );
1471         int it=atoi(  crea::wx2std(iter).c_str() );
1472         geodesicActiveContour->SetNumberOfIterations( it );
1473         smoothing->SetInput( filter2->GetOutput() );
1474         gradientMagnitude->SetInput( smoothing->GetOutput() );
1475         sigmoid->SetInput( gradientMagnitude->GetOutput() );
1476         fastMarching->SetInput( sigmoid->GetOutput() );
1477         geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1478         geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1479         zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1480         //thresholder->SetInput( zeroCrossing->GetOutput() );
1481         thresholder->SetInput( geodesicActiveContour->GetOutput() );
1482         connector2->SetInput( thresholder->GetOutput()  );
1483         smoothing->SetTimeStep( 0.125 );
1484         smoothing->SetNumberOfIterations(  5 );
1485         smoothing->SetConductanceParameter( 9.0 );
1486         const double sigma      = atof(  crea::wx2std(sigm).c_str() );
1487         gradientMagnitude->SetSigma(  sigma  );
1488         const double alpha      =  atof(  crea::wx2std(alf).c_str() );
1489         const double beta       =  atof(  crea::wx2std(bet).c_str() );
1490         sigmoid->SetAlpha( alpha );
1491         sigmoid->SetBeta(  beta  );
1492         typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1493         typedef FastMarchingFilterType::NodeType       NodeType;
1494         NodeContainer::Pointer seeds = NodeContainer::New();
1495         InternalImageType::IndexType  seedPosition;
1496         seedPosition[0]         = x;
1497         seedPosition[1]         = y;
1498         const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1499         NodeType node;
1500         const double seedValue = - initialDistance;
1501         node.SetValue( seedValue );
1502         node.SetIndex( seedPosition );
1503         seeds->Initialize();
1504         seeds->InsertElement( 0, node );
1505         fastMarching->SetTrialPoints( seeds );
1506         fastMarching->SetSpeedConstant( 1.0 );
1507         fastMarching->SetOutputSize( connector->GetOutput()->GetBufferedRegion().GetSize() );
1508         fastMarching->SetStoppingValue( 800 );
1509         try
1510     {
1511 //              connector2->Update();
1512                 vtkImageData *idata = NULL;
1513                 idata                           = connector2->GetOutput();
1514                 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1515                 cntVTK->SetNumberOfContours( 1 );
1516                 cntVTK->SetValue( 0, 255 );
1517 //EED 2017-01-01 Migration VTK7
1518 #if VTK_MAJOR_VERSION <= 5
1519                 cntVTK->SetInput( idata );
1520                 cntVTK->Update( );
1521                 cntVTK->UpdateInformation();
1522 #else
1523                 cntVTK->SetInputData( idata );
1524 #endif
1525                 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1526 //EED 2017-01-01 Migration VTK7
1527 #if VTK_MAJOR_VERSION <= 5
1528                 cpd->SetInput( cntVTK->GetOutput( ) );
1529                 cpd->Update( );
1530                 cpd->UpdateInformation();
1531 #else
1532                 cpd->SetInputData( cntVTK->GetOutput( ) );
1533 #endif
1534                 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1535                 conn->SetExtractionModeToLargestRegion( );
1536 //EED 2017-01-01 Migration VTK7
1537 #if VTK_MAJOR_VERSION <= 5
1538                 conn->SetInput( cpd->GetOutput( ) );
1539                 conn->Update( );
1540                 conn->UpdateInformation();
1541 #else
1542                 conn->SetInputData( cpd->GetOutput( ) );
1543 #endif
1544                 vtkStripper* vtkstripper = vtkStripper::New( );
1545 //EED 2017-01-01 Migration VTK7
1546 #if VTK_MAJOR_VERSION <= 5
1547                 vtkstripper->SetInput( conn->GetOutput() );
1548                 vtkstripper->Update();
1549                 vtkstripper->UpdateInformation();
1550 #else
1551                 vtkstripper->SetInputData( conn->GetOutput() );
1552                 cntVTK->Update();
1553 #endif
1554                 vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1555                 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1556
1557 //EED 2017-01-01 Migration VTK7
1558 #if VTK_MAJOR_VERSION <= 5
1559                 polyDataResult->Update( );
1560                 polyDataResult->UpdateInformation();
1561 #else
1562         // ..
1563 #endif
1564                 cntVTK          -> Delete();
1565                 cpd                     -> Delete();
1566                 conn            -> Delete();
1567                 //--Calculating control points
1568                 std::vector<double> vecX;
1569                 std::vector<double> vecY;
1570                 std::vector<double> vecXo;
1571                 std::vector<double> vecYo;
1572                 std::vector<double>::iterator vecXoi;
1573                 std::vector<double>::iterator vecYoi;
1574                 std::vector<double> vecZ;
1575                 std::vector<double> vecCtrlPointX;
1576                 std::vector<double> vecCtrlPointY;
1577                 std::vector<double> vecCtrlPointZ;
1578                 double *p;
1579                 double xAct=0;
1580                 double yAct=0;
1581                 int ii,size=polyDataResult->GetNumberOfPoints();
1582                 ofstream myfile;
1583                 myfile.open ("C:/Creatis/example2.txt");
1584                 size=polyDataResult->GetNumberOfPoints();
1585                 for (ii=0;ii<size;ii++)
1586                 {
1587                         if(ii==0)
1588                         {
1589                                 xAct=x;
1590                                 yAct=y;
1591                         }
1592                         p       = polyDataResult->GetPoint(ii);
1593                         double x=p[0];
1594                         double y=p[1];
1595 //                      if(fabs(yAct-y)>20)
1596 //                      {
1597 //                              if((xAct-x)>1 || (xAct-x)<-1)
1598 //                              {
1599 //                                      vecX.push_back( p[0] );
1600 //                                      vecY.push_back( p[1] );
1601 //                                      myfile <<p[0]<<","<<p[1]<<"\n";
1602 //                                      std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1603 //                                      std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1604 //                                      std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1605 //                                      vecZ.push_back( 900 );
1606 //                                      xAct=x;
1607 //                                      yAct=y;
1608 //                              } else {
1609 //                                      vecXo.push_back(p[0]);
1610 //                                      vecYo.push_back(p[1]);
1611 //                              }
1612 //                      } else
1613
1614                         if(fabs(xAct-x)>11)
1615                         {
1616                                 vecXo.push_back(p[0]);
1617                                 vecYo.push_back(p[1]);
1618                         } else {
1619                                 vecX.push_back( p[0] );
1620                                 myfile <<p[0]<<","<<p[1]<<"\n";
1621                                 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1622                                 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1623                                 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1624                                 vecY.push_back( p[1] );
1625 //EED 2017-12-16
1626                                 vecZ.push_back( -900 );
1627                                 xAct = x;
1628                                 yAct = y;
1629                         } // if xAct
1630
1631
1632                 } // for
1633
1634                 while(!vecXo.empty())
1635                 {
1636                         vecX.push_back(vecXo.back());
1637                         //std::cout<<" x Siguiente "<<vecXo.back();
1638                         vecXo.pop_back();
1639         //EED 2017-12-16
1640                         vecZ.push_back( -900 );
1641                 }
1642                 while(!vecYo.empty())
1643                 {
1644                         vecY.push_back(vecYo.back());
1645                                 vecYo.pop_back();
1646                 }
1647                 myfile.close();
1648
1649 //              for(int l=0;l<vecX.size();l++)
1650 //              {
1651 //                      if(l==0)
1652 //                      {
1653 //                vecXo.push_back(p[0]);
1654 //                              vecYo.push_back(p[1]);
1655 //                      } else {
1656 //                              if(vecXoi[l-1]==)
1657 //                              {
1658 //                              }
1659 //                      } // if
1660 //              } // for
1661
1662                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1663                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1664
1665                 int method=2;
1666                 if (method==0)
1667                 {
1668                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1669                 } else if (method==1){
1670                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1671                 } else if (method==2){
1672                         extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1673                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1674                 }
1675                 //--Adding contour to the system
1676
1677                 std::vector<int> actualInstantVector;
1678                 _instantPanel->getInstant( actualInstantVector );
1679                 actualInstantVector[1]=z;
1680
1681                 int j,sizeCtrPt = vecCtrlPointX.size();
1682
1683                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1684                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1685                 if (sizeCtrPt>=3){
1686                         for (j=0 ; j<sizeCtrPt ; j++)
1687                         {
1688                                 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1689                         } // for
1690                         std::string theName;
1691                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1692                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1693                         bool addedModel = theName.compare("") != 0;
1694                         if( addedModel )
1695                         {
1696                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1697                                 _theViewPanel->getSpacing(spc);
1698                                 //Adding the manualContourControler to interface objects structure
1699                                 //Adding the manualViewContour to interface objects structure
1700                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1701                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1702                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1703                         }       // if addedModel
1704                 } // if sizeCtrPt
1705
1706     }   catch( itk::ExceptionObject & excep ) {
1707                 std::cerr << "Exception caught !" << std::endl;
1708                 std::cerr << excep << std::endl;
1709     } // try
1710
1711 }
1712
1713 void wxContourMainFrame::onSegmentationOneSlice(double isovalue,int sampling,int method){
1714
1715         //JCP 20-10-08 Undo redo implementation
1716         saveState();
1717         //JCP 20-10-08 Undo redo implementation
1718
1719         wxBusyCursor wait;
1720         int                                     x                                       = _theViewPanel->GetX();
1721         int                                     y                                       = _theViewPanel->GetY();
1722         int                                     z                                       = _theViewPanel->GetZ();
1723         SegmentationOneSlice( x,y,z,isovalue, sampling, method , getImageData() );
1724         RefreshInterface();
1725 }
1726
1727
1728 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, double isovalue, int sampling, int method , vtkImageData *imagedata)
1729 {
1730         int typeofcontour = 1;
1731         //--Extracting Contour
1732 // 2024-01-09
1733 //      vtkImageData    *imagedata      = getImageData();
1734
1735         vtkImageReslice *imageReslice = vtkImageReslice::New();
1736 //EED
1737                 double spc[3];
1738                 imagedata->GetSpacing(spc);
1739                 x = x*spc[0];
1740                 y = y*spc[1];
1741                 z = z;
1742
1743 //EED 2017-01-01 Migration VTK7
1744 #if VTK_MAJOR_VERSION <= 5
1745         imageReslice->SetInput( imagedata );
1746 #else
1747         imageReslice->SetInputData( imagedata );
1748 #endif
1749         imageReslice->SetInformationInput(imagedata);
1750         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1751         imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
1752         imageReslice->SetOutputDimensionality(2);
1753         imageReslice->SetInterpolationModeToLinear();
1754
1755 //EED 2017-01-01 Migration VTK7
1756 #if VTK_MAJOR_VERSION <= 5
1757         // ..
1758 #else
1759         imageReslice->Update();
1760 #endif
1761
1762         imagedata = imageReslice->GetOutput();
1763 //EED 2017-01-01 Migration VTK7
1764 #if VTK_MAJOR_VERSION <= 5
1765         imagedata->Update();
1766         imagedata->UpdateInformation();
1767 #else
1768         // ..
1769 #endif
1770
1771         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1772 //EED 2017-01-01 Migration VTK7
1773 #if VTK_MAJOR_VERSION <= 5
1774         cntVTK->SetInput( imagedata );
1775 #else
1776         cntVTK->SetInputData( imagedata );
1777 #endif
1778
1779         cntVTK->SetNumberOfContours( 1 );
1780         //cntVTK->SetValue( 0, vmin );
1781 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1782         cntVTK->SetValue( 1, isovalue );
1783 //      cntVTK->SetValue( 1, vmax );
1784         cntVTK->Update( );
1785         cntVTK->UpdateInformation();
1786
1787         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1788 //EED 2017-01-01 Migration VTK7
1789 #if VTK_MAJOR_VERSION <= 5
1790         cpd->SetInput( cntVTK->GetOutput( ) );
1791 #else
1792         cpd->SetInputData( cntVTK->GetOutput( ) );
1793 #endif
1794         cpd->ConvertLinesToPointsOff( );
1795         cpd->Update( );
1796         cpd->UpdateInformation();
1797
1798         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1799
1800 //      conn->SetExtractionModeToPointSeededRegions();
1801 //      conn->SetExtractionModeToCellSeededRegions();
1802 //      conn->SetExtractionModeToSpecifiedRegions();
1803 //      conn->SetExtractionModeToLargestRegion();
1804 //      conn->SetExtractionModeToAllRegions();
1805
1806         conn->SetExtractionModeToClosestPointRegion();
1807
1808         //conn->SetMaxRecursionDepth( 3000 );
1809
1810 //EED 2017-01-01 Migration VTK7
1811 #if VTK_MAJOR_VERSION <= 5
1812         conn->SetInput( cpd->GetOutput( ) );
1813 #else
1814         conn->SetInputData( cpd->GetOutput( ) );
1815 #endif
1816
1817         conn->SetClosestPoint( x, y, 0 );
1818         conn->Update( );
1819         conn->UpdateInformation();
1820
1821         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1822 //EED 2017-01-01 Migration VTK7
1823 #if VTK_MAJOR_VERSION <= 5
1824         cpd2->SetInput( conn->GetOutput( ) );
1825 #else
1826         cpd2->SetInputData( conn->GetOutput( ) );
1827 #endif
1828         cpd2->Update();
1829         cpd2->UpdateInformation();
1830
1831         vtkStripper* vtkstripper = vtkStripper::New( );
1832 vtkstripper->SetJoinContiguousSegments(true);
1833         vtkstripper->SetMaximumLength(20000);
1834 //EED 2017-01-01 Migration VTK7
1835 #if VTK_MAJOR_VERSION <= 5
1836         vtkstripper->SetInput( cpd2->GetOutput() );
1837 #else
1838         vtkstripper->SetInputData( cpd2->GetOutput() );
1839 //      vtkstripper->SetInputData( cntVTK->GetOutput() );
1840
1841 #endif
1842         vtkstripper->Update();
1843         vtkstripper->UpdateInformation();
1844
1845
1846         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1847
1848 //EED 2017-01-01 Migration VTK7
1849 #if VTK_MAJOR_VERSION <= 5
1850         polyDataResult->Update( );
1851         polyDataResult->UpdateInformation();
1852 #else
1853         //...
1854 #endif
1855
1856 /* EED
1857 ofstream myfile;
1858 myfile.open ("c:/temp/example.txt");
1859 myfile << "\n";
1860 polyDataResult->Print(myfile);
1861 myfile << "-------------------------------------\n";
1862 polyDataResult->GetLines()->Print(myfile);
1863 myfile.close();
1864 */
1865         cntVTK  -> Delete();
1866         cpd2    -> Delete();
1867         cpd             -> Delete();
1868         conn    -> Delete();
1869
1870 //--Calculating control points
1871         std::vector<double> vecX;
1872         std::vector<double> vecY;
1873         std::vector<double> vecZ;
1874         std::vector<double> vecCtrlPointX;
1875         std::vector<double> vecCtrlPointY;
1876         std::vector<double> vecCtrlPointZ;
1877
1878 //printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
1879 //int numberOfPointsInCell;
1880 //int numberOfcells=polyDataResult->GetNumberOfCells();
1881 //for (int jj=0; jj<numberOfcells ; jj++)
1882 //{
1883 //      vtkCell* vtkcell = polyDataResult->GetCell( jj );
1884 //      numberOfPointsInCell=vtkcell->GetNumberOfPoints();
1885 //      printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d  points=%d \n",jj,numberOfPointsInCell );
1886 //}// for jj
1887 // printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
1888 // polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
1889
1890
1891         if (polyDataResult->GetNumberOfCells()>0)
1892         {
1893                 double *p;
1894                 vtkCell* vtkcell = polyDataResult->GetCell( 0 );
1895         //      int ii,size=polyDataResult->GetNumberOfPoints();
1896                 int ii,size=vtkcell->GetNumberOfPoints();
1897                 int id;
1898                 for (ii=0;ii<size;ii++)
1899                 {
1900         //              id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1901         //              p       = polyDataResult->GetPoint(id);
1902                         p       = vtkcell->GetPoints()->GetPoint(ii);
1903 //      printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d  px=%f py=%f\n",ii,id, p[0],p[1]);
1904         //              double x=p[0];
1905         //              double y=p[1];
1906                         vecX.push_back( p[0] );
1907                         vecY.push_back( p[1] );
1908         //EED 2017-12-16
1909                         vecZ.push_back( -900 );
1910         //                      vecZ.push_back( p[2] );
1911                 }
1912                 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1913                 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1914         //PROOFS
1915                 /*if (methodRadiobox->GetSelection()==0){
1916                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1917                 }
1918                 if (methodRadiobox->GetSelection()==1){
1919                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1920                 }
1921                 if (methodRadiobox->GetSelection()==2){
1922                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1923                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1924                 }*/
1925
1926                 if (method==0)
1927                 {
1928                         extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1929                 } else if (method==1){
1930                         extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1931                 } else if (method==2){
1932                         extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1933                         extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1934                 }
1935
1936                 //--Adding contour to the system
1937                 std::vector<int> actualInstantVector;
1938                 _instantPanel->getInstant( actualInstantVector );
1939                 actualInstantVector[1]=z;
1940
1941                 int j,sizeCtrPt = vecCtrlPointX.size();
1942                 manualBaseModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1943                 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
1944                 manModelContour->SetLabel2( std::to_string(z) );
1945                 if (sizeCtrPt>=3)
1946                 {
1947                         for (j=0 ; j<sizeCtrPt ; j++)
1948                         {
1949                                 manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
1950                         } // for
1951                         std::string theName;
1952                         //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1953                         theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1954                         bool addedModel = theName.compare("") != 0;
1955                         if( addedModel )
1956                         {
1957                                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1958                                 _theViewPanel->getSpacing(spc);
1959                                 //Adding the manualContourControler to interface objects structure
1960                                 //Adding the manualViewContour to interface objects structure
1961                                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1962                                 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1963                                 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1964                         }       // if addedModel
1965                 } // if sizeCtrPt
1966         } // if NumberOfCells > 0
1967 //printf("EED wxContourMainFrame::SegmentationOneSlice  End\n");
1968 }
1969
1970 int wxContourMainFrame::GetImageDataSizeZ()
1971 {
1972         return _theViewPanel->GetImageDataSizeZ();
1973 }
1974
1975 void wxContourMainFrame::GetImageDataRange(double *range)
1976 {
1977         _theViewPanel->GetImageDataRange(range);
1978 }
1979
1980 // Used from wxContourMainFrame_tool  bbtk box
1981 void wxContourMainFrame::onSegmentationAllSlices2(int step ,double isovalue,int sampling,int method,int minZ, int maxZ,vtkImageData* imagedata)
1982 {
1983     //JCP 20-10-08 Undo redo implementation
1984     saveState();
1985     //JCP 20-10-08 Undo redo implementation
1986     wxBusyCursor wait;
1987 //    int                 x = _theViewPanel->GetX();
1988 //    int                 y = _theViewPanel->GetY();
1989     int                 z;
1990 //    double              porcent;
1991 //    wxString            tmpString;
1992 //    double              totalZ = maxZ-minZ+1;
1993     int ext[6];
1994     imagedata->GetExtent(ext);
1995     int sizeZ = ext[5]-ext[4]+1;
1996     if (minZ<0) { minZ=0; }
1997     if (maxZ>=sizeZ) { maxZ=sizeZ-1; }
1998     if (step>=1) {
1999         int _minZ = minZ/step;
2000         _minZ=_minZ*step;
2001         for( z=_minZ ; z<=maxZ ; z=z+step )
2002         {
2003             //        porcent = 100.0* (z-minZ)/totalZ;
2004             //       tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2005             //        interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2006             //_staticTextSegmentation->SetLabel(tmpString);
2007             SegmentationOneSlice( 100,100,z,isovalue, sampling,method , imagedata );
2008         }
2009         //    interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2010         RefreshInterface();
2011     } // if step
2012 }
2013
2014 void wxContourMainFrame::onSegmentationAllSlices(int minZ,int maxZ,double isovalue,int sampling,int method)
2015 {
2016         //JCP 20-10-08 Undo redo implementation
2017         saveState();
2018         //JCP 20-10-08 Undo redo implementation
2019
2020         wxBusyCursor wait;
2021         int                                     x = _theViewPanel->GetX();
2022         int                                     y = _theViewPanel->GetY();
2023         int                             z;
2024         double                          porcent;
2025         wxString                        tmpString;
2026         double                          totalZ = maxZ-minZ+1;
2027         for( z=minZ ; z<=maxZ ; z++ )
2028         {
2029                 porcent = 100.0* (z-minZ)/totalZ;
2030                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2031                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2032                 //_staticTextSegmentation->SetLabel(tmpString);
2033                 SegmentationOneSlice( x,y,z,isovalue, sampling,method , getImageData() );
2034         }
2035         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
2036         RefreshInterface();
2037 }
2038
2039
2040 //Creates a reference line to be used as the axis of the mirroring
2041 void wxContourMainFrame::referenceLine()
2042 {
2043         if (_refLineControl==NULL)
2044         {
2045                 wxBusyCursor wait;
2046                 double spc[3];
2047
2048                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2049                 vtkimagedata->GetSpacing(spc);
2050
2051                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2052
2053                 _refLineControl = new manualLineControler();
2054                 _refLineModel   = new manualContourModelLine();
2055                 _refLineView = new manualViewLine();
2056                 _refLineView->SetModel( _refLineModel );
2057                 _refLineView->SetWxVtkBaseView( viewer2D );
2058                 _refLineView->SetRange( 2 );
2059                 _refLineView->SetZ( 1200 );
2060
2061                 _refLineView->SetSpacing(spc);
2062
2063                 _refLineView->SetColorNormalContour(0, 0, 1);
2064                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2065                 _refLineView->SetWidthLine(4);
2066
2067                 _refLineControl->SetModelView( _refLineModel , _refLineView );
2068                 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2069                 style->AddInteractorStyleMaracas( _refLineControl );
2070                 _refLineModel->SetCloseContour(false);
2071                 _refLineControl->CreateNewManualContour();
2072
2073 //AD: Inicializar el mirroring con una linea ya pintada
2074         /*
2075                 double z = _refLineControl->GetZ();
2076
2077                 int imageDim[3];
2078                 image->GetDimensions(imageDim);
2079                 double x = (double) imageDim[0]/2;
2080                 double y1 = (double) (imageDim[1]/2)+15;
2081                 double y2 = (double) (imageDim[1]/2)-15;
2082
2083                 _refLineControl->AddPoint(x,y1,z);
2084                 _refLineControl->AddPoint(x,y2,z);
2085                 _refLineControl->SetCompleteCreation(true);
2086
2087                 _refLineModel->AddPoint(x,y1,z);
2088                 _refLineModel->AddPoint(x,y2,z);
2089                 _refLineModel->UpdateSpline();
2090
2091                 _refLineView->UpdateViewPoint(0);
2092                 _refLineView->UpdateViewPoint(1);
2093         */
2094
2095                 _refLineControl->SetActive(true);
2096                 _refLineView->RefreshContour();
2097         }
2098 }
2099
2100 //Hides the referenceLine
2101 void wxContourMainFrame::refLineHide()
2102 {
2103         if (_refLineControl!=NULL)
2104         {
2105                 if (_refLineControl->GetActive())
2106                 {
2107                         _refLineView->RemoveCompleteContourActor();
2108                         _refLineControl->SetEditable(false);
2109                         _refLineControl->SetActive(false);
2110
2111                         RefreshInterface();
2112                 }
2113         }
2114 }
2115
2116 //Shows the referenceLine
2117 void wxContourMainFrame::refLineShow()
2118 {
2119         if (_refLineControl!=NULL)
2120         {
2121                 if (_refLineControl->GetActive()==false)
2122                 {
2123                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2124
2125                         _refLineView->SetModel( _refLineModel );
2126                         _refLineView->SetWxVtkBaseView( viewer2D );
2127                         _refLineView->SetRange( 2 );
2128                         _refLineView->SetZ( 1200 );
2129
2130                         _refLineControl->SetModelView( _refLineModel , _refLineView );
2131                         vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2132                         style->AddInteractorStyleMaracas( _refLineControl );
2133                         _refLineControl->CreateNewManualContour();
2134                         _refLineControl->SetActive(true);
2135                         _refLineView->RefreshContour();
2136
2137                         RefreshInterface();
2138                 }
2139         }
2140 }
2141
2142 void wxContourMainFrame::refLineChangeWidth(int width)
2143 {
2144         _refLineView->SetWidthLine(width);
2145         _refLineView->RefreshContour();
2146
2147         RefreshInterface();
2148 }
2149
2150
2151 void wxContourMainFrame::onMirror()
2152 {
2153         //AD:02-09
2154         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2155         std::vector<std::string> filterCurrentSelection;
2156
2157         std::vector<int> tempVector;
2158         _instantPanel->getInstant( tempVector );
2159     _performingOperation->reset();
2160         _performingOperation->setStartCommand( COPY );
2161         _performingOperation->setStartOperationInstantVector( tempVector );
2162         _performingOperation->setKeyNamesOperationElems( currentSelection );
2163
2164         char theStartCommand = _performingOperation->getStartCommand();
2165         if (  theStartCommand == COPY )
2166         {
2167                 //JCP 20-10-08 Undo redo implementation
2168                 saveState();
2169                 //JCP 20-10-08 Undo redo implementation
2170                 std::vector<int> tempVector;
2171                 _instantPanel->getInstant( tempVector );
2172                 _performingOperation->setEndOperationInstantVector ( tempVector );
2173                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2174                 int i,size = elems.size();
2175                 for( i=0; i<size; i++ )
2176                 {
2177                         createMirrorContourOf( elems[i], tempVector, i>0 );
2178                 }
2179         }
2180
2181         //deleteContour( _refName );
2182         //_refName = "";
2183 }
2184
2185
2186 void wxContourMainFrame::showAxis(bool show)
2187 {
2188         _theViewPanel->SetVisibleAxis(show);
2189         _theViewPanel->Refresh();
2190 }
2191
2192
2193 void wxContourMainFrame::onRigidPressed(){
2194         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2195         int elementsSelected = currentSelection.size();
2196
2197         if ( elementsSelected >= 1 ){
2198                 //JCP 20-10-08 Undo redo implementation
2199                 saveState();
2200                 //JCP 20-10-08 Undo redo implementation
2201
2202                 std::vector<int> tempVector;
2203                 _instantPanel->getInstant( tempVector );
2204                 Instant instant(&tempVector);
2205
2206                 int i , size=currentSelection.size();
2207                 for ( i=0 ; i<size ; i++ )
2208                 {
2209                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2210                 } // i
2211         }
2212 }
2213
2214 void wxContourMainFrame::onWidthOfContour(double width){
2215
2216         _theViewPanel->removeSceneContours();
2217         _theViewPanel->SetWidthContour(width);
2218
2219         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2220
2221         RefreshInterface();
2222 }
2223
2224 int wxContourMainFrame::getColorWindow()
2225 {
2226         /*
2227         double range[2];
2228         vtkImageData * img = getImageData();
2229         img->GetScalarRange(range);
2230
2231         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2232
2233         return (int)range[1];
2234         */
2235         return _theViewPanel->getColorWindow();
2236 }
2237
2238 int wxContourMainFrame::getWindowLevel()
2239 {
2240         /*
2241         double range[2];
2242         vtkImageData * img = getImageData();
2243         img->GetScalarRange(range);
2244
2245         std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2246
2247         return (int)range[1];
2248         */
2249         return _theViewPanel->getWindowLevel();
2250 }
2251
2252 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
2253 {
2254         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2255         RefreshInterface();
2256 }
2257
2258 void wxContourMainFrame::onInterpolation(bool interpolate)
2259 {
2260         _theViewPanel->onInterpolation(interpolate);
2261         RefreshInterface();
2262 }
2263
2264 void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
2265 {
2266         _theViewPanel->onBeforeAfterContour(before,after);
2267         RefreshInterface();
2268 }
2269
2270 void wxContourMainFrame::onJumpSlice(int step, int shift)
2271 {
2272         std::vector<int> tempVector;
2273         _instantPanel->getInstant( tempVector );
2274         int ss  = abs(step);
2275         int pos         = tempVector[1];
2276         int maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2277         pos=(pos/ss)*ss+step+shift;
2278         if ((pos>=0) && (pos<maxZ))
2279         {
2280                 tempVector[1]=pos;
2281                 _instantPanel->setInstant( tempVector );
2282                 RefreshInterface();
2283         } // if pos
2284 }
2285
2286 void wxContourMainFrame::onShowTextContour(bool show)
2287 {
2288         _theViewPanel->onShowTextContour(show);
2289         RefreshInterface();
2290 }
2291
2292 void wxContourMainFrame::onChangeInstant(std::string name,int actual)
2293 {
2294         _instantPanel->setConceptValue( name, actual );
2295 }
2296
2297 void wxContourMainFrame::resetAppend()
2298 {
2299         kernelManager->resetAppend();
2300 }
2301
2302 void wxContourMainFrame::onSpreadAdd()
2303 {
2304         std::vector<double> vecX;
2305         std::vector<double> vecY;
2306         std::vector<double> vecZ;
2307         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2308         std::vector<int> tempVector;
2309         _instantPanel->getInstant( tempVector );
2310         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2311         interfMainPanel::getInstance()->appendStringSpread(val);
2312 }
2313
2314
2315 void wxContourMainFrame::onSpreadAddAll()
2316 {
2317 //EED02
2318         std::vector<int> tempVector;
2319         _instantPanel->getInstant( tempVector );
2320         int minZ,maxZ;
2321     minZ        = 0;
2322     maxZ        = interfMainPanel::getInstance()->GetImageDataSizeZ();
2323         int z;
2324         int sizeLstContourThings;
2325         for ( z=minZ ; z<=maxZ ; z++ )
2326         {
2327                 tempVector[1]=z;
2328                 Instant instant(&tempVector);
2329                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2330                 sizeLstContourThings = lstContourThings.size();
2331                 if (sizeLstContourThings>=1)
2332         {
2333             std::vector<double> vecX;
2334             std::vector<double> vecY;
2335             std::vector<double> vecZ;
2336             ContourThing **contourthing = lstContourThings[0];
2337                         manualBaseModel *cModel                         =  (*contourthing)->getModel();
2338                         int i,size = cModel->GetNumberOfPointsSpline();
2339                         double x,y,z;
2340                         for (i=0; i<size; i++)
2341                         {
2342                                 cModel->GetSpline_i_Point(i, &x, &y, &z);
2343                                 vecX.push_back(x);
2344                                 vecY.push_back(y);
2345                                 vecZ.push_back(z);
2346                         } // for i
2347             std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2348             interfMainPanel::getInstance()->appendStringSpread(val);
2349         }// if sizeLstContourThings
2350     } // for z
2351 }
2352
2353
2354 void wxContourMainFrame::onSpreadGo(int type)
2355 {
2356         //JCP 20-10-08 Undo redo implementation
2357         saveState();
2358         //JCP 20-10-08 Undo redo implementation
2359         wxBusyCursor wait;
2360         std::vector<double> vecCtrlPointX;
2361         std::vector<double> vecCtrlPointY;
2362         std::vector<double> vecCtrlPointZ;
2363         double  minZ,maxZ;
2364         int z;
2365
2366         std::vector<int> tempVector;
2367         _instantPanel->getInstant( tempVector );
2368 //              tempVector[1];
2369
2370         kernelManager->getMaxMinZ(&minZ,&maxZ);
2371 //JSTG_16-07-08_----------------------------------------------------------------
2372         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2373         kernelManager->CalculeSplinePropagation();
2374
2375         double          totalZ = maxZ-minZ+1;
2376         double          porcent;
2377         wxString        tmpString;
2378 //--------------------------------------------------------------------
2379         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2380         {
2381                 porcent = 100.0* (z-minZ)/totalZ;
2382                 int numero = (int)(z-minZ+1)/(int)totalZ;
2383                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2384
2385                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2386
2387                 int typeofcontour = 1;
2388                 std::string theName;
2389                 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2390
2391                 if( manModelContour!=NULL ){
2392                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2393                         this->_theViewPanel->getSpacing(spc);
2394                         //Adding the manualContourControler to interface objects structure
2395                         //Adding the manualViewContour to interface objects structure
2396                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2397                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2398                 } // if addedModel
2399         }
2400         if(z > maxZ){
2401                 porcent = 100.0;
2402                 int numero = (int)(z-minZ+1)/(int)totalZ;
2403                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2404
2405                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2406         }// for z
2407         //RefreshInterface();
2408 }
2409
2410 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
2411 {
2412         _instantPanel->getInstant( tempVector );
2413 }
2414
2415 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
2416 {
2417         std::vector<int> tempVector;
2418         _instantPanel->getInstant(tempVector);
2419         //Asignation of slide number should be different ex by name
2420         tempVector[1]=slide;
2421         return kernelManager->getOutlinesNameAtInstant(tempVector);
2422 }
2423
2424
2425 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2426 {
2427         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2428 }
2429
2430
2431 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2432 {
2433
2434         wxString tempString;
2435         int maxContourGroup     =       0;
2436
2437         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2438
2439         std::vector<manualBaseModel*> lstManConMod;
2440         std::vector<manualBaseModel*> lstManConModTmp;
2441         std::vector<manualBaseModel*> lstManConModExp;
2442         std::vector<double> pLstValue;
2443         std::vector<double> pLstValuePosX;
2444         std::vector<double> pLstValuePosY;
2445         std::vector<double> pLstValuePosZ;
2446
2447         int             resultSize;
2448         int             resultGrayRangeCount;
2449         double  resultMin;
2450         double  resultMax;
2451         double  resultAverage;
2452         double  resultStandardeviation;
2453
2454         std::vector<int> tempVector;
2455         _instantPanel->getInstant( tempVector );
2456
2457         int z;
2458         int ii,sizeLstContourThings;
2459
2460
2461         int minZ,maxZ;
2462         double totalZ;
2463         double porcent;
2464         wxString tmpString;
2465
2466
2467         if (selection==0 ) // actual slice
2468         {
2469                 int actualSlice = tempVector[1];
2470                 minZ    = actualSlice;
2471                 maxZ    = actualSlice;
2472         }       else  {  // slice range
2473                 minZ    = minimumZ;
2474                 maxZ    = maximumZ;
2475         }
2476
2477
2478         totalZ  = maxZ-minZ+1;
2479
2480         _contourextractdata->InitVolumeStatistics();
2481
2482 // For each slice..
2483         for ( z=minZ ; z<=maxZ ; z++ )
2484         {
2485
2486                 porcent = 100.0* (z-minZ)/totalZ;
2487                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2488
2489                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2490                 //_staticTextInformation->SetLabel(tmpString);
2491
2492                 //Extraction data from contours of each slice
2493                 _contourextractdata->SetZtoBeAnalys(z);
2494
2495                 tempVector[1]=z;
2496                 Instant instant(&tempVector);
2497                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2498                 sizeLstContourThings = lstContourThings.size();
2499
2500                 lstManConMod.clear();
2501                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2502                 {
2503                         ContourThing **contourthing = lstContourThings[ii];
2504                         lstManConMod.push_back( (*contourthing)->getModel() );
2505                 }
2506
2507                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2508
2509                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2510                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2511                 //_grid->SetRowLabelValue(z, tempString );
2512 //EED004
2513                 int iContourGroup,sizeContourGroup;
2514                 if (typeContourGroup==3) // contour separete
2515                 {
2516                         sizeContourGroup=lstManConModExp.size();
2517                         if ( maxContourGroup<sizeContourGroup )
2518                         {
2519                                 maxContourGroup=sizeContourGroup;
2520                         }
2521                 } else {  // contour AND OR XOR
2522                         sizeContourGroup=1;
2523                         maxContourGroup=1;
2524                 }
2525
2526                 int tmpIntA;
2527
2528                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2529                         lstManConModTmp.clear();
2530
2531
2532
2533                         if (typeContourGroup==3) // contour separete
2534                         {
2535                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2536                         } else {  // contour AND OR XOR
2537                                 lstManConModTmp = lstManConModExp;
2538                         }
2539
2540                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2541                         _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2542
2543                         pLstValue.clear();
2544                         pLstValuePosX.clear();
2545                         pLstValuePosY.clear();
2546                         pLstValuePosZ.clear();
2547
2548
2549                         int numberOfPixels;
2550                         _contourextractdata->GetValuesInsideCrown(  &numberOfPixels,
2551                                                                                                                 &pLstValue,
2552                                                                                                                 &pLstValuePosX,
2553                                                                                                                 &pLstValuePosY,
2554                                                                                                                 &pLstValuePosZ);
2555
2556                         resultSize=numberOfPixels;
2557                         // Statistics of each slice.
2558                         _contourextractdata->Statistics( &pLstValue,
2559                                                                                         grayRangeMin,
2560                                                                                         grayRangeMax,
2561                                                                                         &resultGrayRangeCount,
2562                                                                                         &resultSize,
2563                                                                                         &resultMin,
2564                                                                                         &resultMax,
2565                                                                                         &resultAverage,
2566                                                                                         &resultStandardeviation);
2567
2568                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2569                         {
2570                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2571                         }
2572
2573                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2574
2575                         tempString.Printf(_T("%d"),numberOfPixels);
2576
2577                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2578
2579                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2580                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2581
2582                         tempString.Printf(_T("%f"),resultMin);
2583                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2584
2585                         tempString.Printf(_T("%f"),resultMax);
2586                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2587
2588                         tempString.Printf(_T("%f"),resultAverage);
2589                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2590
2591                         tempString.Printf(_T("%f"),resultStandardeviation);
2592                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2593
2594
2595                 } // for iContourGroup
2596         } // for z
2597
2598         // Print Volume Statistics
2599
2600
2601         int             vol_rCountRange;
2602         int             vol_rsize;
2603         double  vol_minValue;
2604         double  vol_maxValue;
2605         double  vol_average;
2606         double  vol_standardeviation;
2607
2608         if (selection!=0 ) // actual slice
2609         {
2610
2611                 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2612                                                                                                  &vol_minValue, &vol_maxValue,
2613                                                                                                  &vol_average, &vol_standardeviation);
2614
2615                 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2616
2617                 tempString.Printf(_T("%d"),vol_rsize);
2618                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2619
2620                 tempString.Printf(_T("%d"),vol_rCountRange);
2621                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2622
2623                 tempString.Printf(_T("%f"),vol_minValue);
2624                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2625
2626                 tempString.Printf(_T("%f"),vol_maxValue);
2627                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2628
2629                 tempString.Printf(_T("%f"),vol_average);
2630                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2631
2632                 tempString.Printf(_T("%f"),vol_standardeviation);
2633                 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2634         }
2635         //-----------------------------------------
2636
2637         int iTitleGroup;
2638         wxString tmpTitleString;
2639         int tmpIntB;
2640         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2641         {
2642                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2643                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2644                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2645
2646                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2647                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2648                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2649                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2650                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2651                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2652                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2653         }// for title
2654         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2655 }
2656
2657 //AD: 29-05-09
2658 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2659         int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2660 {
2661         if (XYZValues)
2662         {
2663                 SaveValuesXYZ( directory , namefile, typeContourGroup );
2664         }
2665
2666         if (contourImage)
2667         {
2668                 vtkImageData * mask;
2669                 vtkImageData * value;
2670                 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2671                 this->SaveImageResult( directory , namefile, mask, value);
2672         }
2673
2674         if (statistics)
2675         {
2676                 std::ostringstream name;
2677                 name << filename << ".xls";
2678
2679
2680                 FILE *pFile=fopen(name.str().c_str(),"w+");
2681
2682
2683                 wxString tmpString;
2684                 int i,j,maxX;
2685
2686 //              int sizeZ = _theViewPanel->GetImageDataSizeZ();
2687 //              int maxY=sizeZ+2;
2688
2689                 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2690
2691                 // -- Title --
2692                 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2693                 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2694                 {
2695                                 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2696                                 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2697                 }
2698                 fprintf(pFile,"\n\n" );
2699
2700
2701
2702                 if (selection==0 ) // actual slice
2703                 {
2704                         std::vector<int> tempVector;
2705                         _instantPanel->getInstant( tempVector );
2706                         int actualSlice = tempVector[1];
2707                         minZ    = actualSlice;
2708                         maxZ    = actualSlice;
2709                 }
2710
2711                 // Stadistics...
2712                 for ( j=minZ; j<=maxZ ; j++)
2713                 {
2714                         fprintf(pFile,"%d\t" , j );
2715                         for (i=0 ; i<maxX ; i++){
2716                                 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2717                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2718                         } // for i
2719                         fprintf(pFile,"\n"  );
2720                 } // for j
2721
2722
2723                 // Total of stadistics.....
2724                 if (selection!=0)
2725                 {
2726                         fprintf(pFile,"\n Total:\t"  );
2727                         for (i=0 ; i<maxX ; i++){
2728                                 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2729                                 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2730                         } // for i
2731                         fprintf(pFile,"\n"  );
2732                 }
2733
2734                 fclose(pFile);
2735         }
2736 }
2737
2738 //AD: 29-05-09
2739 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2740 {
2741         wxBusyCursor wait;
2742
2743         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2744         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2745
2746         std::vector<manualBaseModel*> lstManConMod;
2747         std::vector<manualBaseModel*> lstManConModTmp;
2748         std::vector<manualBaseModel*> lstManConModExp;
2749         std::vector<double> pLstValue;
2750         std::vector<double> pLstValuePosX;
2751         std::vector<double> pLstValuePosY;
2752         std::vector<double> pLstValuePosZ;
2753
2754         std::vector<int> tempVector;
2755         _instantPanel->getInstant( tempVector );
2756
2757         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2758         int z;
2759         int ii,sizeLstContourThings;
2760
2761
2762         int minZ,maxZ;
2763         double totalZ;
2764         double porcent;
2765         wxString tmpString;
2766         minZ    = 0;// _mbarrange->GetStart();
2767         maxZ    = sizeZ;//_mbarrange->GetEnd();
2768         totalZ  = maxZ-minZ+1;
2769
2770
2771 // For each slice..
2772         for ( z=0 ; z<sizeZ ; z++)
2773         {
2774
2775                 porcent = 100.0* (z-minZ)/totalZ;
2776
2777                 tmpString.Printf(_T("Saving Values"));
2778                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2779                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2780                 //_staticTextInformation->SetLabel(tmpString);
2781
2782
2783                 //Extraction data from contours of each slice
2784                 _contourextractdata->SetZtoBeAnalys( z);
2785
2786                 tempVector[1]=z;
2787                 Instant instant(&tempVector);
2788                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2789                 sizeLstContourThings = lstContourThings.size();
2790
2791                 lstManConMod.clear();
2792                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2793                 {
2794                         ContourThing **contourthing = lstContourThings[ii];
2795                         lstManConMod.push_back( (*contourthing)->getModel() );
2796                 }
2797                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2798
2799
2800 //EED004
2801
2802                 int iContourGroup,sizeContourGroup;
2803                 if (typeContourGroup==3) // contour separete
2804                 {
2805                         sizeContourGroup=lstManConModExp.size();
2806                 } else {  // contour AND OR XOR
2807                         sizeContourGroup=1;
2808                 }
2809
2810                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2811                         lstManConModTmp.clear();
2812                         if (typeContourGroup==3) // contour separete
2813                         {
2814                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2815                         } else {  // contour AND OR XOR
2816                                 lstManConModTmp = lstManConModExp;
2817                         }
2818
2819                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2820
2821                         pLstValue.clear();
2822                         pLstValuePosX.clear();
2823                         pLstValuePosY.clear();
2824                         pLstValuePosZ.clear();
2825                         int numberOfPixels;
2826                         _contourextractdata->GetValuesInsideCrown(      &numberOfPixels,
2827                                                                                                                 &pLstValue,
2828                                                                                                                 &pLstValuePosX,
2829                                                                                                                 &pLstValuePosY,
2830                                                                                                                 &pLstValuePosZ);
2831
2832                         std::string temp = directory + "/" + namefile + "-slice";
2833                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2834                         temp = temp + ".txt";
2835
2836                         // LG 14/01/09 : using crea
2837                         wxString filename = crea::std2wx(temp);
2838                         /*filename.Printf(_T("%s"),directory.c_str());
2839                         filename.append(_T("\\"));
2840                         filename.append(_T("%s"),namefile.c_str());
2841                         filename.append(_T("-slice"));
2842                         filename.append(_T("%d"),z);
2843                         filename.append(_T("-cont"));
2844                         filename.append(_T("%d"),iContourGroup);
2845                         filename.append(_T(".txt"));*/
2846                         //                      filename.Printf(temp.c_str());
2847
2848
2849
2850                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2851                         fprintf(pFile,"value \t x \t y \t z\n"  );
2852                         int iLstValue,sizeLstValue=pLstValue.size();
2853                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2854                         {
2855                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2856                         }
2857                         fclose(pFile);
2858                 } // for  iContourGroup
2859         } // for z
2860         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2861         //_staticTextInformation->SetLabel( _T("") );
2862
2863 }
2864
2865 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
2866         wxBusyCursor wait;
2867
2868         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2869         if (typeContourGroup==3)
2870         {
2871                 typeContourGroup=1;
2872         }
2873         _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2874
2875         std::vector<manualBaseModel*> lstManConMod;
2876         std::vector<manualBaseModel*> lstManConModTmp;
2877         std::vector<manualBaseModel*> lstManConModExp;
2878
2879         std::vector<int> tempVector;
2880         _instantPanel->getInstant( tempVector );
2881
2882     vtkImageData *imagedata = _theViewPanel->getImageData();
2883         int ext[6];
2884         imagedata->GetExtent(ext);
2885         int sizeZimage = ext[5]-ext[4]+1;
2886         int z;
2887         int ii,sizeLstContourThings;
2888
2889         double totalZ;
2890         double porcent;
2891
2892         wxString tmpString;
2893
2894
2895         if (selection==0 ) // actual slice
2896         {
2897                 int actualSlice = tempVector[1];
2898                 minZ    = actualSlice;
2899                 maxZ    = actualSlice;
2900         }
2901
2902         totalZ  = maxZ-minZ;
2903
2904
2905         // cleanning image before range
2906         for (z=0; z<minZ; z++){
2907                 _contourextractdata->ResetImageResult(z);
2908         }
2909         // cleanning image after range
2910         for (z=maxZ+1; z<sizeZimage; z++){
2911                 _contourextractdata->ResetImageResult(z);
2912         }
2913
2914
2915 // For each slice..
2916         for ( z=minZ ; z<=maxZ ; z++)
2917         {
2918
2919                 porcent = 100.0* (z-minZ)/totalZ;
2920                 tmpString.Printf(_T("Saving Values"));
2921                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2922                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2923
2924                 //Extraction data from contours of each slice
2925                 _contourextractdata->SetZtoBeAnalys( z);
2926
2927                 tempVector[1]=z;
2928                 Instant instant(&tempVector);
2929                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2930                 sizeLstContourThings = lstContourThings.size();
2931
2932                 lstManConMod.clear();
2933                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2934                 {
2935                         ContourThing **contourthing = lstContourThings[ii];
2936                         lstManConMod.push_back( (*contourthing)->getModel() );
2937                 }
2938                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2939
2940
2941                 int iContourGroup,sizeContourGroup;
2942                 if (typeContourGroup==3) // contour separete
2943                 {
2944                         sizeContourGroup=lstManConModExp.size();
2945                 } else {  // contour AND OR XOR
2946                         sizeContourGroup=1;
2947                 }
2948
2949                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2950                         lstManConModTmp.clear();
2951                         if (typeContourGroup==3) // contour separete
2952                         {
2953                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2954                         } else {  // contour AND OR XOR
2955                                 lstManConModTmp = lstManConModExp;
2956                         }
2957
2958                         _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2959                         _contourextractdata->CalculateImageResult(); // with actual Z
2960
2961                 } // for  iContourGroup
2962         } // for z
2963
2964         (*value) = _contourextractdata->GetVtkImageValueResult();
2965         (*mask)  = _contourextractdata->GetVtkImageMaskResult();
2966
2967 }
2968
2969 std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
2970 {
2971         std::string result="";
2972         if ( image->GetScalarType()==VTK_CHAR )
2973         {
2974                 result="CHAR";
2975         } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
2976                 result="UCHAR";
2977         } else if ( image->GetScalarType()==VTK_FLOAT ){
2978                 result="FLOAT";
2979         } else if ( image->GetScalarType()==VTK_DOUBLE ){
2980                 result="DOUBLE";
2981         } else if ( image->GetScalarType()==VTK_INT ){
2982                 result="INT";
2983         } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
2984                 result="UINT";
2985         } else if ( image->GetScalarType()==VTK_SHORT ){
2986                 result="SHORT";
2987         } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
2988                 result="USHORT";
2989         } else if ( image->GetScalarType()==VTK_LONG ){
2990                 result="LONG";
2991         } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
2992                 result="ULONG";
2993         }
2994         return result;
2995 }
2996
2997 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2998 {
2999         std::string stringType;
3000         double spc[3];
3001         kernelManager->GetSpacing(spc,0);   // returns the spacing of the first image
3002         stringType              = GetStringTypeImage(value);
3003         std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
3004
3005         wxString filename = crea::std2wx(temp);
3006
3007 // Image Value
3008
3009         vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
3010 //EED 2017-01-01 Migration VTK7
3011 #if VTK_MAJOR_VERSION <= 5
3012         valueChInfo->SetInput(value);
3013 #else
3014         valueChInfo->SetInputData(value);
3015 #endif
3016         valueChInfo->SetSpacingScale(spc);
3017         valueChInfo->Update();
3018         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3019
3020 //EED 2017-01-01 Migration VTK7
3021 #if VTK_MAJOR_VERSION <= 5
3022         writerValueImage->SetInput( valueChInfo->GetOutput() );
3023 #else
3024         writerValueImage->SetInputData( valueChInfo->GetOutput() );
3025 #endif
3026         writerValueImage->SetFileName( (const char *)filename.mb_str() );
3027         writerValueImage->SetFileDimensionality( 3 );
3028         writerValueImage->SetCompression(false);
3029         writerValueImage->Write( );
3030
3031 // Image Mask
3032         stringType              = GetStringTypeImage(mask);
3033         temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
3034
3035         // LG 14/01/09 : using crea
3036         filename = crea::std2wx(temp);
3037         //      filename.Printf(_T(temp.c_str()));
3038
3039
3040         vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3041 //EED 2017-01-01 Migration VTK7
3042 #if VTK_MAJOR_VERSION <= 5
3043         maskChInfo->SetInput(mask);
3044 #else
3045         maskChInfo->SetInputData(mask);
3046 #endif
3047         maskChInfo->SetSpacingScale(spc);
3048         maskChInfo->Update();
3049         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3050
3051 //EED 2017-01-01 Migration VTK7
3052 #if VTK_MAJOR_VERSION <= 5
3053         writerMaskImage->SetInput( maskChInfo->GetOutput() );
3054 #else
3055         writerMaskImage->SetInputData( maskChInfo->GetOutput() );
3056 #endif
3057
3058         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3059         writerMaskImage->SetFileDimensionality( 3 );
3060         writerMaskImage->SetCompression(false);
3061         writerMaskImage->Write( );
3062
3063         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3064
3065 }
3066
3067
3068
3069 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3070         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3071                 _theViewPanel->setActualVertical( value);
3072         }
3073         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
3074                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3075         }
3076
3077         changeInstant();
3078 }
3079
3080 void wxContourMainFrame::onSnakePressed(){
3081         std::vector<double> vecX;
3082         std::vector<double> vecY;
3083         std::vector<double> vecZ;
3084         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3085
3086         if (vecX.size()!=0){
3087                 std::vector<int> tempVector;
3088                 _instantPanel->getInstant( tempVector );
3089                 int i,size=vecZ.size();
3090                 int actualSlice = tempVector[1];
3091                 for ( i=0 ; i<size ; i++ )
3092                 {
3093                         vecZ[i] = actualSlice;
3094                 } // for
3095
3096                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3097                 wxPanel* panel = new wxPanel(dialog,-1);
3098                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3099          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3100                 dialog->ShowModal();
3101         } // if
3102
3103 }
3104
3105 void wxContourMainFrame::saveFileWithContoursAutomatique()
3106 {
3107         std::string filename = kernelManager->getCurrentFileName();
3108         if(filename.compare("")!=0){
3109                 saveFileWithContours(filename);
3110         }else{
3111                 onSave();
3112         }
3113 }
3114
3115 void wxContourMainFrame::ShowToolsPanel(bool show)
3116 {
3117         _pannew->Show(show);
3118 }
3119
3120 void wxContourMainFrame::SetContourGroup(int contourGroup)
3121 {
3122         _contourGroup = contourGroup;
3123 }
3124
3125 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3126 {
3127         if      (_viewMaskImagePanel==NULL)
3128         {
3129                 _contourextractdata = new ContourExtractData(true);
3130                 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3131 //              double range[2];
3132 //              _theViewPanel->getImageData()->GetScalarRange(range);
3133                 //int min = (int)floor (range[0]);
3134                 //int max = (int)ceil (range[1]);
3135
3136 //EED 2017-12-17
3137                 int min = 254;
3138                 int max = 256;
3139
3140                 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1,  0);
3141                 _viewMaskImage = new ThresholdImageView();
3142                 _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
3143                 _viewMaskImage->SetminMaxValue( min, max);
3144                 _viewMaskImage->SetBaseColor( 0,0,1 );
3145
3146
3147                 std::vector<int> colorbarposition;
3148                 colorbarposition.push_back( -999 );
3149                 colorbarposition.push_back( -999 );
3150                 _viewMaskImage->SetColorBarPosition( colorbarposition );
3151                 double spc[3];
3152                 _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3153                 _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3154
3155                 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3156                 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3157                 _viewMaskImage->onThresholdChangeOpacity( 25 );
3158         }
3159         return _viewMaskImagePanel;
3160 }
3161
3162
3163 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3164 {
3165         if      (_viewColorLayerImagePanel==NULL)
3166         {
3167                 double range[2];
3168                 _theViewPanel->getImageData()->GetScalarRange(range);
3169                 int min = (int)floor (range[0]);
3170                 int max = (int)ceil (range[1]);
3171                 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
3172                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
3173         //    std::vector<double> range = bbGetInputlstRangeForColorBar();
3174         //    clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
3175                 std::vector<int> colorbarposition;
3176                 colorbarposition.push_back( 50 );
3177                 colorbarposition.push_back( 105 );
3178                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
3179         //    std::vector<double> base_color;
3180         //    _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
3181         //    std::vector<double> grey_level_boundaries;
3182         //    clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
3183                 std::vector<double> transparence_level_boundaries;
3184                 transparence_level_boundaries.push_back(0);
3185                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
3186                 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
3187 //              _viewColorLayerImagePanel->SetFittingMode( 3 );
3188         }
3189         return _viewColorLayerImagePanel;
3190 }
3191
3192 void wxContourMainFrame::SetColorLayerImage(vtkImageData* img)
3193 {
3194         if (_viewColorLayerImagePanel!=NULL)
3195         {
3196                 if (img!=NULL)
3197                 {
3198                         _viewColorLayerImagePanel->SetActive(true);
3199                         _viewColorLayerImagePanel->SetImage( img );
3200 //                      RefreshInterface();
3201                 } // img
3202         } // _viewColorLayerImagePanel
3203 }
3204
3205 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3206 {
3207         if      (_viewThresholdImagePanel==NULL)
3208         {
3209                 double range[2];
3210                 _theViewPanel->getImageData()->GetScalarRange(range);
3211                 int min                                         = (int)floor (range[0]);
3212                 int max                                         = (int)ceil (range[1]);
3213                 int start                                       = (max+min)/2 - (max-min)*0.25;
3214                 int end                                         = (max+min)/2 + (max-min)*0.25;
3215                 _viewThresholdImagePanel        = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
3216                 _viewThresholdImage             = new ThresholdImageView();
3217                 _viewThresholdImage->SetminMaxValue(start,end);
3218 //              _viewThresholdImage->SetminMaxValue(range[0],range[1]);
3219                 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3220                 std::vector<int> colorbarposition;
3221                 colorbarposition.push_back( 10 );
3222                 colorbarposition.push_back( 105 );
3223                 _viewThresholdImage->SetColorBarPosition( colorbarposition );
3224                 double spc[3];
3225                 _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3226                 _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3227
3228                 _viewThresholdImage->SetBaseColor( 1,0,0 );
3229                 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3230                 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3231                 _viewThresholdImage->onThresholdChangeOpacity( 25 );
3232                 RefreshInterface();
3233         }
3234         return _viewThresholdImagePanel;
3235 }
3236
3237 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3238 int wxContourMainFrame::getType ()
3239 {
3240         int tipo = 0;
3241         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3242
3243         if(!currentSelection.empty())
3244         {
3245                 std::string cloneName = currentSelection [0];
3246                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3247                 tipo = manualModel-> GetTypeModel();
3248         }
3249         return tipo;
3250 }
3251
3252 double wxContourMainFrame::getContourSizeInPixels()
3253 {
3254         double contourSize = 0;
3255
3256         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();        if(!currentSelection.empty())
3257         if(!currentSelection.empty())
3258         {
3259                 std::string cloneName = currentSelection [0];
3260
3261                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3262
3263 // EED 2017-05-30
3264 //              contourSize = manualModel->GetPathSize();
3265                 double spc[3];
3266                 spc[0]=1;
3267                 spc[1]=1;
3268                 spc[2]=1;
3269                 contourSize = manualModel->GetPathSize( spc );
3270         }
3271         return contourSize;
3272 }
3273
3274 manualBaseModel * wxContourMainFrame::getContour ()
3275 {
3276         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3277
3278         if(!currentSelection.empty())
3279         {
3280                 std::string cloneName = currentSelection [0];
3281                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3282                 return manualModel;
3283         }
3284         return NULL;
3285 }
3286 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3287 {
3288         std::string labelAscii(label.ToAscii());
3289         int pos = labelAscii.find(" ");
3290
3291         int j;
3292
3293         for (j=0 ; pos != string::npos;j++)
3294         {
3295                 labelAscii.replace( pos, 1, "_" );
3296                 pos= labelAscii.find(" ");
3297         }
3298
3299         manualModel -> SetLabel(labelAscii);
3300 }
3301 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3302 {
3303 // EED 2017-05-30
3304 //      double sizeInPixel      = manualModel ->GetPathSize(  );
3305         double spc[3];
3306         spc[0]=1; // ????
3307         spc[1]=1; // ????
3308         spc[2]=1; // ????
3309         double sizeInPixel      = manualModel ->GetPathSize( spc );
3310
3311         double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3312         double realContourSize  = sizeInPixel*onePixelRealSize;
3313         manualModel ->SetRealSize(realContourSize);
3314 }
3315
3316 double wxContourMainFrame::onePixelSize( double value)
3317 {
3318         return _onePixelSize = value;
3319 }
3320
3321 std::string wxContourMainFrame::GetFileLocation()
3322 {
3323         return _fileLocation;
3324 }
3325
3326 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3327 {
3328         _fileLocation = newFileLocation;
3329         std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3330
3331 //EED 2019-12-17
3332         kernelManager->setCurrentFileName(_fileLocation);
3333 }
3334 //------------------------------------------------------------------------------------------------------------
3335
3336
3337
3338
3339
3340
3341
3342
3343 void wxContourMainFrame::FlipSelectedContours(int flipDirection)
3344 {
3345         FlipLstOfContours(
3346                             (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
3347                             flipDirection
3348                           );
3349
3350 }
3351
3352 void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
3353 {
3354         FlipLstOfContours(
3355                             (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
3356                             flipDirection
3357                           );
3358 }
3359
3360 void wxContourMainFrame::FlipAllContours(int flipDirection)
3361 {
3362         FlipLstOfContours(
3363                             kernelManager->GetLstNameThings() ,
3364                             flipDirection
3365                           );
3366 }
3367
3368 void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
3369 {
3370         int ext[6];
3371         getImageData()->GetExtent(ext);
3372         int sizeX = ext[1]-ext[0];
3373         int sizeY = ext[3]-ext[2];
3374
3375
3376         int i,sizeLstNameThings;
3377         int ii,sizeLstPoints;
3378
3379         sizeLstNameThings       = lstNameThings.size();
3380         for (i=0 ; i<sizeLstNameThings ; i++)
3381         {
3382                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3383                 if (flipDirection==0)
3384                 {
3385                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3386                 } else {
3387                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3388                 }
3389         }// for i  list of Things
3390
3391         //-- Static Contours
3392
3393         lstNameThings           = kernelManager->GetLstNameThingsStatic();
3394         sizeLstNameThings       = lstNameThings.size();
3395         for (i=0 ; i<sizeLstNameThings ; i++)
3396         {
3397                 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3398                 if (flipDirection==0)
3399                 {
3400                         manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3401                 } else {
3402                         manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3403                 }
3404         }// for i  list of static things
3405 }
3406
3407 void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
3408 {
3409         saveState();
3410
3411         if (typeContourFlip==0) //
3412         {
3413                 FlipSelectedContours(flipDirection);
3414         }
3415
3416         if (typeContourFlip==1) //
3417         {
3418                 FlipActualSliceContours(flipDirection);
3419         }
3420
3421         if (typeContourFlip==2) //
3422         {
3423                 FlipAllContours(flipDirection);
3424         }
3425         RefreshInterface();
3426 }
3427
3428 void wxContourMainFrame::SetXY(int x, int y)
3429 {
3430         _theViewPanel->SetXY(x,y);
3431 }
3432
3433 wxVtkBaseView* wxContourMainFrame::GetWxVtkBaseView()
3434 {
3435         if (_theViewPanel!=NULL)
3436         {
3437                 return _theViewPanel->getWxVtkBaseView();;
3438         } else {
3439                 return NULL;
3440         }
3441 }
3442
3443
3444