lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16
  17 #include <manualContour.h>
  18 //#include "ImageSourceThing.h"
  19 //#include "wxContour_ActionCommandsID.h"
  20 //#include "OutlineModelBuilder.h"
  21 //#include "wxContourEventHandler.h"
  22 #include <creaWx.h>
  23
  24 //----------------------------------------------------------------------------------------------------------------
  25 // Class implementation
  26 //----------------------------------------------------------------------------------------------------------------
  27 /** @file wxContourMainFrame.cxx */
  28
  29         //------------------------------------------------------------------------------------------------------------
  30         // Constructors & Destructors
  31         //------------------------------------------------------------------------------------------------------------
  32
  33 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  34 char wxContourMainFrame::COPY = 'C';
  35
  36         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  37                 //: wxPanel(parent, id, title, pos, size, style)
  38                 //: wxWindow(parent, id, pos, size, style)
  39                 : wxPanel(parent, id, pos, size, style)
  40         {
  41                 m_mgr.SetManagedWindow(this);
  42                 _creatingContoursActive         = false;
  43                 _theViewPanel                           = NULL;
  44 //              _modelManager                           = NULL;
  45                 _instantPanel                           = NULL;
  46 //              _buttonsBar                                     = NULL;
  47 //              _gridPanel                                      = NULL;
  48 //              _drawToolsPanel                         = NULL;
  49 //              _operationsToolsPanel           = NULL;
  50                 //_autoFormsPanel                               = NULL;
  51 //              _standardToolsPanel                     = NULL;
  52 //              _editionToolsPanel                      = NULL;
  53 //              _listViewPanel                          = NULL;
  54 //              _sceneManager                           = NULL;
  55                 //_actualInstant                                = NULL;
  56                 _numberOfVariablesStatistics = 6+1;
  57
  58                 _refLineControl                         = NULL;
  59                 _refLineModel                           = NULL;
  60                 _refLineView                            = NULL;
  61
  62                 // set up default notebook style
  63 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  64 //              m_notebook_theme = 0;
  65                 //wxContour_ActionCommandsID a;
  66
  67         }
  68
  69         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  70                 : wxPanel(parent, id, pos, size, style)
  71         {
  72                 m_mgr.SetManagedWindow(this);
  73                 _creatingContoursActive         = false;
  74                 _theViewPanel                           = NULL;
  75
  76                 _instantPanel                           = NULL;
  77                 _refLineControl                         = NULL;
  78                 _refLineModel                           = NULL;
  79                 _refLineView                            = NULL;
  80
  81                 // set up default notebook style
  82                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  83                 m_notebook_theme = 0;
  84                 //wxContour_ActionCommandsID a;
  85                 _numberOfVariablesStatistics = 7;
  86
  87                 _datadir = datadir;
  88
  89
  90                 inredo = 0;
  91                 inundo = 0;
  92
  93                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
  94                 _performingOperation = new PerformingOperation();
  95
  96                 if(images.size() > 0)
  97                 {
  98                         this->setVectImages(images);
  99                 }
 100
 101 }
 102
 103 void wxContourMainFrame::setVectImages( std::vector<vtkImageData*> images ){
 104
 105         #if defined(__GNUC__)
 106                 std::string str_home(getenv("HOME"));
 107         #elif defined(_WIN32)
 108                         std::string str_home(getenv("USERPROFILE"));
 109         #endif
 110                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 111
 112         std::vector<std::string> conceptNameVect;
 113         std::vector<int> conceptSizeVect;
 114
 115         notebook = this->createNotebook();
 116
 117
 118         kernelManager = new KernelManagerContour( images , _datadir+"/data/" , strCreaContourDataTmp );
 119
 120
 121         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 122         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 123
 124 //-------------------------------------------------------------
 125         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 126         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 127
 128
 129         double val = _theViewPanel->getCurrentDeep();
 130         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 131         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 132         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 133         //*******************changeInstant();
 134         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 135
 136         this->configurePanels( );
 137
 138 }
 139
 140
 141         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
 142                 if(instance == NULL){
 143                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 144                 }
 145                 return instance;
 146         }
 147
 148         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 149         {
 150                 return kernelManager->getVectImages();
 151         }
 152
 153         wxContourMainFrame* wxContourMainFrame :: getInstance()
 154         {
 155                 return instance;
 156         }
 157
 158         void wxContourMainFrame :: resetInstance()
 159         {
 160                 delete instance;
 161                 instance = NULL;
 162         }
 163
 164         wxContourMainFrame :: ~wxContourMainFrame()
 165         {
 166
 167                 _pannew->Close();
 168                 interfMainPanel::resetInstance();
 169                 //_pannew->Destroy();
 170                 //delete _pannew;
 171
 172                 m_mgr.UnInit();
 173                 //delete m_mgr;
 174
 175                 //El problema al cerrar la aplicacion puede estar asociado
 176                 //a que  wxAUINotebook esta en la aplicacion
 177                 //principal (wxContourGUIExample)tambien
 178                 //EED????               delete _theViewPanel;
 179                 //EED????               delete _instantPanel;
 180                 //EED????               delete _buttonsBar;
 181                 //EED????               delete _actualInstant;
 182                 //EED????               delete _sceneManager;
 183         }
 184
 185
 186         //------------------------------------------------------------------------------------------------------------
 187         // Creational and initialization methods using WxAui
 188         //------------------------------------------------------------------------------------------------------------
 189         //
 190         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 191         {
 192                 wxSize client_size = GetClientSize();
 193                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 194                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 195                 return noteBook;
 196         }
 197
 198
 199         //------------------------------------------------------------------------------------------------------------
 200         // Creational and initialization methods
 201         //------------------------------------------------------------------------------------------------------------
 202         bool wxContourMainFrame :: configurePanels( )
 203         {
 204                 bool configured = _theViewPanel!=NULL;
 205
 206                 configured &= _theViewPanel!=NULL;
 207                 if( _theViewPanel!=NULL )
 208                 {
 209                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 210                         m_mgr.Update();
 211                 }
 212
 213
 214                 if( configured )
 215                 {
 216                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 217                         m_mgr.Update();
 218                 }
 219
 220                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 221                 m_mgr.Update();
 222
 223                 SetMinSize(wxSize(300,300));
 224                 m_mgr.Update();
 225                 return configured;
 226         }
 227
 228
 229         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 230                 {
 231                 bool configured = panel!=NULL;
 232                 configured &= panel!=NULL;
 233
 234                 if( configured )
 235                 {
 236                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 237                         m_mgr.Update();
 238                 }
 239                 return configured;
 240         }
 241
 242         //------------------------------------------------------------------------------------------------------------
 243         //  Attributes getters and setters
 244         //------------------------------------------------------------------------------------------------------------
 245
 246
 247
 248         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 249         {
 250                 _instantPanel = theInstantChooserPanel;
 251         }
 252
 253 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 254 //      {
 255 //              _buttonsBar = theButtonsBar;
 256 //      }
 257
 258 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 259 //      {
 260 //              _gridPanel = theGridPanel;
 261 //      }
 262
 263 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 264 //      {
 265 //              _drawToolsPanel = theDrawToolsPanel;
 266 //      }
 267
 268 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 269 //      {
 270 //              _operationsToolsPanel = theOperationsToolsPanel;
 271 //      }
 272
 273 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 274 //      {
 275 //              _autoFormsPanel = theAutoFormsPanel;
 276 //      }
 277
 278 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 279 //      {
 280 //              _standardToolsPanel= theStandardToolsPanel;
 281 //      }
 282
 283 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 284 //      {
 285 //              _editionToolsPanel =  theEditionToolsPanel;
 286 //      }
 287
 288 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 289 //      {
 290 //              _listViewPanel = theListViewPanel;
 291 //      }
 292
 293
 294
 295 void wxContourMainFrame::onCreateContourSpline( ){
 296
 297         //JCP 20-10-08 Undo redo implementation
 298         saveState();
 299         //JCP 20-10-08 Undo redo implementation
 300         createContour( 1 );
 301
 302 }
 303 void wxContourMainFrame::onCreateContourRectangle( ){
 304     //JCP 20-10-08 Undo redo implementation
 305         saveState();
 306         //JCP 20-10-08 Undo redo implementation
 307         createContour( 2 );
 308 }
 309 void wxContourMainFrame::onCreateContourCircle( ){
 310     //JCP 20-10-08 Undo redo implementation
 311         saveState();
 312         //JCP 20-10-08 Undo redo implementation
 313         createContour( 3 );
 314 }
 315
 316 void wxContourMainFrame::onCreateContourLine( ){
 317     //JCP 20-10-08 Undo redo implementation
 318         saveState();
 319         //JCP 20-10-08 Undo redo implementation
 320         createContour( 6 );
 321 }
 322
 323 //------------------------------------------------------------------------------------------------------------
 324
 325 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 326 {
 327         //Creating the manualContourModel and including in the model
 328         manualContourModel * manModelContour = factoryManualContourModel(panel );
 329
 330         std::vector<int> instantVector;
 331         _instantPanel->getInstant( instantVector );
 332         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 333
 334         /*std::vector<int> instantVector;
 335         _instantPanel->getInstant( instantVector );
 336         std::string theName;
 337         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 338         bool addedModel = theName.compare("") != 0;//??
 339
 340         if( addedModel )
 341         {
 342                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 343                 _theViewPanel->getSpacing(spc);
 344                 //Adding the manualContourControler to interface objects structure
 345                 //Adding the manualViewContour to interface objects structure
 346                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 347                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 348         }
 349 }
 350 void wxContourMainFrame :: createContour( int typeContour )
 351 {
 352         //Creating the manualContourModel and including in the model
 353         manualContourModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 354
 355
 356         std::vector<int> instantVector;
 357         _instantPanel->getInstant( instantVector );
 358         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 359
 360         /*std::vector<int> instantVector;
 361         _instantPanel->getInstant( instantVector );
 362         std::string theName;
 363         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 364         bool addedModel = theName.compare("") != 0;//??
 365         if( addedModel )
 366         {
 367                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 368                 _theViewPanel->getSpacing(spc);
 369                 //Adding the manualContourControler to interface objects structure
 370                 //Adding the manualViewContour to interface objects structure
 371                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 372                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 373         }
 374
 375 }
 376 manualContourModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 377
 378         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 379         manualContourModel *manModelContour=NULL;
 380         manModelContour = manModelContourBullEye;
 381         if (panel!=NULL){
 382                 int iCrown,sizeCrowns,iSector,sizeSectors;
 383                 double radioA,radioB,ang,angDelta ;
 384                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 385                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 386                 {
 387                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 388                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 389                         if (iCrown==sizeCrowns-1)
 390                         {
 391                                 radioA  = 0;
 392                         } else {
 393                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 394                         }
 395                         radioA=radioA/100.0;
 396                         radioB=radioB/100.0;
 397                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 398                         {
 399                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 400                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 401                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 402                         } // for iSector
 403                 } // for iCrown
 404         } // if _panelBullEyeOptions
 405
 406         return manModelContour;
 407 }
 408 void wxContourMainFrame :: saveState(){
 409
 410         std::string temp = kernelManager->saveState();
 411         saveFileWithContours(temp);
 412 }
 413
 414 void wxContourMainFrame::onDeleteContour(){
 415         //JCP 20-10-08 Undo redo implementation
 416                 saveState();
 417                 //JCP 20-10-08 Undo redo implementation
 418
 419                 std::vector<std::string> lstKeyNameToBeErase;
 420                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 421                 deleteContours( lstKeyNameToBeErase );
 422 /*JCP 19 - 11 - 08
 423                 int i,size=_sceneManager->getSelectedObjects().size();
 424                 for(i=0;i<size;i++)
 425                 {
 426                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 427                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 428                         if ( ispartofstaticlist>=0 )
 429                         {
 430                                 std::vector<int> tempVector;
 431                                 _instantPanel->getInstant( tempVector );
 432                                 Instant instant(&tempVector);
 433                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 434                         }
 435                 }
 436
 437                 std::vector<std::string> lstKeyName;
 438                 std::vector<std::string> lstKeyNameActualSlice;
 439                 std::vector<std::string> lstKeyNameToBeErase;
 440
 441                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 442                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 443                 int k,kSize=lstKeyNameToBeErase.size();
 444                 int j,jSize=lstKeyNameActualSlice.size();
 445                 bool ok;
 446                 for (k=0;k<kSize; k++)
 447                 {
 448                         ok=false;
 449                         for (j=0;j<jSize; j++)
 450                         {
 451                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 452                                 {
 453                                         ok=true;
 454                                 }
 455                         } // for j
 456                         if (ok==true)
 457                         {
 458                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 459                         } // if ok
 460                 } // for k
 461
 462                 deleteContours( lstKeyName );
 463 JCP 19 - 11 - 08*/
 464 }
 465
 466 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 467 {
 468         int i,size=keyNamesVector.size();
 469         for (i=0;i<size;i++)
 470         {
 471                 deleteContour( keyNamesVector[i] );
 472         }
 473 }
 474
 475 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 476         /*
 477         manualContourModel                      * cModel;
 478         manualViewBaseContour           * cViewer;
 479         manualContourBaseControler      * cControler;
 480
 481         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 482         cControler      = conwrapviewControl->getControler();*/
 483
 484         //JCP 21 - 11 - 2008
 485         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 486         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 487
 488         if (isedit  && ispartofstaticlst)
 489         {
 490                 _theViewPanel->removeFromScene(theKeyName);
 491
 492                 kernelManager->deleteCModel(theKeyName);
 493                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 494                 //cViewer               = conwrapviewControl->getViewer();
 495                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 496                 //cControler* conwrapviewControl->getControler();
 497 //EED Borrame
 498 //FILE *ff = fopen("c:/temp/wxVtkBaseView_SceneManagerStadistics.txt","a+");
 499 //fprintf(ff,"EED wxContourEventHandler::deleteContours() \n" );
 500 //fprintf(ff,"    %s %p\n",keyNamesVector[i].c_str(),  cControler );
 501 //fclose(ff);
 502         //      delete cModel;
 503         //      delete cViewer;
 504         //      delete cControler;
 505         } // if editable
 506 //JCP 21 - 11 - 08
 507 }
 508
 509 void wxContourMainFrame::onDeleteContoursActSlice(){
 510         //JCP 20-10-08 Undo redo implementation
 511         saveState();
 512         //JCP 20-10-08 Undo redo implementation
 513         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 514 }
 515 void wxContourMainFrame::onDeleteAllContours(){
 516         //JCP 20-10-08 Undo redo implementation
 517         saveState();
 518         deleteAllContours();
 519 }
 520 void wxContourMainFrame::deleteAllContours(){
 521         //JCP 20-10-08 Undo redo implementation
 522
 523         wxBusyCursor wait;
 524         std::vector<int> tempVector;
 525         _instantPanel->getInstant( tempVector );
 526
 527 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 528 //              the values in GetStart and GetEnd will then not be initialize also.
 529 //              We use instead the values given when initializing the _deletepanel.
 530
 531         //int minZ = _mbarrangeDeleteAll->GetStart();
 532         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 533         int minZ, maxZ;
 534
 535         minZ = 0;
 536         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 537
 538 //JCP --08-09-2008
 539
 540         _theViewPanel->getSceneManager()->removeSceneContours( );
 541         _theViewPanel->getSceneManager()->removeAllOutlines();
 542         kernelManager->removeAllOutlines();
 543 //JCP --08-09-2008
 544         /*
 545         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 546         {
 547                 _theViewPanel->getSceneManager()->removeSceneContours( );
 548                 _modelManager->removeAllOutlines();
 549                 _theViewPanel->getSceneManager()->removeAllOutlines();
 550
 551         } else {
 552                 for ( z=minZ ; z<=maxZ ; z++)
 553                 {
 554                         tempVector[1]=z;
 555                         Instant instant(&tempVector);
 556                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 557
 558                         sizeLstContourThings = lstContourThings.size();
 559                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 560                         {
 561                                 ContourThing **contourthing = lstContourThings[ii];
 562                                 deleteContour( (*contourthing)->getName() );
 563                         } //for ii
 564                 }// for z
 565         } // if
 566 JCP --08-09-2008 */
 567 }
 568
 569 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 570         _instantPanel->setConceptValue(name, value);
 571 }
 572
 573 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 574         return _instantPanel->getLastConceptData();
 575 }
 576 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 577         return _instantPanel->getIfConceptCheckedAt( name, pos );
 578 }
 579
 580 void wxContourMainFrame::changeInstant()
 581 {
 582                 std::vector<int> instantVect;
 583                 _instantPanel->getInstant( instantVect );
 584 //              Instant * theInstant = new Instant ( &instantVect );
 585
 586                 //Setting the actual instant
 587                 //_actualInstant = theInstant;
 588
 589                 kernelManager->setInstant(instantVect);
 590                 //_modelManager->setInstant( _actualInstant );
 591
 592                 updateInstantOutlines();
 593                 updateInstantImageData();
 594                 updateInstantAxes();
 595
 596
 597 }
 598 void wxContourMainFrame :: updateInstantOutlines(){
 599
 600         _theViewPanel->removeSceneContours();
 601         _theViewPanel->addNameWrapperToScene();
 602
 603         //for( int i=0; i<size; i++)
 604         //{
 605         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 606         //}
 607 }
 608
 609 int wxContourMainFrame::getNamesWrappingSize(){
 610         return kernelManager->getNamesWrappingSize();
 611 }
 612 std::string wxContourMainFrame::getNameWrapping(int i){
 613         return kernelManager->getNameWrapping(i);
 614 }
 615
 616 void wxContourMainFrame::updateInstantImageData(){
 617         std::vector<int> inst;
 618         _instantPanel->getInstant(inst);
 619
 620         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 621         if(img!=NULL){
 622                 _theViewPanel->changeImage(img);
 623                 showAxis(false);
 624         }else{
 625                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 626                 _theViewPanel->setImageSlice(z);
 627         }
 628 }
 629
 630 void wxContourMainFrame::updateInstantAxes(){
 631 }
 632
 633 void wxContourMainFrame::onChangeDeep(int val){
 634         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 635         changeInstant();
 636 }
 637
 638
 639 void wxContourMainFrame::onCopy(){
 640         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 641
 642         std::vector<int> tempVector;
 643         _instantPanel->getInstant( tempVector );
 644     _performingOperation->reset();
 645         _performingOperation->setStartCommand( COPY );
 646         _performingOperation->setStartOperationInstantVector( tempVector );
 647         _performingOperation->setKeyNamesOperationElems( currentSelection );
 648 }
 649
 650 void wxContourMainFrame::onPaste(){
 651
 652
 653         char theStartCommand = _performingOperation->getStartCommand();
 654         if (  theStartCommand == COPY )
 655         {
 656                 //JCP 20-10-08 Undo redo implementation
 657                 saveState();
 658                 //JCP 20-10-08 Undo redo implementation
 659                 std::vector<int> tempVector;
 660                 _instantPanel->getInstant( tempVector );
 661                 _performingOperation->setEndOperationInstantVector ( tempVector );
 662                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 663                 int i,size = elems.size();
 664                 for( i=0; i<size; i++ )
 665                 {
 666                         createCopyContourOf( elems[i], tempVector, i>0 );
 667                 }
 668         }
 669 }
 670 void wxContourMainFrame::onUndo(){
 671         std::string filename;
 672         if(kernelManager->onUndoSaveFile(filename)){
 673                 saveFileWithContours(filename);
 674         }
 675         if(kernelManager->onUndo(filename)){
 676                 loadState(filename);
 677         }
 678 }
 679 void wxContourMainFrame::onRedo(){
 680         std::string filename;
 681         if(kernelManager->onRedo(filename)){
 682                 loadState(filename);
 683         }
 684
 685 }
 686 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 687 {
 688         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 689         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 690         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 691 }
 692
 693 ///AD: 03-09    Copy the object and apply the given transformation
 694 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 695 {
 696         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 697         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 698
 699         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 700         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 701
 702         double pnt1X = refPoint1->GetX();
 703         double pnt1Y = refPoint1->GetY();
 704 //      double pnt1Z = refPoint1->GetZ();
 705         double pnt2X = refPoint2->GetX();
 706         double pnt2Y = refPoint2->GetY();
 707 //      double pnt2Z = refPoint2->GetZ();
 708
 709         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 710         vtkTransform *t = vtkTransform::New();
 711
 712         t->PostMultiply();
 713         t->Identity();
 714         t->Translate(-pnt1X, -pnt1Y, 0);
 715         t->RotateZ(-angle);
 716         t->Scale(-1,1,1);
 717         t->RotateZ(angle);
 718         t->Translate(pnt1X, pnt1Y, 0);
 719         t->Update();
 720
 721         int i,size=manualModel->GetSizeLstPoints();
 722         for (i=0;i<size;i++)
 723         {
 724                 manualPoint * mp = manualModel->GetManualPoint(i);
 725                 float vecIn[3];
 726                 float vecOut[3];
 727                 vecIn[0]=mp->GetX();
 728                 vecIn[1]=mp->GetY();
 729                 vecIn[2]=mp->GetZ();
 730                 t->TransformPoint( vecIn, vecOut );
 731                 mp->SetPointX( vecOut[0] );
 732                 mp->SetPointY( vecOut[1] );
 733                 mp->SetPointZ( vecOut[2] );
 734         }
 735
 736         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 737 }
 738
 739 void wxContourMainFrame ::loadState(std::string filename){
 740         char tmp[255];
 741         FILE *pFile=fopen(filename.c_str(),"r+");
 742
 743         fscanf(pFile,"%s",tmp); // --CreaContour--
 744
 745         fscanf(pFile,"%s",tmp); // Version
 746         fscanf(pFile,"%s",tmp); // 1.0.1
 747         std::string version(tmp);
 748
 749         deleteAllContours();
 750
 751         openContours(pFile,false);
 752         if (version!="1.0.0"){
 753                 openContours(pFile,true);
 754         }
 755
 756         fclose(pFile);
 757
 758         //_theViewPanel->getSceneManager()->removeSceneContours();
 759         //changeInstant();
 760
 761 }
 762
 763 void wxContourMainFrame::onLoad(){
 764         char tmp[255];
 765         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 766         if (dialog.ShowModal() == wxID_OK)
 767         {
 768                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 769                 FILE *pFile=fopen(fileNameContourROI.c_str(),"r+");
 770
 771                 fscanf(pFile,"%s",tmp); // --CreaContour--
 772
 773                 fscanf(pFile,"%s",tmp); // Version
 774                 fscanf(pFile,"%s",tmp); // 1.0.1
 775                 std::string version(tmp);
 776
 777                 openContours(pFile,false);
 778                 if (version!="1.0.0"){
 779                         openContours(pFile,true);
 780                 }
 781 //                        _theViewPanel->getSceneManager()->openFileWithContours(ff);
 782
 783                 fclose(pFile);
 784         }
 785         _theViewPanel->getSceneManager()->removeSceneContours();
 786         changeInstant();
 787 }
 788 void wxContourMainFrame::onSave(){
 789         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
 790         if (dialog.ShowModal() == wxID_OK)
 791         {
 792                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 793                 kernelManager->setCurrentFileName(fileNameContourROI);
 794                 saveFileWithContours( fileNameContourROI );
 795         }
 796 }
 797 void wxContourMainFrame::saveFileWithContours( std::string filename ){
 798
 799         FILE *pFile=fopen(filename.c_str(),"w+");
 800         std::vector< std::string > lstNameThings;
 801         int i,sizeLstNameThings;
 802
 803         fprintf(pFile,"--CreaContour--\n");
 804         fprintf(pFile,"Version %s\n", "1.0.1" );
 805
 806         // Normal Contours
 807         lstNameThings           = kernelManager->GetLstNameThings();
 808         sizeLstNameThings       = lstNameThings.size();
 809         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
 810         for (i=0 ; i<sizeLstNameThings ; i++)
 811         {
 812                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 813                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 814         }// for i
 815
 816         //-- Contours Statics
 817         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 818         sizeLstNameThings       = lstNameThings.size();
 819         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
 820         for (i=0 ; i<sizeLstNameThings ; i++)
 821         {
 822                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 823                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 824         }// for i
 825         fclose(pFile);
 826 }
 827
 828 void wxContourMainFrame::openContours( FILE *pFile, bool staticContour ){
 829         char tmp[255];
 830         fscanf(pFile,"%s",tmp); // NumberOfContours
 831         fscanf(pFile,"%s",tmp); // ##
 832         int numberOfContours = atoi(tmp);
 833
 834         std::vector<int> instantVector;
 835         int typeContourModel;
 836         manualContourModel *manModelContour;
 837         int typeView;
 838
 839         int i;
 840         for (i=0;i<numberOfContours;i++)
 841         {
 842                 instantVector.clear();
 843                 fscanf(pFile,"%s",tmp); // Instant
 844
 845                 fscanf(pFile,"%s",tmp); // 1
 846                 instantVector.push_back( atoi(tmp) );
 847                 fscanf(pFile,"%s",tmp); // 2
 848                 instantVector.push_back( atoi(tmp) );
 849                 fscanf(pFile,"%s",tmp); // 3
 850                 instantVector.push_back( atoi(tmp) );
 851                 fscanf(pFile,"%s",tmp); // 4
 852                 instantVector.push_back( atoi(tmp) );
 853                 fscanf(pFile,"%s",tmp); // 5
 854                 instantVector.push_back( atoi(tmp) );
 855                 fscanf(pFile,"%s",tmp); // 6
 856                 instantVector.push_back( atoi(tmp) );
 857
 858
 859                 fscanf(pFile,"%s",tmp); // TypeContourModel
 860                 fscanf(pFile,"%s",tmp); // ##
 861                 typeContourModel = atoi(tmp);
 862
 863                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 864                 manModelContour->Open(pFile);
 865
 866                 fscanf(pFile,"%s",tmp); // TypeView
 867                 fscanf(pFile,"%s",tmp); // ##
 868                 typeView = atoi(tmp);
 869
 870
 871 //                      if (typeView==1)
 872 //                      {
 873 //                      }
 874
 875
 876                 std::string theName;
 877                 theName = kernelManager->createOutline( manModelContour, instantVector );
 878                 bool addedModel = theName.compare("") != 0;
 879                 if( addedModel )
 880                 {
 881                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 882                         _theViewPanel->getSpacing(spc);
 883                         //Adding the manualContourControler to interface objects structure
 884                         //Adding the manualViewContour to interface objects structure
 885                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 886                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 887                 }
 888
 889                 if (staticContour==true)
 890                 {
 891                         Instant instant(&instantVector);
 892                         kernelManager->changeContourOfManager( theName , &instant );
 893                 }
 894
 895         }// for  numberOfContours
 896
 897 }
 898
 899 void wxContourMainFrame::RefreshInterface(){
 900         changeInstant();
 901         _theViewPanel->RefreshInterface();
 902         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
 903         //wxvtk2dbaseview->Refresh();
 904 }
 905
 906 vtkImageData* wxContourMainFrame::getImageData(){
 907         return _theViewPanel->getImageData();
 908 }
 909
 910 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
 911 {
 912         //JCP 20-10-08 Undo redo implementation
 913         saveState();
 914         //JCP 20-10-08 Undo redo implementation
 915
 916         wxBusyCursor wait;
 917         int                                     x                                       = _theViewPanel->GetX();
 918         int                                     y                                       = _theViewPanel->GetY();
 919         int                                     z                                       = _theViewPanel->GetZ();
 920         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
 921         RefreshInterface();
 922 }
 923
 924 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
 925 {
 926
 927         int typeofcontour = 1;
 928         //Image Data
 929         vtkImageData    *imagedata      = getImageData();
 930
 931         //Tipo de pixeles a utilizar internamente en ITK
 932   typedef   float  InternalPixelType;
 933   const     unsigned int    Dimension = 2;
 934   typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
 935
 936   //Tipo de pixeles de salida 1
 937   typedef unsigned char OutputPixelType;
 938   typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
 939
 940   //Tipo de pixeles de salida 2
 941   typedef unsigned short OutputPixelType2;
 942   typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
 943
 944   //Definición del thresholder
 945   typedef itk::BinaryThresholdImageFilter<
 946                         InternalImageType,
 947                         OutputImageType    >    ThresholdingFilterType;
 948
 949   //Definición del primer filtro de conversión de pixeles
 950   typedef itk::CastImageFilter<
 951                OutputImageType, OutputImageType2 >  CastFilterType;
 952
 953   //Definición del segundo tipo de conversión de pixeles
 954   typedef itk::CastImageFilter<
 955                OutputImageType2, InternalImageType >  CastFilterType2;
 956
 957   //Tercer tipo de conversión
 958   typedef itk::RescaleIntensityImageFilter<
 959                                InternalImageType,
 960                                OutputImageType >   CastFilterType3;
 961
 962   //Cuarto tipo de conversión
 963   typedef itk::RescaleIntensityImageFilter<
 964                                OutputImageType,
 965                                OutputImageType >   CastFilterType4;
 966
 967   ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
 968
 969   thresholder->SetLowerThreshold( 0.0 );
 970   thresholder->SetUpperThreshold( 128 );
 971
 972   thresholder->SetOutsideValue(  255  );
 973   thresholder->SetInsideValue(  0 );
 974
 975   //Definción de conexiónes entre VTK e ITK y el writer
 976   typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
 977   typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
 978   typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
 979
 980   ConnectorType::Pointer connector= ConnectorType::New();
 981   ConnectorType2::Pointer connector2= ConnectorType2::New();
 982
 983
 984   CastFilterType::Pointer filter=CastFilterType::New();
 985   CastFilterType2::Pointer filter2=CastFilterType2::New();
 986
 987   connector->SetInput( imagedata );
 988   filter2->SetInput(connector->GetOutput());
 989
 990   typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
 991                                InternalImageType,
 992                                InternalImageType >  SmoothingFilterType;
 993
 994   SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
 995
 996   typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
 997                                InternalImageType,
 998                                InternalImageType >  GradientFilterType;
 999
1000   typedef   itk::SigmoidImageFilter<
1001                                InternalImageType,
1002                                InternalImageType >  SigmoidFilterType;
1003
1004   GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1005
1006   SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1007
1008   sigmoid->SetOutputMinimum(  0.0  );
1009   sigmoid->SetOutputMaximum(  255.0  );
1010
1011
1012   typedef  itk::FastMarchingImageFilter<
1013                               InternalImageType,
1014                               InternalImageType >    FastMarchingFilterType;
1015
1016
1017   FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1018
1019   typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1020                 InternalImageType >    GeodesicActiveContourFilterType;
1021   GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1022                                      GeodesicActiveContourFilterType::New();
1023
1024   typedef  itk::ZeroCrossingImageFilter<
1025                               InternalImageType,
1026                               InternalImageType >    ZeroCrossingFilterType;
1027 ZeroCrossingFilterType::Pointer zeroCrossing =
1028                                                                         ZeroCrossingFilterType::New();
1029
1030 const double propagationScaling = atof( prop );
1031
1032   geodesicActiveContour->SetPropagationScaling( propagationScaling );
1033   geodesicActiveContour->SetCurvatureScaling( 1.0 );
1034   geodesicActiveContour->SetAdvectionScaling( 1.0 );
1035
1036   geodesicActiveContour->SetMaximumRMSError( 0.02 );
1037   int it=atoi( iter );
1038   geodesicActiveContour->SetNumberOfIterations( it );
1039
1040   smoothing->SetInput( filter2->GetOutput() );
1041   gradientMagnitude->SetInput( smoothing->GetOutput() );
1042   sigmoid->SetInput( gradientMagnitude->GetOutput() );
1043   fastMarching->SetInput( sigmoid->GetOutput() );
1044   geodesicActiveContour->SetInput(  fastMarching->GetOutput() );
1045   geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1046
1047   zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1048   //thresholder->SetInput( zeroCrossing->GetOutput() );
1049   thresholder->SetInput( geodesicActiveContour->GetOutput() );
1050   connector2->SetInput( thresholder->GetOutput()  );
1051
1052
1053   smoothing->SetTimeStep( 0.125 );
1054   smoothing->SetNumberOfIterations(  5 );
1055   smoothing->SetConductanceParameter( 9.0 );
1056
1057
1058   const double sigma = atof( sigm );
1059   gradientMagnitude->SetSigma(  sigma  );
1060
1061   const double alpha =  atof( alf );
1062   const double beta  =  atof( bet );
1063
1064   sigmoid->SetAlpha( alpha );
1065   sigmoid->SetBeta(  beta  );
1066
1067   typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1068   typedef FastMarchingFilterType::NodeType       NodeType;
1069
1070   NodeContainer::Pointer seeds = NodeContainer::New();
1071
1072   InternalImageType::IndexType  seedPosition;
1073   seedPosition[0] = x;
1074   seedPosition[1] = y;
1075
1076   const double initialDistance = atof( distanc );
1077
1078   NodeType node;
1079
1080   const double seedValue = - initialDistance;
1081
1082   node.SetValue( seedValue );
1083   node.SetIndex( seedPosition );
1084
1085   seeds->Initialize();
1086   seeds->InsertElement( 0, node );
1087
1088   fastMarching->SetTrialPoints(  seeds  );
1089
1090   fastMarching->SetSpeedConstant( 1.0 );
1091
1092   fastMarching->SetOutputSize(
1093            connector->GetOutput()->GetBufferedRegion().GetSize() );
1094
1095   fastMarching->SetStoppingValue( 800 );
1096   try
1097     {
1098
1099         connector2->Update();
1100         vtkImageData *idata = connector2->GetOutput();
1101
1102         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1103
1104         cntVTK->SetInput( idata );
1105
1106         cntVTK->SetNumberOfContours( 1 );
1107         cntVTK->SetValue( 0, 255 );
1108         cntVTK->Update( );
1109         cntVTK->UpdateInformation();
1110
1111         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1112         cpd->SetInput( cntVTK->GetOutput( ) );
1113         cpd->Update( );
1114         cpd->UpdateInformation();
1115
1116         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1117         conn->SetExtractionModeToLargestRegion( );
1118         conn->SetInput( cpd->GetOutput( ) );
1119         conn->Update( );
1120         conn->UpdateInformation();
1121
1122         vtkStripper* vtkstripper = vtkStripper::New( );
1123         vtkstripper->SetInput( conn->GetOutput() );
1124         vtkstripper->Update();
1125         vtkstripper->UpdateInformation();
1126
1127
1128         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1129         std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1130         polyDataResult->Update( );
1131         polyDataResult->UpdateInformation();
1132
1133 //EED
1134         /*
1135 ofstream myfile;
1136 myfile.open ("C:/Creatis/example.txt");
1137 myfile << "\n";
1138 polyDataResult->Print(myfile);
1139 myfile << "-------------------------------------\n";
1140 polyDataResult->GetLines()->Print(myfile);
1141 myfile.close();*/
1142
1143         cntVTK          -> Delete();
1144         cpd                     -> Delete();
1145         conn            -> Delete();
1146
1147
1148 //--Calculating control points
1149
1150         std::vector<double> vecX;
1151         std::vector<double> vecY;
1152         std::vector<double> vecXo;
1153         std::vector<double> vecYo;
1154         std::vector<double>::iterator vecXoi;
1155         std::vector<double>::iterator vecYoi;
1156         std::vector<double> vecZ;
1157
1158         std::vector<double> vecCtrlPointX;
1159         std::vector<double> vecCtrlPointY;
1160         std::vector<double> vecCtrlPointZ;
1161
1162
1163         double *p;
1164         double xAct=0;
1165         double yAct=0;
1166         int ii,size=polyDataResult->GetNumberOfPoints();
1167 ofstream myfile;
1168 myfile.open ("C:/Creatis/example2.txt");
1169
1170         size=polyDataResult->GetNumberOfPoints();
1171         for (ii=0;ii<size;ii++)
1172         {
1173                 if(ii==0)
1174                 {
1175                         xAct=x;
1176                         yAct=y;
1177                 }
1178                 p       = polyDataResult->GetPoint(ii);
1179                 double x=p[0];
1180                 double y=p[1];
1181                 /*if(fabs(yAct-y)>20)
1182                 {
1183                         if((xAct-x)>1 || (xAct-x)<-1)
1184                         {
1185                         vecX.push_back( p[0] );
1186                         vecY.push_back( p[1] );
1187                         myfile <<p[0]<<","<<p[1]<<"\n";
1188                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1189                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1190                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1191                         vecZ.push_back( -900 );
1192                         xAct=x;
1193                         yAct=y;
1194                         }
1195                         else
1196                         {
1197                                 vecXo.push_back(p[0]);
1198                                 vecYo.push_back(p[1]);
1199                         }
1200
1201                 }
1202                 else*/ if(fabs(xAct-x)>11)
1203                 {
1204                         vecXo.push_back(p[0]);
1205                         vecYo.push_back(p[1]);
1206                 }
1207                 else
1208                 {
1209                 vecX.push_back( p[0] );
1210                 myfile <<p[0]<<","<<p[1]<<"\n";
1211                 std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1212                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1213                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1214                 vecY.push_back( p[1] );
1215                 vecZ.push_back( -900 );
1216                 xAct=x;
1217                 yAct=y;
1218                 }
1219
1220
1221         }
1222
1223         while(!vecXo.empty())
1224         {
1225                 vecX.push_back(vecXo.back());
1226                 std::cout<<" x Siguiente "<<vecXo.back();
1227                 vecXo.pop_back();
1228                 vecZ.push_back( -900 );
1229         }
1230         while(!vecYo.empty())
1231         {
1232                 vecY.push_back(vecYo.back());
1233                         vecYo.pop_back();
1234         }
1235         myfile.close();
1236
1237         /*for(int l=0;l<vecX.size();l++)
1238         {
1239                 if(l==0)
1240                 {
1241             vecXo.push_back(p[0]);
1242                         vecYo.push_back(p[1]);
1243                 }
1244                 else
1245                 {
1246                         if(vecXoi[l-1]==)
1247                         {
1248                         }
1249                 }
1250
1251         }*/
1252
1253         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1254
1255         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1256
1257 int method=2;
1258         if (method==0){
1259                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1260         }
1261         else if (method==1){
1262                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1263         }
1264         else if (method==2){
1265                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1266                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1267         }
1268         //--Adding contour to the system
1269
1270         std::vector<int> actualInstantVector;
1271         _instantPanel->getInstant( actualInstantVector );
1272         actualInstantVector[1]=z;
1273
1274         int j,sizeCtrPt = vecCtrlPointX.size();
1275
1276         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1277         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1278         if (sizeCtrPt>=3){
1279                 for (j=0 ; j<sizeCtrPt ; j++)
1280                 {
1281                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1282                 } // for
1283                 std::string theName;
1284                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1285                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1286                 bool addedModel = theName.compare("") != 0;
1287                 if( addedModel )
1288                 {
1289                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1290                         _theViewPanel->getSpacing(spc);
1291                         //Adding the manualContourControler to interface objects structure
1292                         //Adding the manualViewContour to interface objects structure
1293                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1294                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1295                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1296                 }       // if addedModel
1297         } // if sizeCtrPt
1298
1299
1300
1301                  WriterType::Pointer writer = WriterType::New();
1302          CastFilterType3::Pointer caster = CastFilterType3::New();
1303
1304                  caster->SetInput( gradientMagnitude->GetOutput() );
1305                  writer->SetInput( caster->GetOutput() );
1306                  writer->SetFileName("Gradient Magnitude.png");
1307                  caster->SetOutputMinimum(   0 );
1308                  caster->SetOutputMaximum( 255 );
1309                  writer->Update();
1310
1311                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1312                  WriterType::Pointer writer2 = WriterType::New();
1313
1314                  caster2->SetInput( sigmoid->GetOutput() );
1315                  writer2->SetInput( caster2->GetOutput() );
1316                  writer2->SetFileName("Sigmoid.png");
1317                  caster2->SetOutputMinimum(   0 );
1318                  caster2->SetOutputMaximum( 255 );
1319                  writer2->Update();
1320
1321                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1322                  WriterType::Pointer writer3 = WriterType::New();
1323
1324                  caster3->SetInput( fastMarching->GetOutput() );
1325                  writer3->SetInput( caster3->GetOutput() );
1326                  writer3->SetFileName("FastMarching.bmp");
1327                  caster3->SetOutputMinimum(   0 );
1328                  caster3->SetOutputMaximum( 255 );
1329                  writer3->Update();
1330
1331                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1332                  WriterType::Pointer writer4 = WriterType::New();
1333
1334                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1335                  writer4->SetInput( caster4->GetOutput() );
1336                  writer4->SetFileName("GeodesicActiveContour.png");
1337                  caster4->SetOutputMinimum(   0 );
1338                  caster4->SetOutputMaximum( 255 );
1339                  writer4->Update();
1340
1341                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1342                  WriterType::Pointer writer5 = WriterType::New();
1343
1344                  caster5->SetInput( zeroCrossing->GetOutput() );
1345                  writer5->SetInput( caster5->GetOutput() );
1346                  writer5->SetFileName("ZeroCrossing.bmp");
1347                  caster5->SetOutputMinimum(   0 );
1348                  caster5->SetOutputMaximum( 255 );
1349                  writer5->Update();
1350     }
1351   catch( itk::ExceptionObject & excep )
1352     {
1353     std::cerr << "Exception caught !" << std::endl;
1354     std::cerr << excep << std::endl;
1355     }
1356 }
1357
1358 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1359
1360         //JCP 20-10-08 Undo redo implementation
1361         saveState();
1362         //JCP 20-10-08 Undo redo implementation
1363
1364         wxBusyCursor wait;
1365         int                                     x                                       = _theViewPanel->GetX();
1366         int                                     y                                       = _theViewPanel->GetY();
1367         int                                     z                                       = _theViewPanel->GetZ();
1368         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1369         RefreshInterface();
1370 }
1371
1372
1373 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1374 {
1375         int typeofcontour = 1;
1376         //--Extracting Contour
1377         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1378         vtkImageData    *imagedata      = getImageData();
1379 //              double                  *range          = imagedata->GetScalarRange();
1380 //              double                  thr                     = 1;
1381
1382         vtkImageReslice *imageReslice = vtkImageReslice::New();
1383 //EED
1384 //              double spc[3];
1385 //              imagedata->GetSpacing(spc);
1386 //              x = x*spc[0];
1387 //              y = y*spc[1];
1388 //              z = z*spc[3];
1389
1390         imageReslice->SetInput( imagedata );
1391         imageReslice->SetInformationInput(imagedata);
1392         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1393         imageReslice->SetResliceAxesOrigin(0,0,z);
1394         imageReslice->SetOutputDimensionality(2);
1395         imageReslice->SetInterpolationModeToLinear();
1396
1397         imagedata = imageReslice->GetOutput();
1398         imagedata->Update();
1399         imagedata->UpdateInformation();
1400
1401         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1402         cntVTK->SetInput( imagedata );
1403
1404         cntVTK->SetNumberOfContours( 1 );
1405         //cntVTK->SetValue( 0, vmin );
1406 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1407         cntVTK->SetValue( 1, isovalue );
1408 //      cntVTK->SetValue( 1, vmax );
1409         cntVTK->Update( );
1410         cntVTK->UpdateInformation();
1411
1412         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1413         cpd->SetInput( cntVTK->GetOutput( ) );
1414         cpd->ConvertLinesToPointsOff( );
1415         cpd->Update( );
1416         cpd->UpdateInformation();
1417
1418         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1419         conn->SetExtractionModeToClosestPointRegion( );
1420         //conn->SetMaxRecursionDepth( 3000 );
1421
1422         conn->SetInput( cpd->GetOutput( ) );
1423
1424         conn->SetClosestPoint( x, y, 0 );
1425         conn->Update( );
1426         conn->UpdateInformation();
1427
1428         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1429         cpd2->SetInput( conn->GetOutput( ) );
1430         cpd2->Update();
1431         cpd2->UpdateInformation();
1432
1433         vtkStripper* vtkstripper = vtkStripper::New( );
1434         vtkstripper->SetInput( cpd2->GetOutput() );
1435         vtkstripper->Update();
1436         vtkstripper->UpdateInformation();
1437
1438
1439         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1440
1441         polyDataResult->Update( );
1442         polyDataResult->UpdateInformation();
1443
1444 /* EED
1445 ofstream myfile;
1446 myfile.open ("c:/temp/example.txt");
1447 myfile << "\n";
1448 polyDataResult->Print(myfile);
1449 myfile << "-------------------------------------\n";
1450 polyDataResult->GetLines()->Print(myfile);
1451 myfile.close();
1452 */
1453
1454         cntVTK          -> Delete();
1455         cpd2            -> Delete();
1456         cpd                     -> Delete();
1457         conn            -> Delete();
1458
1459
1460 //--Calculating control points
1461
1462         std::vector<double> vecX;
1463         std::vector<double> vecY;
1464         std::vector<double> vecZ;
1465
1466         std::vector<double> vecCtrlPointX;
1467         std::vector<double> vecCtrlPointY;
1468         std::vector<double> vecCtrlPointZ;
1469
1470
1471         double *p;
1472         int ii,size=polyDataResult->GetNumberOfPoints();
1473         int id;
1474         for (ii=1;ii<=size;ii++)
1475         {
1476                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1477                 p       = polyDataResult->GetPoint(id);
1478 //              double x=p[0];
1479 //              double y=p[1];
1480                 vecX.push_back( p[0] );
1481                 vecY.push_back( p[1] );
1482                 vecZ.push_back( -900 );
1483 //                      vecZ.push_back( p[2] );
1484         }
1485
1486
1487         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1488         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1489
1490 //PROOFS
1491         /*if (methodRadiobox->GetSelection()==0){
1492                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1493         }
1494         if (methodRadiobox->GetSelection()==1){
1495                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1496         }
1497         if (methodRadiobox->GetSelection()==2){
1498                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1499                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1500         }*/
1501
1502         if (method==0){
1503                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1504         }
1505         else if (method==1){
1506                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1507         }
1508         else if (method==2){
1509                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1510                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1511         }
1512
1513         //--Adding contour to the system
1514
1515         std::vector<int> actualInstantVector;
1516         _instantPanel->getInstant( actualInstantVector );
1517         actualInstantVector[1]=z;
1518
1519         int j,sizeCtrPt = vecCtrlPointX.size();
1520         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1521         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1522         if (sizeCtrPt>=3){
1523                 for (j=0 ; j<sizeCtrPt ; j++)
1524                 {
1525                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1526                 } // for
1527                 std::string theName;
1528                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1529                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1530                 bool addedModel = theName.compare("") != 0;
1531                 if( addedModel )
1532                 {
1533                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1534                         _theViewPanel->getSpacing(spc);
1535                         //Adding the manualContourControler to interface objects structure
1536                         //Adding the manualViewContour to interface objects structure
1537                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1538                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1539                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1540                 }       // if addedModel
1541         } // if sizeCtrPt
1542 }
1543 int wxContourMainFrame::GetImageDataSizeZ(){
1544         return _theViewPanel->GetImageDataSizeZ();
1545 }
1546
1547 void wxContourMainFrame::GetImageDataRange(double *range){
1548         _theViewPanel->GetImageDataRange(range);
1549 }
1550
1551 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
1552         //JCP 20-10-08 Undo redo implementation
1553         saveState();
1554         //JCP 20-10-08 Undo redo implementation
1555
1556         wxBusyCursor wait;
1557         int                                     x                                       = _theViewPanel->GetX();
1558         int                                     y                                       = _theViewPanel->GetY();
1559         int z;
1560         double porcent;
1561         wxString tmpString;
1562         double totalZ = maxZ-minZ+1;
1563         for( z=minZ ; z<=maxZ ; z++ )
1564         {
1565                 porcent = 100.0* (z-minZ)/totalZ;
1566                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
1567                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
1568                 //_staticTextSegmentation->SetLabel(tmpString);
1569                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
1570         }
1571         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
1572         RefreshInterface();
1573 }
1574
1575
1576 //Creates a reference line to be used as the axis of the mirroring
1577 void wxContourMainFrame::referenceLine()
1578 {
1579     wxBusyCursor wait;
1580         double spc[3];
1581
1582         vtkImageData *vtkimagedata = _theViewPanel->getImageData();
1583         vtkimagedata->GetSpacing(spc);
1584
1585         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1586
1587         _refLineControl = new manualLineControler();
1588         _refLineModel   = new manualContourModelLine();
1589         _refLineView = new manualViewLine();
1590         _refLineView->SetModel( _refLineModel );
1591         _refLineView->SetWxVtkBaseView( viewer2D );
1592         _refLineView->SetRange( 2 );
1593         _refLineView->SetZ( 1200 );
1594
1595         _refLineView->SetSpacing(spc);
1596
1597         _refLineView->SetColorNormalContour(0, 0, 1);
1598         _refLineView->SetColorEditContour(0, 0.5, 0.5);
1599         _refLineView->SetWidthLine(4);
1600
1601         _refLineControl->SetModelView( _refLineModel , _refLineView );
1602         viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
1603         _refLineModel->SetCloseContour(false);
1604         _refLineControl->CreateNewManualContour();
1605
1606         double z = _refLineControl->GetZ();
1607 /*
1608         _refLineControl->AddPoint(50,100,z);
1609         _refLineControl->AddPoint(80,40,z);
1610         _refLineControl->SetCompleteCreation(true);
1611
1612         _refLineModel->AddPoint(50,100,z);
1613         _refLineModel->AddPoint(80,40,z);
1614         _refLineModel->UpdateSpline();
1615
1616         _refLineView->UpdateViewPoint(0);
1617         _refLineView->UpdateViewPoint(1);
1618 */
1619
1620         _refLineControl->SetActive(true);
1621         _refLineView->RefreshContour();
1622 }
1623
1624 //Hides the referenceLine
1625 void wxContourMainFrame::refLineHide()
1626 {
1627         if (_refLineControl!=NULL)
1628         {
1629                 _refLineView->RemoveCompleteContourActor();
1630                 _refLineControl->SetEditable(false);
1631                 _refLineControl->SetActive(false);
1632         }
1633 }
1634
1635 //Shows the referenceLine
1636 void wxContourMainFrame::refLineShow()
1637 {
1638         if (_refLineControl!=NULL)
1639         {
1640                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1641
1642                 _refLineView->SetModel( _refLineModel );
1643                 _refLineView->SetWxVtkBaseView( viewer2D );
1644                 _refLineView->SetRange( 2 );
1645                 _refLineView->SetZ( 1200 );
1646
1647                 _refLineControl->SetModelView( _refLineModel , _refLineView );
1648                 viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
1649                 _refLineControl->CreateNewManualContour();
1650                 _refLineControl->SetActive(true);
1651                 _refLineView->RefreshContour();
1652         }
1653 }
1654
1655 void wxContourMainFrame::refLineChangeWidth(int width)
1656 {
1657         _refLineView->SetWidthLine(width);
1658         _refLineView->RefreshContour();
1659
1660         RefreshInterface();
1661 }
1662
1663
1664 void wxContourMainFrame::onMirror()
1665 {
1666         //AD:02-09
1667         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1668         std::vector<std::string> filterCurrentSelection;
1669
1670         std::vector<int> tempVector;
1671         _instantPanel->getInstant( tempVector );
1672     _performingOperation->reset();
1673         _performingOperation->setStartCommand( COPY );
1674         _performingOperation->setStartOperationInstantVector( tempVector );
1675         _performingOperation->setKeyNamesOperationElems( currentSelection );
1676
1677         char theStartCommand = _performingOperation->getStartCommand();
1678         if (  theStartCommand == COPY )
1679         {
1680                 //JCP 20-10-08 Undo redo implementation
1681                 saveState();
1682                 //JCP 20-10-08 Undo redo implementation
1683                 std::vector<int> tempVector;
1684                 _instantPanel->getInstant( tempVector );
1685                 _performingOperation->setEndOperationInstantVector ( tempVector );
1686                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
1687                 int i,size = elems.size();
1688                 for( i=0; i<size; i++ )
1689                 {
1690                         createMirrorContourOf( elems[i], tempVector, i>0 );
1691                 }
1692         }
1693
1694         //deleteContour( _refName );
1695         //_refName = "";
1696 }
1697
1698 void wxContourMainFrame::onThreshold(int minVal, int maxVal)
1699 {
1700
1701         vtkImageData * img = _theViewPanel->getImageData();
1702
1703         double range[2];
1704         img->GetScalarRange(range);
1705
1706         //vtkImageData * fakeImage = new vtkImageData();
1707
1708         //Lookup Table
1709         vtkLookupTable *lookup = vtkLookupTable::New();
1710         lookup->SetNumberOfTableValues(range[1]+1);
1711         lookup->SetTableRange(range);
1712         lookup->SetAlphaRange(0, 1);
1713         lookup->SetValueRange(0, 1);
1714         lookup->SetSaturationRange(0, 0);
1715         lookup->SetRampToLinear( );
1716
1717
1718
1719         //Assign a fake color for the upper image, and set the white as transparent
1720         for(int i = range[0]; i < range[1]; i++)
1721         {
1722                 if( i >= minVal && i <= maxVal )
1723                 {
1724                         lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
1725                 }
1726                 else if( i >= range[0] && i < minVal )
1727                 {
1728                         lookup->SetTableValue(i, 0.0, 0.0, 0.0, 0); //transparent
1729                 }
1730                 else if( i > maxVal && i < range[1] )
1731                 {
1732                         lookup->SetTableValue(i, 0.0, 0.0, 0.0, 0); //transparent
1733                 }
1734         }
1735
1736                 lookup->Build( );
1737
1738                 vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
1739                 mapperImage->SetLookupTable( lookup );
1740                 mapperImage->SetInput( img );
1741                 //mapperImage->SetOutputFormatToRGBA( );
1742
1743                 vtkImageActor * upperImageActor = vtkImageActor::New( );
1744                 upperImageActor->SetInput( mapperImage->GetOutput() );
1745                 upperImageActor->SetOpacity( 1 );
1746
1747                 vtkImageViewer2* viewer = vtkImageViewer2::New();
1748                 viewer->SetInput( upperImageActor->GetInput() );
1749                 viewer->SetColorLevel((range[1]-range[0])/2);
1750                 viewer->SetColorWindow(range[1]);
1751                 viewer->GetRenderer()->AddActor( upperImageActor );
1752                 viewer->Render();
1753
1754                 RefreshInterface();
1755 }
1756
1757
1758 void wxContourMainFrame::showAxis(bool show)
1759 {
1760         _theViewPanel->SetVisibleAxis(show);
1761         _theViewPanel->Refresh();
1762 }
1763
1764
1765 void wxContourMainFrame::onRigidPressed(){
1766         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1767         int elementsSelected = currentSelection.size();
1768
1769         if ( elementsSelected >= 1 ){
1770                 //JCP 20-10-08 Undo redo implementation
1771                 saveState();
1772                 //JCP 20-10-08 Undo redo implementation
1773
1774                 std::vector<int> tempVector;
1775                 _instantPanel->getInstant( tempVector );
1776                 Instant instant(&tempVector);
1777
1778                 int i , size=currentSelection.size();
1779                 for ( i=0 ; i<size ; i++ )
1780                 {
1781                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
1782                 } // i
1783         }
1784 }
1785
1786 void wxContourMainFrame::onWidthOfContour(double width){
1787
1788         _theViewPanel->removeSceneContours();
1789         _theViewPanel->SetWidthContour(width);
1790
1791         //_theViewPanel->getSceneManager()->SetWidthContour( width );
1792
1793         RefreshInterface();
1794 }
1795 int wxContourMainFrame::getColorWindow(){
1796         return _theViewPanel->getColorWindow();
1797 }
1798 int wxContourMainFrame::getWindowLevel(){
1799         return _theViewPanel->getWindowLevel();
1800 }
1801
1802 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
1803         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
1804
1805
1806         RefreshInterface();
1807 }
1808
1809 void wxContourMainFrame::onInterpolation(bool interpolate){
1810         _theViewPanel->onInterpolation(interpolate);
1811         RefreshInterface();
1812 }
1813
1814 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
1815         _instantPanel->setConceptValue( name, actual );
1816 }
1817
1818 void wxContourMainFrame::resetAppend(){
1819         kernelManager->resetAppend();
1820
1821 }
1822
1823 void wxContourMainFrame::onSpreadAdd(){
1824         std::vector<double> vecX;
1825         std::vector<double> vecY;
1826         std::vector<double> vecZ;
1827         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
1828
1829         std::vector<int> tempVector;
1830         _instantPanel->getInstant( tempVector );
1831
1832         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
1833
1834         interfMainPanel::getInstance()->appendStringSpread(val);
1835
1836 }
1837
1838 void wxContourMainFrame::onSpreadGo(int type){
1839
1840         //JCP 20-10-08 Undo redo implementation
1841         saveState();
1842         //JCP 20-10-08 Undo redo implementation
1843
1844         wxBusyCursor wait;
1845         std::vector<double> vecCtrlPointX;
1846         std::vector<double> vecCtrlPointY;
1847         std::vector<double> vecCtrlPointZ;
1848         double  minZ,maxZ;
1849         int z;
1850
1851         std::vector<int> tempVector;
1852         _instantPanel->getInstant( tempVector );
1853 //              tempVector[1];
1854
1855         kernelManager->getMaxMinZ(&minZ,&maxZ);
1856 //JSTG_16-07-08_----------------------------------------------------------------
1857         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
1858         kernelManager->CalculeSplinePropagation();
1859
1860         double          totalZ = maxZ-minZ+1;
1861         double          porcent;
1862         wxString        tmpString;
1863 //--------------------------------------------------------------------
1864         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
1865         {
1866                 porcent = 100.0* (z-minZ)/totalZ;
1867                 int numero = (int)(z-minZ+1)/(int)totalZ;
1868                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
1869
1870                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
1871
1872                 int typeofcontour = 1;
1873                 std::string theName;
1874                 manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
1875
1876                 if( manModelContour!=NULL ){
1877                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1878                         this->_theViewPanel->getSpacing(spc);
1879                         //Adding the manualContourControler to interface objects structure
1880                         //Adding the manualViewContour to interface objects structure
1881                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1882                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
1883                 } // if addedModel
1884         }
1885         if(z > maxZ){
1886                 porcent = 100.0;
1887                 int numero = (int)(z-minZ+1)/(int)totalZ;
1888                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
1889
1890                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
1891         }// for z
1892         //RefreshInterface();
1893 }
1894
1895 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
1896
1897 }
1898
1899 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
1900         std::vector<int> tempVector;
1901         _instantPanel->getInstant(tempVector);
1902         //Asignation of slide number should be different ex by name
1903         tempVector[1]=slide;
1904         return kernelManager->getOutlinesNameAtInstant(tempVector);
1905 }
1906
1907 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ){
1908         int maxContourGroup     =       0;
1909
1910         ContourExtractData      *contourextractdata = new ContourExtractData();
1911
1912         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
1913
1914         std::vector<manualContourModel*> lstManConMod;
1915         std::vector<manualContourModel*> lstManConModTmp;
1916         std::vector<manualContourModel*> lstManConModExp;
1917         std::vector<double> pLstValue;
1918         std::vector<double> pLstValuePosX;
1919         std::vector<double> pLstValuePosY;
1920         std::vector<double> pLstValuePosZ;
1921
1922         int             resultSize;
1923         int             resultGrayRangeCount;
1924         double  resultMin;
1925         double  resultMax;
1926         double  resultAverage;
1927         double  resultStandardeviation;
1928
1929         std::vector<int> tempVector;
1930         _instantPanel->getInstant( tempVector );
1931
1932         vtkImageData *imagedata = _theViewPanel->getImageData();
1933         int sizeZ = _theViewPanel->GetImageDataSizeZ();
1934         int z;
1935         int ii,sizeLstContourThings;
1936
1937
1938         int minZ,maxZ;
1939         double totalZ;
1940         double porcent;
1941         wxString tmpString;
1942
1943
1944
1945         if (selection==0 ) // actual slice
1946         {
1947                 std::vector<int> tempVector;
1948                 _instantPanel->getInstant( tempVector );
1949                 int actualSlice = tempVector[1];
1950                 minZ    = actualSlice;
1951                 maxZ    = actualSlice;
1952         }
1953         else if (selection==2 ) // All slices
1954         {
1955                 minZ    = 0;
1956                 maxZ    = sizeZ-1;
1957         }
1958         else if (selection==1 ) // slice range
1959         {
1960                 minZ    = minimumZ;
1961                 maxZ    = maximumZ;
1962         }
1963
1964
1965         totalZ  = maxZ-minZ+1;
1966         contourextractdata->SetImage( imagedata);
1967
1968 // For each slice..
1969         for ( z=minZ ; z<=maxZ ; z++ )
1970         {
1971
1972                 porcent = 100.0* (z-minZ)/totalZ;
1973                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
1974
1975                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
1976                 //_staticTextInformation->SetLabel(tmpString);
1977
1978                 //Extraction data from contours of each slice
1979                 contourextractdata->SetZtoBeAnalys( z);
1980
1981                 tempVector[1]=z;
1982                 Instant instant(&tempVector);
1983                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
1984                 sizeLstContourThings = lstContourThings.size();
1985
1986                 lstManConMod.clear();
1987                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
1988                 {
1989                         ContourThing **contourthing = lstContourThings[ii];
1990                         lstManConMod.push_back( (*contourthing)->getModel() );
1991                 }
1992                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
1993
1994
1995                 wxString tempString;
1996                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
1997                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
1998                 //_grid->SetRowLabelValue(z, tempString );
1999 //EED004
2000                 int iContourGroup,sizeContourGroup;
2001                 if (typeContourGroup==3) // contour separete
2002                 {
2003                         sizeContourGroup=lstManConModExp.size();
2004                         if ( maxContourGroup<sizeContourGroup )
2005                         {
2006                                 maxContourGroup=sizeContourGroup;
2007                         }
2008                 } else {  // contour AND OR XOR
2009                         sizeContourGroup=1;
2010                         maxContourGroup=1;
2011                 }
2012
2013                 int tmpIntA;
2014
2015
2016
2017                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2018                         lstManConModTmp.clear();
2019                         if (typeContourGroup==3) // contour separete
2020                         {
2021                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2022                         } else {  // contour AND OR XOR
2023                                 lstManConModTmp = lstManConModExp;
2024                         }
2025
2026                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2027
2028                         pLstValue.clear();
2029                         pLstValuePosX.clear();
2030                         pLstValuePosY.clear();
2031                         pLstValuePosZ.clear();
2032                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2033                                                                                                                 &pLstValuePosX,
2034                                                                                                                 &pLstValuePosY,
2035                                                                                                                 &pLstValuePosZ);
2036                         // Statistics of each slice.
2037                         contourextractdata->Statistics( &pLstValue,
2038                                                                                         minimumZ,
2039                                                                                         maximumZ,
2040                                                                                         &resultGrayRangeCount,
2041                                                                                         &resultSize,
2042                                                                                         &resultMin,
2043                                                                                         &resultMax,
2044                                                                                         &resultAverage,
2045                                                                                         &resultStandardeviation);
2046
2047                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2048                         {
2049                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2050                         }
2051
2052                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2053
2054                         tempString.Printf(_T("%d"),resultSize);
2055                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2056
2057                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2058                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2059
2060                         tempString.Printf(_T("%f"),resultMin);
2061                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2062
2063                         tempString.Printf(_T("%f"),resultMax);
2064                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2065
2066                         tempString.Printf(_T("%f"),resultAverage);
2067                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2068
2069                         tempString.Printf(_T("%f"),resultStandardeviation);
2070                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2071
2072
2073                 } // for iContourGroup
2074         } // for z
2075
2076         int iTitleGroup;
2077         wxString tmpTitleString;
2078         int tmpIntB;
2079         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2080         {
2081                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2082                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2083                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2084
2085                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2086                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2087                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2088                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2089                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2090                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2091                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2092         }
2093
2094         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2095         delete contourextractdata;
2096 }
2097
2098 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){
2099     SaveValuesXYZ( directory , namefile, typeContourGroup );
2100
2101         vtkImageData* mask, *value;
2102         this->getMaskValue(mask, value, typeContourGroup);
2103         this->SaveImageResult( directory , namefile, mask, value);
2104
2105
2106         FILE *pFile=fopen(filename.c_str(),"w+");
2107
2108         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2109
2110         wxString tmpString;
2111         int i,j,maxX,maxY=sizeZ;
2112         maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2113
2114         int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2115         for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2116         {
2117                 //              fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2118                 fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2119         }
2120         fprintf(pFile,"\n" );
2121
2122
2123
2124         for ( j=0; j<maxY ; j++)
2125         {
2126                 fprintf(pFile,"%d\t" , j );
2127                 for (i=0 ; i<maxX ; i++){
2128                         tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2129                         fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2130                 } // for i
2131                 fprintf(pFile,"\n"  );
2132         } // for j
2133
2134         fclose(pFile);
2135 }
2136
2137 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2138 {
2139         wxBusyCursor wait;
2140         ContourExtractData      *contourextractdata = new ContourExtractData();
2141         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2142         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2143
2144         std::vector<manualContourModel*> lstManConMod;
2145         std::vector<manualContourModel*> lstManConModTmp;
2146         std::vector<manualContourModel*> lstManConModExp;
2147         std::vector<double> pLstValue;
2148         std::vector<double> pLstValuePosX;
2149         std::vector<double> pLstValuePosY;
2150         std::vector<double> pLstValuePosZ;
2151
2152         std::vector<int> tempVector;
2153         _instantPanel->getInstant( tempVector );
2154
2155         vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2156         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2157         int z;
2158         int ii,sizeLstContourThings;
2159
2160
2161         int minZ,maxZ;
2162         double totalZ;
2163         double porcent;
2164         wxString tmpString;
2165         minZ    = 0;// _mbarrange->GetStart();
2166         maxZ    = sizeZ;//_mbarrange->GetEnd();
2167         totalZ  = maxZ-minZ+1;
2168
2169         contourextractdata->SetImage( imagedata);
2170
2171 // For each slice..
2172         for ( z=0 ; z<sizeZ ; z++)
2173         {
2174
2175                 porcent = 100.0* (z-minZ)/totalZ;
2176
2177                 tmpString.Printf(_T("Saving Values"));
2178                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2179                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2180                 //_staticTextInformation->SetLabel(tmpString);
2181
2182
2183                 //Extraction data from contours of each slice
2184                 contourextractdata->SetZtoBeAnalys( z);
2185
2186                 tempVector[1]=z;
2187                 Instant instant(&tempVector);
2188                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2189                 sizeLstContourThings = lstContourThings.size();
2190
2191                 lstManConMod.clear();
2192                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2193                 {
2194                         ContourThing **contourthing = lstContourThings[ii];
2195                         lstManConMod.push_back( (*contourthing)->getModel() );
2196                 }
2197                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2198
2199
2200 //EED004
2201
2202                 int iContourGroup,sizeContourGroup;
2203                 if (typeContourGroup==3) // contour separete
2204                 {
2205                         sizeContourGroup=lstManConModExp.size();
2206                 } else {  // contour AND OR XOR
2207                         sizeContourGroup=1;
2208                 }
2209
2210                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2211                         lstManConModTmp.clear();
2212                         if (typeContourGroup==3) // contour separete
2213                         {
2214                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2215                         } else {  // contour AND OR XOR
2216                                 lstManConModTmp = lstManConModExp;
2217                         }
2218
2219                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2220
2221                         pLstValue.clear();
2222                         pLstValuePosX.clear();
2223                         pLstValuePosY.clear();
2224                         pLstValuePosZ.clear();
2225                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2226                                                                                                                 &pLstValuePosX,
2227                                                                                                                 &pLstValuePosY,
2228                                                                                                                 &pLstValuePosZ);
2229
2230                         std::string temp = directory + "/" + namefile + "-slice";
2231                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2232                         temp = temp + ".txt";
2233
2234                         // LG 14/01/09 : using crea
2235                         wxString filename = crea::std2wx(temp);
2236                         /*filename.Printf(_T("%s"),directory.c_str());
2237                         filename.append(_T("\\"));
2238                         filename.append(_T("%s"),namefile.c_str());
2239                         filename.append(_T("-slice"));
2240                         filename.append(_T("%d"),z);
2241                         filename.append(_T("-cont"));
2242                         filename.append(_T("%d"),iContourGroup);
2243                         filename.append(_T(".txt"));*/
2244                         //                      filename.Printf(temp.c_str());
2245
2246
2247
2248                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2249                         fprintf(pFile,"value \t x \t y \t z\n"  );
2250                         int iLstValue,sizeLstValue=pLstValue.size();
2251                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2252                         {
2253                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2254                         }
2255                         fclose(pFile);
2256                 } // for  iContourGroup
2257         } // for z
2258         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2259         //_staticTextInformation->SetLabel( _T("") );
2260         delete contourextractdata;
2261 }
2262
2263 void wxContourMainFrame::getMaskValue(vtkImageData* mask,vtkImageData* value,int typeContourGroup){
2264         wxBusyCursor wait;
2265         ContourExtractData      *contourextractdata = new ContourExtractData( true );
2266         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2267         if (typeContourGroup==3)
2268         {
2269                 typeContourGroup=1;
2270         }
2271         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2272
2273         std::vector<manualContourModel*> lstManConMod;
2274         std::vector<manualContourModel*> lstManConModTmp;
2275         std::vector<manualContourModel*> lstManConModExp;
2276
2277         std::vector<int> tempVector;
2278         _instantPanel->getInstant( tempVector );
2279
2280         vtkImageData *imagedata = _theViewPanel->getImageData();
2281         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2282         int z;
2283         int ii,sizeLstContourThings;
2284
2285
2286         int minZ,maxZ;
2287         double totalZ;
2288         double porcent;
2289
2290         wxString tmpString;
2291
2292         minZ    = 0;// _mbarrange->GetStart();
2293         maxZ    = sizeZ;//_mbarrange->GetEnd();
2294         totalZ  = maxZ-minZ+1;
2295
2296         contourextractdata->SetImage( imagedata);
2297
2298 // For each slice..
2299         for ( z=0 ; z<sizeZ ; z++)
2300         {
2301
2302                 porcent = 100.0* (z-minZ)/totalZ;
2303                 tmpString.Printf(_T("Saving Values"));
2304                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2305                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2306
2307                 //Extraction data from contours of each slice
2308                 contourextractdata->SetZtoBeAnalys( z);
2309
2310                 tempVector[1]=z;
2311                 Instant instant(&tempVector);
2312                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2313                 sizeLstContourThings = lstContourThings.size();
2314
2315                 lstManConMod.clear();
2316                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2317                 {
2318                         ContourThing **contourthing = lstContourThings[ii];
2319                         lstManConMod.push_back( (*contourthing)->getModel() );
2320                 }
2321                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2322
2323
2324                 int iContourGroup,sizeContourGroup;
2325                 if (typeContourGroup==3) // contour separete
2326                 {
2327                         sizeContourGroup=lstManConModExp.size();
2328                 } else {  // contour AND OR XOR
2329                         sizeContourGroup=1;
2330                 }
2331
2332                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2333                         lstManConModTmp.clear();
2334                         if (typeContourGroup==3) // contour separete
2335                         {
2336                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2337                         } else {  // contour AND OR XOR
2338                                 lstManConModTmp = lstManConModExp;
2339                         }
2340
2341                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2342                         contourextractdata->CalculateImageResult(); // with actual Z
2343
2344                 } // for  iContourGroup
2345         } // for z
2346
2347         value = contourextractdata->GetVtkImageValueResult();
2348         mask = contourextractdata->GetVtkImageMaskResult();
2349         delete contourextractdata;
2350 }
2351
2352 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2353 {
2354
2355         std::string temp = directory + "/" + namefile + "-Value.mhd";
2356
2357         wxString filename = crea::std2wx(temp);
2358         // LG
2359         //      filename.Printf(_T(temp.c_str()));
2360         //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2361         /*filename.Printf(_T("%s"),directory.c_str());
2362         filename.append(_T("\\"));
2363         filename.append(_T("%s"),namefile.c_str());
2364         filename.append(_T("-Value.mhd"));*/
2365
2366 // Image Value
2367         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2368         writerValueImage->SetInput( value );
2369         writerValueImage->SetFileName( (const char *)filename.mb_str() );
2370         writerValueImage->SetFileDimensionality( 3 );
2371         writerValueImage->Write( );
2372
2373 // Image Mask
2374         //              filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2375         temp = directory + "/" + namefile + "-Mask.mhd";
2376
2377         // LG 14/01/09 : using crea
2378         filename = crea::std2wx(temp);
2379         //      filename.Printf(_T(temp.c_str()));
2380
2381         /*filename.Printf(_T("%s"),directory.c_str());
2382         filename.append(_T("\\"));
2383         filename.append(_T("%s"),namefile.c_str());
2384         filename.append(_T("-Mask.mhd"));*/
2385
2386         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2387         writerMaskImage->SetInput( mask );
2388         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2389         writerMaskImage->SetFileDimensionality( 3 );
2390         writerMaskImage->Write( );
2391
2392         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2393
2394 }
2395
2396
2397
2398 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2399         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2400                 _theViewPanel->setActualVertical( value);
2401         }
2402         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
2403                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2404         }
2405
2406         changeInstant();
2407 }
2408
2409 void wxContourMainFrame::onSnakePressed(){
2410         std::vector<double> vecX;
2411         std::vector<double> vecY;
2412         std::vector<double> vecZ;
2413         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2414
2415         if (vecX.size()!=0){
2416                 std::vector<int> tempVector;
2417                 _instantPanel->getInstant( tempVector );
2418                 int i,size=vecZ.size();
2419                 int actualSlice = tempVector[1];
2420                 for ( i=0 ; i<size ; i++ )
2421                 {
2422                         vecZ[i] = actualSlice;
2423                 } // for
2424
2425                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2426                 wxPanel* panel = new wxPanel(dialog,-1);
2427                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2428          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2429                 dialog->ShowModal();
2430         } // if
2431
2432 }
2433
2434 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2435         std::string filename = kernelManager->getCurrentFileName();
2436         if(filename.compare("")!=0){
2437                 saveFileWithContours(filename);
2438         }else{
2439                 onSave();
2440         }
2441 }