lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.cxx

   1 //----------------------------------------------------------------------------------------------------------------
   2 // Class definition include
   3 //----------------------------------------------------------------------------------------------------------------
   4 #include "wxContourMainFrame.h"
   5
   6
   7
   8 //----------------------------------------------------------------------------------------------------------------
   9 // Includes
  10 //----------------------------------------------------------------------------------------------------------------
  11
  12
  13 #include "NameWrapper.h"
  14 #include "wx/artprov.h"
  15 #include "ConceptDataWrap.h"
  16
  17 #include <manualContour.h>
  18 //#include "ImageSourceThing.h"
  19 //#include "wxContour_ActionCommandsID.h"
  20 //#include "OutlineModelBuilder.h"
  21 //#include "wxContourEventHandler.h"
  22 #include <creaWx.h>
  23
  24 //----------------------------------------------------------------------------------------------------------------
  25 // Class implementation
  26 //----------------------------------------------------------------------------------------------------------------
  27 /** @file wxContourMainFrame.cxx */
  28
  29         //------------------------------------------------------------------------------------------------------------
  30         // Constructors & Destructors
  31         //------------------------------------------------------------------------------------------------------------
  32
  33 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
  34 char wxContourMainFrame::COPY = 'C';
  35
  36         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
  37                 //: wxPanel(parent, id, title, pos, size, style)
  38                 //: wxWindow(parent, id, pos, size, style)
  39                 : wxPanel(parent, id, pos, size, style)
  40         {
  41                 m_mgr.SetManagedWindow(this);
  42                 _creatingContoursActive         = false;
  43                 _theViewPanel                           = NULL;
  44 //              _modelManager                           = NULL;
  45                 _instantPanel                           = NULL;
  46 //              _buttonsBar                                     = NULL;
  47 //              _gridPanel                                      = NULL;
  48 //              _drawToolsPanel                         = NULL;
  49 //              _operationsToolsPanel           = NULL;
  50                 //_autoFormsPanel                               = NULL;
  51 //              _standardToolsPanel                     = NULL;
  52 //              _editionToolsPanel                      = NULL;
  53 //              _listViewPanel                          = NULL;
  54 //              _sceneManager                           = NULL;
  55                 //_actualInstant                                = NULL;
  56                 _numberOfVariablesStatistics = 6+1;
  57
  58                 _refLineControl                         = NULL;
  59                 _refLineModel                           = NULL;
  60                 _refLineView                            = NULL;
  61                 _thresholdActor                         = NULL;
  62                 _actorPresent                           = false;
  63
  64                 // set up default notebook style
  65 //              m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  66 //              m_notebook_theme = 0;
  67                 //wxContour_ActionCommandsID a;
  68
  69         }
  70
  71         wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
  72                 : wxPanel(parent, id, pos, size, style)
  73         {
  74                 m_mgr.SetManagedWindow(this);
  75                 _creatingContoursActive         = false;
  76                 _theViewPanel                           = NULL;
  77
  78                 _instantPanel                           = NULL;
  79                 _refLineControl                         = NULL;
  80                 _refLineModel                           = NULL;
  81                 _refLineView                            = NULL;
  82                 _thresholdActor                         = NULL;
  83                 _actorPresent                           = false;
  84
  85                 // set up default notebook style
  86                 m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
  87                 m_notebook_theme = 0;
  88                 //wxContour_ActionCommandsID a;
  89                 _numberOfVariablesStatistics = 7;
  90
  91                 _datadir = datadir;
  92
  93
  94                 inredo = 0;
  95                 inundo = 0;
  96
  97                 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
  98                 _performingOperation = new PerformingOperation();
  99
 100                 if(images.size() > 0)
 101                 {
 102                         this->setVectImages(images);
 103                 }
 104
 105 }
 106
 107 void wxContourMainFrame::setVectImages( std::vector<vtkImageData*> images ){
 108
 109         #if defined(__GNUC__)
 110                 std::string str_home(getenv("HOME"));
 111         #elif defined(_WIN32)
 112                         std::string str_home(getenv("USERPROFILE"));
 113         #endif
 114                 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
 115
 116         std::vector<std::string> conceptNameVect;
 117         std::vector<int> conceptSizeVect;
 118
 119         notebook = this->createNotebook();
 120
 121
 122         kernelManager = new KernelManagerContour( images , _datadir+"/data/" , strCreaContourDataTmp );
 123
 124
 125         _instantPanel                           = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
 126         _theViewPanel                           = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
 127
 128 //-------------------------------------------------------------
 129         kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
 130         _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
 131
 132
 133         double val = _theViewPanel->getCurrentDeep();
 134         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 135         //JCP _instantPanel->setConceptValue("time", num de imagenes);
 136         ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
 137         //*******************changeInstant();
 138         _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(),  data->getMaxShowedValue(), data->getActualValue() );
 139
 140         this->configurePanels( );
 141
 142 }
 143
 144
 145         wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir ){
 146                 if(instance == NULL){
 147                         instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
 148                 }
 149                 return instance;
 150         }
 151
 152         std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
 153         {
 154                 return kernelManager->getVectImages();
 155         }
 156
 157         wxContourMainFrame* wxContourMainFrame :: getInstance()
 158         {
 159                 return instance;
 160         }
 161
 162         void wxContourMainFrame :: resetInstance()
 163         {
 164                 delete instance;
 165                 instance = NULL;
 166         }
 167
 168         wxContourMainFrame :: ~wxContourMainFrame()
 169         {
 170
 171                 _pannew->Close();
 172                 interfMainPanel::resetInstance();
 173                 //_pannew->Destroy();
 174                 //delete _pannew;
 175
 176                 m_mgr.UnInit();
 177                 //delete m_mgr;
 178
 179                 //El problema al cerrar la aplicacion puede estar asociado
 180                 //a que  wxAUINotebook esta en la aplicacion
 181                 //principal (wxContourGUIExample)tambien
 182                 //EED????               delete _theViewPanel;
 183                 //EED????               delete _instantPanel;
 184                 //EED????               delete _buttonsBar;
 185                 //EED????               delete _actualInstant;
 186                 //EED????               delete _sceneManager;
 187         }
 188
 189
 190         //------------------------------------------------------------------------------------------------------------
 191         // Creational and initialization methods using WxAui
 192         //------------------------------------------------------------------------------------------------------------
 193         //
 194         wxAuiNotebook * wxContourMainFrame :: createNotebook()
 195         {
 196                 wxSize client_size = GetClientSize();
 197                 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
 198                 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
 199                 return noteBook;
 200         }
 201
 202
 203         //------------------------------------------------------------------------------------------------------------
 204         // Creational and initialization methods
 205         //------------------------------------------------------------------------------------------------------------
 206         bool wxContourMainFrame :: configurePanels( )
 207         {
 208                 bool configured = _theViewPanel!=NULL;
 209
 210                 configured &= _theViewPanel!=NULL;
 211                 if( _theViewPanel!=NULL )
 212                 {
 213                         notebook->AddPage( _theViewPanel, wxT("       View       ") );
 214                         m_mgr.Update();
 215                 }
 216
 217
 218                 if( configured )
 219                 {
 220                         notebook->AddPage( _instantPanel, wxT("Instant Page") );
 221                         m_mgr.Update();
 222                 }
 223
 224                 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
 225                 m_mgr.Update();
 226
 227                 SetMinSize(wxSize(300,300));
 228                 m_mgr.Update();
 229                 return configured;
 230         }
 231
 232
 233         bool wxContourMainFrame::addNewPanel(wxPanel* panel)
 234                 {
 235                 bool configured = panel!=NULL;
 236                 configured &= panel!=NULL;
 237
 238                 if( configured )
 239                 {
 240                         notebook->AddPage( panel, wxT("       Viewer       "), true );
 241                         m_mgr.Update();
 242                 }
 243                 return configured;
 244         }
 245
 246         //------------------------------------------------------------------------------------------------------------
 247         //  Attributes getters and setters
 248         //------------------------------------------------------------------------------------------------------------
 249
 250
 251
 252         void wxContourMainFrame :: setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel )
 253         {
 254                 _instantPanel = theInstantChooserPanel;
 255         }
 256
 257 //      void wxContourMainFrame :: setButtonsBar(  wxContour_ButtonsBar * theButtonsBar )
 258 //      {
 259 //              _buttonsBar = theButtonsBar;
 260 //      }
 261
 262 //      void wxContourMainFrame :: setGrid(  wxContour_Grid * theGridPanel )
 263 //      {
 264 //              _gridPanel = theGridPanel;
 265 //      }
 266
 267 //      void wxContourMainFrame :: setDrawToolsPanel(  wxContour_DrawToolsPanel * theDrawToolsPanel )
 268 //      {
 269 //              _drawToolsPanel = theDrawToolsPanel;
 270 //      }
 271
 272 //      void wxContourMainFrame :: setOperationsToolsPanel(  wxContour_OperationsToolsPanel * theOperationsToolsPanel )
 273 //      {
 274 //              _operationsToolsPanel = theOperationsToolsPanel;
 275 //      }
 276
 277 //      void wxContourMainFrame :: setAutomaticFormsPanel(  wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
 278 //      {
 279 //              _autoFormsPanel = theAutoFormsPanel;
 280 //      }
 281
 282 //      void wxContourMainFrame :: setStandardToolsPanel(  wxContour_StandardToolsPanel * theStandardToolsPanel )
 283 //      {
 284 //              _standardToolsPanel= theStandardToolsPanel;
 285 //      }
 286
 287 //      void wxContourMainFrame :: setEditionToolsPanel(  wxContour_EdtionToolsPanel * theEditionToolsPanel )
 288 //      {
 289 //              _editionToolsPanel =  theEditionToolsPanel;
 290 //      }
 291
 292 //      void wxContourMainFrame :: setListViewPanel(  wxContour_ListViewPanel * theListViewPanel )
 293 //      {
 294 //              _listViewPanel = theListViewPanel;
 295 //      }
 296
 297
 298
 299 void wxContourMainFrame::onCreateContourSpline( ){
 300
 301         //JCP 20-10-08 Undo redo implementation
 302         saveState();
 303         //JCP 20-10-08 Undo redo implementation
 304         createContour( 1 );
 305
 306 }
 307 void wxContourMainFrame::onCreateContourRectangle( ){
 308     //JCP 20-10-08 Undo redo implementation
 309         saveState();
 310         //JCP 20-10-08 Undo redo implementation
 311         createContour( 2 );
 312 }
 313 void wxContourMainFrame::onCreateContourCircle( ){
 314     //JCP 20-10-08 Undo redo implementation
 315         saveState();
 316         //JCP 20-10-08 Undo redo implementation
 317         createContour( 3 );
 318 }
 319
 320 void wxContourMainFrame::onCreateContourLine( ){
 321     //JCP 20-10-08 Undo redo implementation
 322         saveState();
 323         //JCP 20-10-08 Undo redo implementation
 324         createContour( 6 );
 325 }
 326
 327 //------------------------------------------------------------------------------------------------------------
 328
 329 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
 330 {
 331         //Creating the manualContourModel and including in the model
 332         manualContourModel * manModelContour = factoryManualContourModel(panel );
 333
 334         std::vector<int> instantVector;
 335         _instantPanel->getInstant( instantVector );
 336         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 337
 338         /*std::vector<int> instantVector;
 339         _instantPanel->getInstant( instantVector );
 340         std::string theName;
 341         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 342         bool addedModel = theName.compare("") != 0;//??
 343
 344         if( addedModel )
 345         {
 346                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 347                 _theViewPanel->getSpacing(spc);
 348                 //Adding the manualContourControler to interface objects structure
 349                 //Adding the manualViewContour to interface objects structure
 350                 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 351                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
 352         }
 353 }
 354 void wxContourMainFrame :: createContour( int typeContour )
 355 {
 356         //Creating the manualContourModel and including in the model
 357         manualContourModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
 358
 359
 360         std::vector<int> instantVector;
 361         _instantPanel->getInstant( instantVector );
 362         std::string theName = kernelManager->createOutline(manModelContour, instantVector);
 363
 364         /*std::vector<int> instantVector;
 365         _instantPanel->getInstant( instantVector );
 366         std::string theName;
 367         theName= _modelManager->createOutline( manModelContour, instantVector );*/
 368         bool addedModel = theName.compare("") != 0;//??
 369         if( addedModel )
 370         {
 371                 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 372                 _theViewPanel->getSpacing(spc);
 373                 //Adding the manualContourControler to interface objects structure
 374                 //Adding the manualViewContour to interface objects structure
 375                 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 376                 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
 377         }
 378
 379 }
 380 manualContourModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
 381
 382         manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
 383         manualContourModel *manModelContour=NULL;
 384         manModelContour = manModelContourBullEye;
 385         if (panel!=NULL){
 386                 int iCrown,sizeCrowns,iSector,sizeSectors;
 387                 double radioA,radioB,ang,angDelta ;
 388                 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
 389                 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
 390                 {
 391                         sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
 392                         radioB  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
 393                         if (iCrown==sizeCrowns-1)
 394                         {
 395                                 radioA  = 0;
 396                         } else {
 397                                 radioA  = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
 398                         }
 399                         radioA=radioA/100.0;
 400                         radioB=radioB/100.0;
 401                         for ( iSector=0 ; iSector<sizeSectors  ; iSector++ )
 402                         {
 403                                 ang             = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
 404                                 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
 405                                 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
 406                         } // for iSector
 407                 } // for iCrown
 408         } // if _panelBullEyeOptions
 409
 410         return manModelContour;
 411 }
 412 void wxContourMainFrame :: saveState(){
 413
 414         std::string temp = kernelManager->saveState();
 415         saveFileWithContours(temp);
 416 }
 417
 418 void wxContourMainFrame::onDeleteContour(){
 419         //JCP 20-10-08 Undo redo implementation
 420                 saveState();
 421                 //JCP 20-10-08 Undo redo implementation
 422
 423                 std::vector<std::string> lstKeyNameToBeErase;
 424                 lstKeyNameToBeErase             = _theViewPanel->getSceneManager()->getSelectedObjects();
 425                 deleteContours( lstKeyNameToBeErase );
 426 /*JCP 19 - 11 - 08
 427                 int i,size=_sceneManager->getSelectedObjects().size();
 428                 for(i=0;i<size;i++)
 429                 {
 430                         std::string keyName             = _sceneManager->getSelectedObjects()[i];
 431                         int ispartofstaticlist  = this->_modelManager->IsPartOfStaticList( keyName );
 432                         if ( ispartofstaticlist>=0 )
 433                         {
 434                                 std::vector<int> tempVector;
 435                                 _instantPanel->getInstant( tempVector );
 436                                 Instant instant(&tempVector);
 437                                 this->_modelManager->ChangeContourOfList(keyName, &instant);
 438                         }
 439                 }
 440
 441                 std::vector<std::string> lstKeyName;
 442                 std::vector<std::string> lstKeyNameActualSlice;
 443                 std::vector<std::string> lstKeyNameToBeErase;
 444
 445                 lstKeyNameToBeErase             = _sceneManager->getSelectedObjects();
 446                 lstKeyNameActualSlice   = _sceneManager->GetlstContoursNameActualSlice();
 447                 int k,kSize=lstKeyNameToBeErase.size();
 448                 int j,jSize=lstKeyNameActualSlice.size();
 449                 bool ok;
 450                 for (k=0;k<kSize; k++)
 451                 {
 452                         ok=false;
 453                         for (j=0;j<jSize; j++)
 454                         {
 455                                 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
 456                                 {
 457                                         ok=true;
 458                                 }
 459                         } // for j
 460                         if (ok==true)
 461                         {
 462                                 lstKeyName.push_back( lstKeyNameToBeErase[k] );
 463                         } // if ok
 464                 } // for k
 465
 466                 deleteContours( lstKeyName );
 467 JCP 19 - 11 - 08*/
 468 }
 469
 470 void wxContourMainFrame :: deleteContours( std::vector<std::string>  keyNamesVector )
 471 {
 472         int i,size=keyNamesVector.size();
 473         for (i=0;i<size;i++)
 474         {
 475                 deleteContour( keyNamesVector[i] );
 476         }
 477 }
 478
 479 void wxContourMainFrame :: deleteContour( std::string theKeyName ){
 480         /*
 481         manualContourModel                      * cModel;
 482         manualViewBaseContour           * cViewer;
 483         manualContourBaseControler      * cControler;
 484
 485         ContourWrap_ViewControl *conwrapviewControl =  _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
 486         cControler      = conwrapviewControl->getControler();*/
 487
 488         //JCP 21 - 11 - 2008
 489         bool isedit = _theViewPanel->isEditableCControler(theKeyName);
 490         bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
 491
 492         if (isedit  && ispartofstaticlst)
 493         {
 494                 _theViewPanel->removeFromScene(theKeyName);
 495
 496                 kernelManager->deleteCModel(theKeyName);
 497                 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
 498                 //cViewer               = conwrapviewControl->getViewer();
 499                 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
 500                 //cControler* conwrapviewControl->getControler();
 501 //EED Borrame
 502 //FILE *ff = fopen("c:/temp/wxVtkBaseView_SceneManagerStadistics.txt","a+");
 503 //fprintf(ff,"EED wxContourEventHandler::deleteContours() \n" );
 504 //fprintf(ff,"    %s %p\n",keyNamesVector[i].c_str(),  cControler );
 505 //fclose(ff);
 506         //      delete cModel;
 507         //      delete cViewer;
 508         //      delete cControler;
 509         } // if editable
 510 //JCP 21 - 11 - 08
 511 }
 512
 513 void wxContourMainFrame::onDeleteContoursActSlice(){
 514         //JCP 20-10-08 Undo redo implementation
 515         saveState();
 516         //JCP 20-10-08 Undo redo implementation
 517         deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
 518 }
 519 void wxContourMainFrame::onDeleteAllContours(){
 520         //JCP 20-10-08 Undo redo implementation
 521         saveState();
 522         deleteAllContours();
 523 }
 524 void wxContourMainFrame::deleteAllContours(){
 525         //JCP 20-10-08 Undo redo implementation
 526
 527         wxBusyCursor wait;
 528         std::vector<int> tempVector;
 529         _instantPanel->getInstant( tempVector );
 530
 531 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
 532 //              the values in GetStart and GetEnd will then not be initialize also.
 533 //              We use instead the values given when initializing the _deletepanel.
 534
 535         //int minZ = _mbarrangeDeleteAll->GetStart();
 536         //int maxZ = _mbarrangeDeleteAll->GetEnd();
 537         int minZ, maxZ;
 538
 539         minZ = 0;
 540         maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
 541
 542 //JCP --08-09-2008
 543
 544         _theViewPanel->getSceneManager()->removeSceneContours( );
 545         _theViewPanel->getSceneManager()->removeAllOutlines();
 546         kernelManager->removeAllOutlines();
 547 //JCP --08-09-2008
 548         /*
 549         if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
 550         {
 551                 _theViewPanel->getSceneManager()->removeSceneContours( );
 552                 _modelManager->removeAllOutlines();
 553                 _theViewPanel->getSceneManager()->removeAllOutlines();
 554
 555         } else {
 556                 for ( z=minZ ; z<=maxZ ; z++)
 557                 {
 558                         tempVector[1]=z;
 559                         Instant instant(&tempVector);
 560                         std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
 561
 562                         sizeLstContourThings = lstContourThings.size();
 563                         for (ii=0 ; ii<sizeLstContourThings ; ii++)
 564                         {
 565                                 ContourThing **contourthing = lstContourThings[ii];
 566                                 deleteContour( (*contourthing)->getName() );
 567                         } //for ii
 568                 }// for z
 569         } // if
 570 JCP --08-09-2008 */
 571 }
 572
 573 void wxContourMainFrame::setConceptValue( std::string name, int value ){
 574         _instantPanel->setConceptValue(name, value);
 575 }
 576
 577 ConceptDataWrap* wxContourMainFrame::getLastConceptData(){
 578         return _instantPanel->getLastConceptData();
 579 }
 580 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos ){
 581         return _instantPanel->getIfConceptCheckedAt( name, pos );
 582 }
 583
 584 void wxContourMainFrame::changeInstant()
 585 {
 586                 std::vector<int> instantVect;
 587                 _instantPanel->getInstant( instantVect );
 588 //              Instant * theInstant = new Instant ( &instantVect );
 589
 590                 //Setting the actual instant
 591                 //_actualInstant = theInstant;
 592
 593                 kernelManager->setInstant(instantVect);
 594                 //_modelManager->setInstant( _actualInstant );
 595
 596             updateActor();
 597                 updateInstantOutlines();
 598                 updateInstantImageData();
 599                 updateInstantAxes();
 600 }
 601
 602
 603 void wxContourMainFrame :: updateInstantOutlines()
 604 {
 605         _theViewPanel->removeSceneContours();
 606         _theViewPanel->addNameWrapperToScene();
 607
 608         //for( int i=0; i<size; i++)
 609         //{
 610         //      _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
 611         //}
 612 }
 613
 614 int wxContourMainFrame::getNamesWrappingSize(){
 615         return kernelManager->getNamesWrappingSize();
 616 }
 617 std::string wxContourMainFrame::getNameWrapping(int i){
 618         return kernelManager->getNameWrapping(i);
 619 }
 620
 621 void wxContourMainFrame::updateInstantImageData()
 622 {
 623         std::vector<int> inst;
 624         _instantPanel->getInstant(inst);
 625
 626         vtkImageData* img = kernelManager->getImageAtInstant(inst);
 627         if(img!=NULL){
 628                 _theViewPanel->changeImage(img);
 629                 showAxis(false);
 630         }else{
 631                 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
 632                 _theViewPanel->setImageSlice(z);
 633         }
 634 }
 635
 636 void wxContourMainFrame::updateInstantAxes()
 637 {
 638 }
 639
 640 void wxContourMainFrame :: updateActor()
 641 {
 642                 if (_actorPresent)
 643                 {
 644                         int minMax[2];
 645                         _pannew->onThresholdInstantChange(minMax);
 646
 647                         int     z = _theViewPanel->GetZ();
 648
 649                         vtkImageData * img = getImageData();
 650                         vtkImageReslice *imageReslice = vtkImageReslice::New();
 651
 652                         imageReslice->SetInput( img );
 653                         imageReslice->SetInformationInput(img);
 654                         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
 655                         imageReslice->SetResliceAxesOrigin(0,0,z);
 656                         imageReslice->SetOutputDimensionality(2);
 657                         imageReslice->SetInterpolationModeToLinear();
 658
 659                         img = imageReslice->GetOutput();
 660                         img->Update();
 661                         img->UpdateInformation();
 662
 663 //EED???                        wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
 664
 665                         double range[2];
 666                         img->GetScalarRange(range);
 667
 668                         int min = floor (range[0]);
 669                         int max = ceil (range[1]);
 670
 671                         //Lookup Table
 672                         vtkLookupTable *lookup = vtkLookupTable::New();
 673                         lookup->SetNumberOfTableValues(max+1);
 674                         lookup->SetTableRange(range);
 675                         lookup->SetAlphaRange(0, 1);
 676                         lookup->SetValueRange(0, 1);
 677                         lookup->SetSaturationRange(0, 0);
 678                         lookup->SetRampToLinear( );
 679
 680                         //Assign a fake color for the upper image, and set the white as transparent
 681                         int i;
 682                         int minVal = minMax[0];
 683                         int maxVal = minMax[1];
 684
 685                         for(i = min; i <= max; i++)
 686                         {
 687                                 if( i >= minVal && i <= maxVal )
 688                                 {
 689                                         lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
 690                                 }
 691                                 else if( i >= min && i < minVal )
 692                                 {
 693                                         lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
 694                                 }
 695                                 else if( i > maxVal && i < max )
 696                                 {
 697                                         lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
 698                                 }
 699                                 else
 700                                 {
 701                                         lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
 702                                 }
 703                         }
 704
 705                         lookup->Build( );
 706
 707                         vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
 708                         mapperImage->SetLookupTable( lookup );
 709                         mapperImage->SetInput( img );
 710                         //mapperImage->SetOutputFormatToRGBA( );
 711
 712                         _thresholdActor->SetInput( mapperImage->GetOutput() );
 713                         printf("EED wxContourMainFrame::updateActor %d \n" , z);
 714                         _thresholdActor->SetPosition( 0,0, 900-1 );
 715                 }
 716 }
 717
 718 void wxContourMainFrame::onChangeDeep(int val){
 719         _instantPanel->setConceptValue( "Axe Depth", (int)val );
 720         changeInstant();
 721 }
 722
 723
 724 void wxContourMainFrame::onCopy(){
 725         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
 726
 727         std::vector<int> tempVector;
 728         _instantPanel->getInstant( tempVector );
 729     _performingOperation->reset();
 730         _performingOperation->setStartCommand( COPY );
 731         _performingOperation->setStartOperationInstantVector( tempVector );
 732         _performingOperation->setKeyNamesOperationElems( currentSelection );
 733 }
 734
 735 void wxContourMainFrame::onPaste(){
 736
 737
 738         char theStartCommand = _performingOperation->getStartCommand();
 739         if (  theStartCommand == COPY )
 740         {
 741                 //JCP 20-10-08 Undo redo implementation
 742                 saveState();
 743                 //JCP 20-10-08 Undo redo implementation
 744                 std::vector<int> tempVector;
 745                 _instantPanel->getInstant( tempVector );
 746                 _performingOperation->setEndOperationInstantVector ( tempVector );
 747                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
 748                 int i,size = elems.size();
 749                 for( i=0; i<size; i++ )
 750                 {
 751                         createCopyContourOf( elems[i], tempVector, i>0 );
 752                 }
 753         }
 754 }
 755 void wxContourMainFrame::onUndo(){
 756         std::string filename;
 757         if(kernelManager->onUndoSaveFile(filename)){
 758                 saveFileWithContours(filename);
 759         }
 760         if(kernelManager->onUndo(filename)){
 761                 loadState(filename);
 762         }
 763 }
 764 void wxContourMainFrame::onRedo(){
 765         std::string filename;
 766         if(kernelManager->onRedo(filename)){
 767                 loadState(filename);
 768         }
 769
 770 }
 771 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 772 {
 773         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 774         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
 775         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 776 }
 777
 778 ///AD: 03-09    Copy the object and apply the given transformation
 779 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
 780 {
 781         std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
 782         manualContourModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
 783
 784         manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
 785         manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
 786
 787         double pnt1X = refPoint1->GetX();
 788         double pnt1Y = refPoint1->GetY();
 789 //      double pnt1Z = refPoint1->GetZ();
 790         double pnt2X = refPoint2->GetX();
 791         double pnt2Y = refPoint2->GetY();
 792 //      double pnt2Z = refPoint2->GetZ();
 793
 794         double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
 795         vtkTransform *t = vtkTransform::New();
 796
 797         t->PostMultiply();
 798         t->Identity();
 799         t->Translate(-pnt1X, -pnt1Y, 0);
 800         t->RotateZ(-angle);
 801         t->Scale(-1,1,1);
 802         t->RotateZ(angle);
 803         t->Translate(pnt1X, pnt1Y, 0);
 804         t->Update();
 805
 806         int i,size=manualModel->GetSizeLstPoints();
 807         for (i=0;i<size;i++)
 808         {
 809                 manualPoint * mp = manualModel->GetManualPoint(i);
 810                 float vecIn[3];
 811                 float vecOut[3];
 812                 vecIn[0]=mp->GetX();
 813                 vecIn[1]=mp->GetY();
 814                 vecIn[2]=mp->GetZ();
 815                 t->TransformPoint( vecIn, vecOut );
 816                 mp->SetPointX( vecOut[0] );
 817                 mp->SetPointY( vecOut[1] );
 818                 mp->SetPointZ( vecOut[2] );
 819         }
 820
 821         _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
 822 }
 823
 824 void wxContourMainFrame ::loadState(std::string filename){
 825         char tmp[255];
 826         FILE *pFile=fopen(filename.c_str(),"r+");
 827
 828         fscanf(pFile,"%s",tmp); // --CreaContour--
 829
 830         fscanf(pFile,"%s",tmp); // Version
 831         fscanf(pFile,"%s",tmp); // 1.0.1
 832         std::string version(tmp);
 833
 834         deleteAllContours();
 835
 836         openContours(pFile,false);
 837         if (version!="1.0.0"){
 838                 openContours(pFile,true);
 839         }
 840
 841         fclose(pFile);
 842
 843         //_theViewPanel->getSceneManager()->removeSceneContours();
 844         //changeInstant();
 845
 846 }
 847
 848 void wxContourMainFrame::onLoad(){
 849         char tmp[255];
 850         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
 851         if (dialog.ShowModal() == wxID_OK)
 852         {
 853                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 854                 FILE *pFile=fopen(fileNameContourROI.c_str(),"r+");
 855
 856                 fscanf(pFile,"%s",tmp); // --CreaContour--
 857
 858                 fscanf(pFile,"%s",tmp); // Version
 859                 fscanf(pFile,"%s",tmp); // 1.0.1
 860                 std::string version(tmp);
 861
 862                 openContours(pFile,false);
 863                 if (version!="1.0.0"){
 864                         openContours(pFile,true);
 865                 }
 866 //                        _theViewPanel->getSceneManager()->openFileWithContours(ff);
 867
 868                 fclose(pFile);
 869         }
 870         _theViewPanel->getSceneManager()->removeSceneContours();
 871         changeInstant();
 872 }
 873 void wxContourMainFrame::onSave(){
 874         wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
 875         if (dialog.ShowModal() == wxID_OK)
 876         {
 877                 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
 878                 kernelManager->setCurrentFileName(fileNameContourROI);
 879                 saveFileWithContours( fileNameContourROI );
 880         }
 881 }
 882 void wxContourMainFrame::saveFileWithContours( std::string filename ){
 883
 884         FILE *pFile=fopen(filename.c_str(),"w+");
 885         std::vector< std::string > lstNameThings;
 886         int i,sizeLstNameThings;
 887
 888         fprintf(pFile,"--CreaContour--\n");
 889         fprintf(pFile,"Version %s\n", "1.0.1" );
 890
 891         // Normal Contours
 892         lstNameThings           = kernelManager->GetLstNameThings();
 893         sizeLstNameThings       = lstNameThings.size();
 894         fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
 895         for (i=0 ; i<sizeLstNameThings ; i++)
 896         {
 897                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 898                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 899         }// for i
 900
 901         //-- Contours Statics
 902         lstNameThings           = kernelManager->GetLstNameThingsStatic();
 903         sizeLstNameThings       = lstNameThings.size();
 904         fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
 905         for (i=0 ; i<sizeLstNameThings ; i++)
 906         {
 907                 kernelManager->SaveThingName( pFile, lstNameThings[i] );
 908                 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
 909         }// for i
 910         fclose(pFile);
 911 }
 912
 913 void wxContourMainFrame::openContours( FILE *pFile, bool staticContour ){
 914         char tmp[255];
 915         fscanf(pFile,"%s",tmp); // NumberOfContours
 916         fscanf(pFile,"%s",tmp); // ##
 917         int numberOfContours = atoi(tmp);
 918
 919         std::vector<int> instantVector;
 920         int typeContourModel;
 921         manualContourModel *manModelContour;
 922         int typeView;
 923
 924         int i;
 925         for (i=0;i<numberOfContours;i++)
 926         {
 927                 instantVector.clear();
 928                 fscanf(pFile,"%s",tmp); // Instant
 929
 930                 fscanf(pFile,"%s",tmp); // 1
 931                 instantVector.push_back( atoi(tmp) );
 932                 fscanf(pFile,"%s",tmp); // 2
 933                 instantVector.push_back( atoi(tmp) );
 934                 fscanf(pFile,"%s",tmp); // 3
 935                 instantVector.push_back( atoi(tmp) );
 936                 fscanf(pFile,"%s",tmp); // 4
 937                 instantVector.push_back( atoi(tmp) );
 938                 fscanf(pFile,"%s",tmp); // 5
 939                 instantVector.push_back( atoi(tmp) );
 940                 fscanf(pFile,"%s",tmp); // 6
 941                 instantVector.push_back( atoi(tmp) );
 942
 943
 944                 fscanf(pFile,"%s",tmp); // TypeContourModel
 945                 fscanf(pFile,"%s",tmp); // ##
 946                 typeContourModel = atoi(tmp);
 947
 948                 manModelContour =  kernelManager->factoryManualContourModel(typeContourModel);
 949                 manModelContour->Open(pFile);
 950
 951                 fscanf(pFile,"%s",tmp); // TypeView
 952                 fscanf(pFile,"%s",tmp); // ##
 953                 typeView = atoi(tmp);
 954
 955
 956 //                      if (typeView==1)
 957 //                      {
 958 //                      }
 959
 960
 961                 std::string theName;
 962                 theName = kernelManager->createOutline( manModelContour, instantVector );
 963                 bool addedModel = theName.compare("") != 0;
 964                 if( addedModel )
 965                 {
 966                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
 967                         _theViewPanel->getSpacing(spc);
 968                         //Adding the manualContourControler to interface objects structure
 969                         //Adding the manualViewContour to interface objects structure
 970                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
 971                         _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
 972                 }
 973
 974                 if (staticContour==true)
 975                 {
 976                         Instant instant(&instantVector);
 977                         kernelManager->changeContourOfManager( theName , &instant );
 978                 }
 979
 980         }// for  numberOfContours
 981
 982 }
 983
 984 void wxContourMainFrame::RefreshInterface(){
 985         changeInstant();
 986         _theViewPanel->RefreshInterface();
 987         //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
 988         //wxvtk2dbaseview->Refresh();
 989 }
 990
 991 vtkImageData* wxContourMainFrame::getImageData(){
 992         return _theViewPanel->getImageData();
 993 }
 994
 995 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
 996 {
 997         //JCP 20-10-08 Undo redo implementation
 998         saveState();
 999         //JCP 20-10-08 Undo redo implementation
1000
1001         wxBusyCursor wait;
1002         int                                     x                                       = _theViewPanel->GetX();
1003         int                                     y                                       = _theViewPanel->GetY();
1004         int                                     z                                       = _theViewPanel->GetZ();
1005         SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1006         RefreshInterface();
1007 }
1008
1009 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1010 {
1011
1012         int typeofcontour = 1;
1013         //Image Data
1014         vtkImageData    *imagedata      = getImageData();
1015
1016         //Tipo de pixeles a utilizar internamente en ITK
1017   typedef   float  InternalPixelType;
1018   const     unsigned int    Dimension = 2;
1019   typedef itk::Image< InternalPixelType, Dimension >  InternalImageType;
1020
1021   //Tipo de pixeles de salida 1
1022   typedef unsigned char OutputPixelType;
1023   typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1024
1025   //Tipo de pixeles de salida 2
1026   typedef unsigned short OutputPixelType2;
1027   typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1028
1029   //DefiniciÛn del thresholder
1030   typedef itk::BinaryThresholdImageFilter<
1031                         InternalImageType,
1032                         OutputImageType    >    ThresholdingFilterType;
1033
1034   //DefiniciÛn del primer filtro de conversiÛn de pixeles
1035   typedef itk::CastImageFilter<
1036                OutputImageType, OutputImageType2 >  CastFilterType;
1037
1038   //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1039   typedef itk::CastImageFilter<
1040                OutputImageType2, InternalImageType >  CastFilterType2;
1041
1042   //Tercer tipo de conversiÛn
1043   typedef itk::RescaleIntensityImageFilter<
1044                                InternalImageType,
1045                                OutputImageType >   CastFilterType3;
1046
1047   //Cuarto tipo de conversiÛn
1048   typedef itk::RescaleIntensityImageFilter<
1049                                OutputImageType,
1050                                OutputImageType >   CastFilterType4;
1051
1052   ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1053
1054   thresholder->SetLowerThreshold( 0.0 );
1055   thresholder->SetUpperThreshold( 128 );
1056
1057   thresholder->SetOutsideValue(  255  );
1058   thresholder->SetInsideValue(  0 );
1059
1060   //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1061   typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1062   typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1063   typedef  itk::ImageFileWriter<  OutputImageType  > WriterType;
1064
1065   ConnectorType::Pointer connector= ConnectorType::New();
1066   ConnectorType2::Pointer connector2= ConnectorType2::New();
1067
1068
1069   CastFilterType::Pointer filter=CastFilterType::New();
1070   CastFilterType2::Pointer filter2=CastFilterType2::New();
1071
1072   connector->SetInput( imagedata );
1073   filter2->SetInput(connector->GetOutput());
1074
1075   typedef   itk::CurvatureAnisotropicDiffusionImageFilter<
1076                                InternalImageType,
1077                                InternalImageType >  SmoothingFilterType;
1078
1079   SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1080
1081   typedef   itk::GradientMagnitudeRecursiveGaussianImageFilter<
1082                                InternalImageType,
1083                                InternalImageType >  GradientFilterType;
1084
1085   typedef   itk::SigmoidImageFilter<
1086                                InternalImageType,
1087                                InternalImageType >  SigmoidFilterType;
1088
1089   GradientFilterType::Pointer  gradientMagnitude = GradientFilterType::New();
1090
1091   SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1092
1093   sigmoid->SetOutputMinimum(  0.0  );
1094   sigmoid->SetOutputMaximum(  255.0  );
1095
1096
1097   typedef  itk::FastMarchingImageFilter<
1098                               InternalImageType,
1099                               InternalImageType >    FastMarchingFilterType;
1100
1101
1102   FastMarchingFilterType::Pointer  fastMarching = FastMarchingFilterType::New();
1103
1104   typedef  itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1105                 InternalImageType >    GeodesicActiveContourFilterType;
1106   GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1107                                      GeodesicActiveContourFilterType::New();
1108
1109   typedef  itk::ZeroCrossingImageFilter<
1110                               InternalImageType,
1111                               InternalImageType >    ZeroCrossingFilterType;
1112 ZeroCrossingFilterType::Pointer zeroCrossing =
1113                                                 ZeroCrossingFilterType::New();
1114
1115 const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1116
1117   geodesicActiveContour->SetPropagationScaling( propagationScaling );
1118   geodesicActiveContour->SetCurvatureScaling( 1.0 );
1119   geodesicActiveContour->SetAdvectionScaling( 1.0 );
1120
1121   geodesicActiveContour->SetMaximumRMSError( 0.02 );
1122   int it=atoi(  crea::wx2std(iter).c_str() );
1123   geodesicActiveContour->SetNumberOfIterations( it );
1124
1125   smoothing->SetInput( filter2->GetOutput() );
1126   gradientMagnitude->SetInput( smoothing->GetOutput() );
1127   sigmoid->SetInput( gradientMagnitude->GetOutput() );
1128   fastMarching->SetInput( sigmoid->GetOutput() );
1129   geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1130   geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1131
1132   zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1133   //thresholder->SetInput( zeroCrossing->GetOutput() );
1134   thresholder->SetInput( geodesicActiveContour->GetOutput() );
1135   connector2->SetInput( thresholder->GetOutput()  );
1136
1137
1138   smoothing->SetTimeStep( 0.125 );
1139   smoothing->SetNumberOfIterations(  5 );
1140   smoothing->SetConductanceParameter( 9.0 );
1141
1142
1143   const double sigma = atof(  crea::wx2std(sigm).c_str() );
1144   gradientMagnitude->SetSigma(  sigma  );
1145
1146   const double alpha =  atof(  crea::wx2std(alf).c_str() );
1147   const double beta  =  atof(  crea::wx2std(bet).c_str() );
1148
1149   sigmoid->SetAlpha( alpha );
1150   sigmoid->SetBeta(  beta  );
1151
1152   typedef FastMarchingFilterType::NodeContainer  NodeContainer;
1153   typedef FastMarchingFilterType::NodeType       NodeType;
1154
1155   NodeContainer::Pointer seeds = NodeContainer::New();
1156
1157   InternalImageType::IndexType  seedPosition;
1158   seedPosition[0] = x;
1159   seedPosition[1] = y;
1160
1161   const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1162
1163   NodeType node;
1164
1165   const double seedValue = - initialDistance;
1166
1167   node.SetValue( seedValue );
1168   node.SetIndex( seedPosition );
1169
1170   seeds->Initialize();
1171   seeds->InsertElement( 0, node );
1172
1173   fastMarching->SetTrialPoints( seeds );
1174
1175   fastMarching->SetSpeedConstant( 1.0 );
1176
1177   fastMarching->SetOutputSize(
1178            connector->GetOutput()->GetBufferedRegion().GetSize() );
1179
1180   fastMarching->SetStoppingValue( 800 );
1181   try
1182     {
1183
1184         connector2->Update();
1185         vtkImageData *idata = connector2->GetOutput();
1186
1187         vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1188
1189         cntVTK->SetInput( idata );
1190
1191         cntVTK->SetNumberOfContours( 1 );
1192         cntVTK->SetValue( 0, 255 );
1193         cntVTK->Update( );
1194         cntVTK->UpdateInformation();
1195
1196         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1197         cpd->SetInput( cntVTK->GetOutput( ) );
1198         cpd->Update( );
1199         cpd->UpdateInformation();
1200
1201         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1202         conn->SetExtractionModeToLargestRegion( );
1203         conn->SetInput( cpd->GetOutput( ) );
1204         conn->Update( );
1205         conn->UpdateInformation();
1206
1207         vtkStripper* vtkstripper = vtkStripper::New( );
1208         vtkstripper->SetInput( conn->GetOutput() );
1209         vtkstripper->Update();
1210         vtkstripper->UpdateInformation();
1211
1212
1213         vtkPolyData* polyDataResult =  cntVTK->GetOutput();
1214         std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1215         polyDataResult->Update( );
1216         polyDataResult->UpdateInformation();
1217
1218 //EED
1219         /*
1220 ofstream myfile;
1221 myfile.open ("C:/Creatis/example.txt");
1222 myfile << "\n";
1223 polyDataResult->Print(myfile);
1224 myfile << "-------------------------------------\n";
1225 polyDataResult->GetLines()->Print(myfile);
1226 myfile.close();*/
1227
1228         cntVTK          -> Delete();
1229         cpd                     -> Delete();
1230         conn            -> Delete();
1231
1232
1233 //--Calculating control points
1234
1235         std::vector<double> vecX;
1236         std::vector<double> vecY;
1237         std::vector<double> vecXo;
1238         std::vector<double> vecYo;
1239         std::vector<double>::iterator vecXoi;
1240         std::vector<double>::iterator vecYoi;
1241         std::vector<double> vecZ;
1242
1243         std::vector<double> vecCtrlPointX;
1244         std::vector<double> vecCtrlPointY;
1245         std::vector<double> vecCtrlPointZ;
1246
1247
1248         double *p;
1249         double xAct=0;
1250         double yAct=0;
1251         int ii,size=polyDataResult->GetNumberOfPoints();
1252 ofstream myfile;
1253 myfile.open ("C:/Creatis/example2.txt");
1254
1255         size=polyDataResult->GetNumberOfPoints();
1256         for (ii=0;ii<size;ii++)
1257         {
1258                 if(ii==0)
1259                 {
1260                         xAct=x;
1261                         yAct=y;
1262                 }
1263                 p       = polyDataResult->GetPoint(ii);
1264                 double x=p[0];
1265                 double y=p[1];
1266                 /*if(fabs(yAct-y)>20)
1267                 {
1268                         if((xAct-x)>1 || (xAct-x)<-1)
1269                         {
1270                         vecX.push_back( p[0] );
1271                         vecY.push_back( p[1] );
1272                         myfile <<p[0]<<","<<p[1]<<"\n";
1273                         std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1274                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1275                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1276                         vecZ.push_back( 900 );
1277                         xAct=x;
1278                         yAct=y;
1279                         }
1280                         else
1281                         {
1282                                 vecXo.push_back(p[0]);
1283                                 vecYo.push_back(p[1]);
1284                         }
1285
1286                 }
1287                 else*/ if(fabs(xAct-x)>11)
1288                 {
1289                         vecXo.push_back(p[0]);
1290                         vecYo.push_back(p[1]);
1291                 }
1292                 else
1293                 {
1294                 vecX.push_back( p[0] );
1295                 myfile <<p[0]<<","<<p[1]<<"\n";
1296                 std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1297                 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1298                 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1299                 vecY.push_back( p[1] );
1300                 vecZ.push_back( 900 );
1301                 xAct=x;
1302                 yAct=y;
1303                 }
1304
1305
1306         }
1307
1308         while(!vecXo.empty())
1309         {
1310                 vecX.push_back(vecXo.back());
1311                 std::cout<<" x Siguiente "<<vecXo.back();
1312                 vecXo.pop_back();
1313                 vecZ.push_back( 900 );
1314         }
1315         while(!vecYo.empty())
1316         {
1317                 vecY.push_back(vecYo.back());
1318                         vecYo.pop_back();
1319         }
1320         myfile.close();
1321
1322         /*for(int l=0;l<vecX.size();l++)
1323         {
1324                 if(l==0)
1325                 {
1326             vecXo.push_back(p[0]);
1327                         vecYo.push_back(p[1]);
1328                 }
1329                 else
1330                 {
1331                         if(vecXoi[l-1]==)
1332                         {
1333                         }
1334                 }
1335
1336         }*/
1337
1338         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1339
1340         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1341
1342 int method=2;
1343         if (method==0){
1344                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1345         }
1346         else if (method==1){
1347                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1348         }
1349         else if (method==2){
1350                 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1351                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1352         }
1353         //--Adding contour to the system
1354
1355         std::vector<int> actualInstantVector;
1356         _instantPanel->getInstant( actualInstantVector );
1357         actualInstantVector[1]=z;
1358
1359         int j,sizeCtrPt = vecCtrlPointX.size();
1360
1361         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1362         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1363         if (sizeCtrPt>=3){
1364                 for (j=0 ; j<sizeCtrPt ; j++)
1365                 {
1366                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1367                 } // for
1368                 std::string theName;
1369                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1370                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1371                 bool addedModel = theName.compare("") != 0;
1372                 if( addedModel )
1373                 {
1374                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1375                         _theViewPanel->getSpacing(spc);
1376                         //Adding the manualContourControler to interface objects structure
1377                         //Adding the manualViewContour to interface objects structure
1378                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1379                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1380                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1381                 }       // if addedModel
1382         } // if sizeCtrPt
1383
1384
1385
1386                  WriterType::Pointer writer = WriterType::New();
1387          CastFilterType3::Pointer caster = CastFilterType3::New();
1388
1389                  caster->SetInput( gradientMagnitude->GetOutput() );
1390                  writer->SetInput( caster->GetOutput() );
1391                  writer->SetFileName("Gradient Magnitude.png");
1392                  caster->SetOutputMinimum(   0 );
1393                  caster->SetOutputMaximum( 255 );
1394                  writer->Update();
1395
1396                  CastFilterType3::Pointer caster2 = CastFilterType3::New();
1397                  WriterType::Pointer writer2 = WriterType::New();
1398
1399                  caster2->SetInput( sigmoid->GetOutput() );
1400                  writer2->SetInput( caster2->GetOutput() );
1401                  writer2->SetFileName("Sigmoid.png");
1402                  caster2->SetOutputMinimum(   0 );
1403                  caster2->SetOutputMaximum( 255 );
1404                  writer2->Update();
1405
1406                  CastFilterType3::Pointer caster3 = CastFilterType3::New();
1407                  WriterType::Pointer writer3 = WriterType::New();
1408
1409                  caster3->SetInput( fastMarching->GetOutput() );
1410                  writer3->SetInput( caster3->GetOutput() );
1411                  writer3->SetFileName("FastMarching.bmp");
1412                  caster3->SetOutputMinimum(   0 );
1413                  caster3->SetOutputMaximum( 255 );
1414                  writer3->Update();
1415
1416                  CastFilterType3::Pointer caster4 = CastFilterType3::New();
1417                  WriterType::Pointer writer4 = WriterType::New();
1418
1419                  caster4->SetInput( geodesicActiveContour->GetOutput() );
1420                  writer4->SetInput( caster4->GetOutput() );
1421                  writer4->SetFileName("GeodesicActiveContour.png");
1422                  caster4->SetOutputMinimum(   0 );
1423                  caster4->SetOutputMaximum( 255 );
1424                  writer4->Update();
1425
1426                  CastFilterType3::Pointer caster5 = CastFilterType3::New();
1427                  WriterType::Pointer writer5 = WriterType::New();
1428
1429                  caster5->SetInput( zeroCrossing->GetOutput() );
1430                  writer5->SetInput( caster5->GetOutput() );
1431                  writer5->SetFileName("ZeroCrossing.bmp");
1432                  caster5->SetOutputMinimum(   0 );
1433                  caster5->SetOutputMaximum( 255 );
1434                  writer5->Update();
1435     }
1436   catch( itk::ExceptionObject & excep )
1437     {
1438     std::cerr << "Exception caught !" << std::endl;
1439     std::cerr << excep << std::endl;
1440     }
1441 }
1442
1443 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1444
1445         //JCP 20-10-08 Undo redo implementation
1446         saveState();
1447         //JCP 20-10-08 Undo redo implementation
1448
1449         wxBusyCursor wait;
1450         int                                     x                                       = _theViewPanel->GetX();
1451         int                                     y                                       = _theViewPanel->GetY();
1452         int                                     z                                       = _theViewPanel->GetZ();
1453         SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1454         RefreshInterface();
1455 }
1456
1457
1458 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1459 {
1460         int typeofcontour = 1;
1461         //--Extracting Contour
1462         //vtkImageData  *imagedata      = _theViewPanel->getSceneManager()->GetImageData();
1463         vtkImageData    *imagedata      = getImageData();
1464 //              double                  *range          = imagedata->GetScalarRange();
1465 //              double                  thr                     = 1;
1466
1467         vtkImageReslice *imageReslice = vtkImageReslice::New();
1468 //EED
1469 //              double spc[3];
1470 //              imagedata->GetSpacing(spc);
1471 //              x = x*spc[0];
1472 //              y = y*spc[1];
1473 //              z = z*spc[3];
1474
1475         imageReslice->SetInput( imagedata );
1476         imageReslice->SetInformationInput(imagedata);
1477         imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1478         imageReslice->SetResliceAxesOrigin(0,0,z);
1479         imageReslice->SetOutputDimensionality(2);
1480         imageReslice->SetInterpolationModeToLinear();
1481
1482         imagedata = imageReslice->GetOutput();
1483         imagedata->Update();
1484         imagedata->UpdateInformation();
1485
1486         vtkContourFilter* cntVTK = vtkContourFilter::New( );
1487         cntVTK->SetInput( imagedata );
1488
1489         cntVTK->SetNumberOfContours( 1 );
1490         //cntVTK->SetValue( 0, vmin );
1491 //              cntVTK->SetValue( 0, (range[1]*thr/100) );
1492         cntVTK->SetValue( 1, isovalue );
1493 //      cntVTK->SetValue( 1, vmax );
1494         cntVTK->Update( );
1495         cntVTK->UpdateInformation();
1496
1497         vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1498         cpd->SetInput( cntVTK->GetOutput( ) );
1499         cpd->ConvertLinesToPointsOff( );
1500         cpd->Update( );
1501         cpd->UpdateInformation();
1502
1503         vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1504         conn->SetExtractionModeToClosestPointRegion( );
1505         //conn->SetMaxRecursionDepth( 3000 );
1506
1507         conn->SetInput( cpd->GetOutput( ) );
1508
1509         conn->SetClosestPoint( x, y, 0 );
1510         conn->Update( );
1511         conn->UpdateInformation();
1512
1513         vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1514         cpd2->SetInput( conn->GetOutput( ) );
1515         cpd2->Update();
1516         cpd2->UpdateInformation();
1517
1518         vtkStripper* vtkstripper = vtkStripper::New( );
1519         vtkstripper->SetInput( cpd2->GetOutput() );
1520         vtkstripper->Update();
1521         vtkstripper->UpdateInformation();
1522
1523
1524         vtkPolyData* polyDataResult =  vtkstripper->GetOutput();
1525
1526         polyDataResult->Update( );
1527         polyDataResult->UpdateInformation();
1528
1529 /* EED
1530 ofstream myfile;
1531 myfile.open ("c:/temp/example.txt");
1532 myfile << "\n";
1533 polyDataResult->Print(myfile);
1534 myfile << "-------------------------------------\n";
1535 polyDataResult->GetLines()->Print(myfile);
1536 myfile.close();
1537 */
1538
1539         cntVTK          -> Delete();
1540         cpd2            -> Delete();
1541         cpd                     -> Delete();
1542         conn            -> Delete();
1543
1544
1545 //--Calculating control points
1546
1547         std::vector<double> vecX;
1548         std::vector<double> vecY;
1549         std::vector<double> vecZ;
1550
1551         std::vector<double> vecCtrlPointX;
1552         std::vector<double> vecCtrlPointY;
1553         std::vector<double> vecCtrlPointZ;
1554
1555
1556         double *p;
1557         int ii,size=polyDataResult->GetNumberOfPoints();
1558         int id;
1559         for (ii=1;ii<=size;ii++)
1560         {
1561                 id      = polyDataResult->GetLines()->GetData()->GetValue(ii);
1562                 p       = polyDataResult->GetPoint(id);
1563 //              double x=p[0];
1564 //              double y=p[1];
1565                 vecX.push_back( p[0] );
1566                 vecY.push_back( p[1] );
1567                 vecZ.push_back( 900 );
1568 //                      vecZ.push_back( p[2] );
1569         }
1570
1571
1572         ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1573         extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1574
1575 //PROOFS
1576         /*if (methodRadiobox->GetSelection()==0){
1577                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1578         }
1579         if (methodRadiobox->GetSelection()==1){
1580                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1581         }
1582         if (methodRadiobox->GetSelection()==2){
1583                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1584                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1585         }*/
1586
1587         if (method==0){
1588                 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1589         }
1590         else if (method==1){
1591                 extractcontrolpoints2d->GetControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1592         }
1593         else if (method==2){
1594                 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
1595                 extractcontrolpoints2d->GetSamplingControlPoints(  &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1596         }
1597
1598         //--Adding contour to the system
1599
1600         std::vector<int> actualInstantVector;
1601         _instantPanel->getInstant( actualInstantVector );
1602         actualInstantVector[1]=z;
1603
1604         int j,sizeCtrPt = vecCtrlPointX.size();
1605         manualContourModel *manModelContour =  kernelManager->factoryManualContourModel( typeofcontour );
1606         manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1607         if (sizeCtrPt>=3){
1608                 for (j=0 ; j<sizeCtrPt ; j++)
1609                 {
1610                         manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j]  );
1611                 } // for
1612                 std::string theName;
1613                 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1614                 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1615                 bool addedModel = theName.compare("") != 0;
1616                 if( addedModel )
1617                 {
1618                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1619                         _theViewPanel->getSpacing(spc);
1620                         //Adding the manualContourControler to interface objects structure
1621                         //Adding the manualViewContour to interface objects structure
1622                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1623                         _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1624                         //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1625                 }       // if addedModel
1626         } // if sizeCtrPt
1627 }
1628 int wxContourMainFrame::GetImageDataSizeZ(){
1629         return _theViewPanel->GetImageDataSizeZ();
1630 }
1631
1632 void wxContourMainFrame::GetImageDataRange(double *range){
1633         _theViewPanel->GetImageDataRange(range);
1634 }
1635
1636 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
1637         //JCP 20-10-08 Undo redo implementation
1638         saveState();
1639         //JCP 20-10-08 Undo redo implementation
1640
1641         wxBusyCursor wait;
1642         int                                     x                                       = _theViewPanel->GetX();
1643         int                                     y                                       = _theViewPanel->GetY();
1644         int z;
1645         double porcent;
1646         wxString tmpString;
1647         double totalZ = maxZ-minZ+1;
1648         for( z=minZ ; z<=maxZ ; z++ )
1649         {
1650                 porcent = 100.0* (z-minZ)/totalZ;
1651                 tmpString.Printf(_T("  %d %c            %d/%d            %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
1652                 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
1653                 //_staticTextSegmentation->SetLabel(tmpString);
1654                 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
1655         }
1656         interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T("   "));
1657         RefreshInterface();
1658 }
1659
1660
1661 //Creates a reference line to be used as the axis of the mirroring
1662 void wxContourMainFrame::referenceLine()
1663 {
1664         if (_refLineControl==NULL)
1665         {
1666                 wxBusyCursor wait;
1667                 double spc[3];
1668
1669                 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
1670                 vtkimagedata->GetSpacing(spc);
1671
1672                 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1673
1674                 _refLineControl = new manualLineControler();
1675                 _refLineModel   = new manualContourModelLine();
1676                 _refLineView = new manualViewLine();
1677                 _refLineView->SetModel( _refLineModel );
1678                 _refLineView->SetWxVtkBaseView( viewer2D );
1679                 _refLineView->SetRange( 2 );
1680                 _refLineView->SetZ( 1200 );
1681
1682                 _refLineView->SetSpacing(spc);
1683
1684                 _refLineView->SetColorNormalContour(0, 0, 1);
1685                 _refLineView->SetColorEditContour(0, 0.5, 0.5);
1686                 _refLineView->SetWidthLine(4);
1687
1688                 _refLineControl->SetModelView( _refLineModel , _refLineView );
1689                 viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
1690                 _refLineModel->SetCloseContour(false);
1691                 _refLineControl->CreateNewManualContour();
1692
1693 //EED??         double z = _refLineControl->GetZ();
1694         /*
1695                 _refLineControl->AddPoint(50,100,z);
1696                 _refLineControl->AddPoint(80,40,z);
1697                 _refLineControl->SetCompleteCreation(true);
1698
1699                 _refLineModel->AddPoint(50,100,z);
1700                 _refLineModel->AddPoint(80,40,z);
1701                 _refLineModel->UpdateSpline();
1702
1703                 _refLineView->UpdateViewPoint(0);
1704                 _refLineView->UpdateViewPoint(1);
1705         */
1706
1707                 _refLineControl->SetActive(true);
1708                 _refLineView->RefreshContour();
1709         }
1710 }
1711
1712 //Hides the referenceLine
1713 void wxContourMainFrame::refLineHide()
1714 {
1715         if (_refLineControl!=NULL)
1716         {
1717                 if (_refLineControl->GetActive())
1718                 {
1719                         _refLineView->RemoveCompleteContourActor();
1720                         _refLineControl->SetEditable(false);
1721                         _refLineControl->SetActive(false);
1722
1723                         RefreshInterface();
1724                 }
1725         }
1726 }
1727
1728 //Shows the referenceLine
1729 void wxContourMainFrame::refLineShow()
1730 {
1731         if (_refLineControl!=NULL)
1732         {
1733                 if (_refLineControl->GetActive()==false)
1734                 {
1735                         wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
1736
1737                         _refLineView->SetModel( _refLineModel );
1738                         _refLineView->SetWxVtkBaseView( viewer2D );
1739                         _refLineView->SetRange( 2 );
1740                         _refLineView->SetZ( 1200 );
1741
1742                         _refLineControl->SetModelView( _refLineModel , _refLineView );
1743                         viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
1744                         _refLineControl->CreateNewManualContour();
1745                         _refLineControl->SetActive(true);
1746                         _refLineView->RefreshContour();
1747
1748                         RefreshInterface();
1749                 }
1750         }
1751 }
1752
1753 void wxContourMainFrame::refLineChangeWidth(int width)
1754 {
1755         _refLineView->SetWidthLine(width);
1756         _refLineView->RefreshContour();
1757
1758         RefreshInterface();
1759 }
1760
1761
1762 void wxContourMainFrame::onMirror()
1763 {
1764         //AD:02-09
1765         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
1766         std::vector<std::string> filterCurrentSelection;
1767
1768         std::vector<int> tempVector;
1769         _instantPanel->getInstant( tempVector );
1770     _performingOperation->reset();
1771         _performingOperation->setStartCommand( COPY );
1772         _performingOperation->setStartOperationInstantVector( tempVector );
1773         _performingOperation->setKeyNamesOperationElems( currentSelection );
1774
1775         char theStartCommand = _performingOperation->getStartCommand();
1776         if (  theStartCommand == COPY )
1777         {
1778                 //JCP 20-10-08 Undo redo implementation
1779                 saveState();
1780                 //JCP 20-10-08 Undo redo implementation
1781                 std::vector<int> tempVector;
1782                 _instantPanel->getInstant( tempVector );
1783                 _performingOperation->setEndOperationInstantVector ( tempVector );
1784                 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
1785                 int i,size = elems.size();
1786                 for( i=0; i<size; i++ )
1787                 {
1788                         createMirrorContourOf( elems[i], tempVector, i>0 );
1789                 }
1790         }
1791
1792         //deleteContour( _refName );
1793         //_refName = "";
1794 }
1795
1796 void wxContourMainFrame::onThreshold(int minVal, int maxVal)
1797 {
1798         if (!_actorPresent)
1799         {
1800                 int     z = _theViewPanel->GetZ();
1801
1802                 vtkImageData * img = getImageData();
1803                 vtkImageReslice *imageReslice = vtkImageReslice::New();
1804
1805                 imageReslice->SetInput( img );
1806                 imageReslice->SetInformationInput(img);
1807                 imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1808                 imageReslice->SetResliceAxesOrigin(0,0,z);
1809                 imageReslice->SetOutputDimensionality(2);
1810                 imageReslice->SetInterpolationModeToLinear();
1811
1812                 img = imageReslice->GetOutput();
1813                 img->Update();
1814                 img->UpdateInformation();
1815
1816                 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
1817
1818                 double range[2];
1819                 img->GetScalarRange(range);
1820
1821                 int min = floor (range[0]);
1822                 int max = ceil (range[1]);
1823
1824                 //Lookup Table
1825                 vtkLookupTable *lookup = vtkLookupTable::New();
1826                 lookup->SetNumberOfTableValues(max+1);
1827                 lookup->SetTableRange(range);
1828                 lookup->SetAlphaRange(0, 1);
1829                 lookup->SetValueRange(0, 1);
1830                 lookup->SetSaturationRange(0, 0);
1831                 lookup->SetRampToLinear( );
1832
1833                 //Assign a fake color for the upper image, and set the white as transparent
1834                 int i;
1835                 for(i = min; i <= max; i++)
1836                 {
1837                         if( i >= minVal && i <= maxVal )
1838                         {
1839                                 lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
1840                         }
1841                         else if( i >= min && i < minVal )
1842                         {
1843                                 lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1844                         }
1845                         else if( i > maxVal && i < max )
1846                         {
1847                                 lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1848                         }
1849                         else
1850                         {
1851                                 lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1852                         }
1853                 }
1854
1855                 lookup->Build( );
1856
1857                 vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
1858                 mapperImage->SetLookupTable( lookup );
1859                 mapperImage->SetInput( img );
1860                 //mapperImage->SetOutputFormatToRGBA( );
1861
1862                 if (_thresholdActor==NULL)
1863                 {
1864                         _thresholdActor = vtkImageActor::New( );
1865                         _thresholdActor->SetOpacity( 0.6 );
1866                         _thresholdActor->InterpolateOn(  );
1867                 }
1868 printf("EED wxContourMainFrame::onThreshold \n");
1869                 _thresholdActor->SetPosition( 0,0, z+1 );
1870                 _thresholdActor->SetInput( mapperImage->GetOutput() );
1871
1872                 baseView->GetRenderer()->AddActor( _thresholdActor );
1873                 _actorPresent = true;
1874         }
1875
1876         RefreshInterface();
1877 /*
1878         vtkImageViewer2* viewer = vtkImageViewer2::New();
1879         viewer->SetInput( upperImageActor->GetInput() );
1880         viewer->SetColorLevel((range[1]-range[0])/2);
1881         viewer->SetColorWindow(range[1]);
1882         viewer->GetRenderer()->AddActor( upperImageActor );
1883         viewer->Render();
1884 */
1885
1886 }
1887
1888 void wxContourMainFrame::onThresholdChange(int minVal, int maxVal)
1889 {
1890         if (_actorPresent)
1891         {
1892                 int     z = _theViewPanel->GetZ();
1893
1894                 vtkImageData * img = getImageData();
1895                 vtkImageReslice *imageReslice = vtkImageReslice::New();
1896
1897                 imageReslice->SetInput( img );
1898                 imageReslice->SetInformationInput(img);
1899                 imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1900                 imageReslice->SetResliceAxesOrigin(0,0,z);
1901                 imageReslice->SetOutputDimensionality(2);
1902                 imageReslice->SetInterpolationModeToLinear();
1903
1904                 img = imageReslice->GetOutput();
1905                 img->Update();
1906                 img->UpdateInformation();
1907
1908 //EED??         wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
1909
1910                 double range[2];
1911                 img->GetScalarRange(range);
1912
1913                 int min = floor (range[0]);
1914                 int max = ceil (range[1]);
1915
1916                 //Lookup Table
1917                 vtkLookupTable *lookup = vtkLookupTable::New();
1918                 lookup->SetNumberOfTableValues(max+1);
1919                 lookup->SetTableRange(range);
1920                 lookup->SetAlphaRange(0, 1);
1921                 lookup->SetValueRange(0, 1);
1922                 lookup->SetSaturationRange(0, 0);
1923                 lookup->SetRampToLinear( );
1924
1925                 //Assign a fake color for the upper image, and set the white as transparent
1926                 int i;
1927                 for(i = min; i <= max; i++)
1928                 {
1929                         if( i >= minVal && i <= maxVal )
1930                         {
1931                                 lookup->SetTableValue(i, 1.0, 0.0, 0.0, 1);
1932                         }
1933                         else if( i >= min && i < minVal )
1934                         {
1935                                 lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1936                         }
1937                         else if( i > maxVal && i < max )
1938                         {
1939                                 lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1940                         }
1941                         else
1942                         {
1943                                 lookup->SetTableValue(i, 1.0, 1.0, 1.0, 0); //transparent
1944                         }
1945                 }
1946
1947                 lookup->Build( );
1948
1949                 vtkImageMapToColors *mapperImage = vtkImageMapToColors::New( );
1950                 mapperImage->SetLookupTable( lookup );
1951                 mapperImage->SetInput( img );
1952                 //mapperImage->SetOutputFormatToRGBA( );
1953
1954                 _thresholdActor->SetInput( mapperImage->GetOutput() );
1955 printf("EED wxContourMainFrame::onThresholdChange \n");
1956                 _thresholdActor->SetPosition( 0,0, z+1 );
1957
1958         }
1959
1960         RefreshInterface();
1961 }
1962
1963 void wxContourMainFrame::onThresholdInterpolation(bool interpolate)
1964 {
1965         if (_thresholdActor!=NULL)
1966         {
1967                 if (interpolate)
1968                 {
1969                         _thresholdActor->InterpolateOn( );
1970                 }
1971
1972                 else
1973                 {
1974                         _thresholdActor->InterpolateOff( );
1975                 }
1976
1977                 RefreshInterface();
1978         }
1979 }
1980
1981 void wxContourMainFrame::onThresholdChangeOpacity (int opacity)
1982 {
1983         if (_actorPresent)
1984         {
1985                 _thresholdActor->SetOpacity(opacity*0.1);
1986         }
1987
1988         RefreshInterface();
1989 }
1990
1991 void wxContourMainFrame::onThresholdRemove()
1992 {
1993         if (_actorPresent)
1994         {
1995                 wxVtkBaseView * baseView = _theViewPanel->getWxVtkBaseView();
1996                 baseView->GetRenderer()->RemoveActor( _thresholdActor );
1997                 _actorPresent = false;
1998         }
1999
2000         RefreshInterface();
2001 }
2002
2003 void wxContourMainFrame::showAxis(bool show)
2004 {
2005         _theViewPanel->SetVisibleAxis(show);
2006         _theViewPanel->Refresh();
2007 }
2008
2009
2010 void wxContourMainFrame::onRigidPressed(){
2011         std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2012         int elementsSelected = currentSelection.size();
2013
2014         if ( elementsSelected >= 1 ){
2015                 //JCP 20-10-08 Undo redo implementation
2016                 saveState();
2017                 //JCP 20-10-08 Undo redo implementation
2018
2019                 std::vector<int> tempVector;
2020                 _instantPanel->getInstant( tempVector );
2021                 Instant instant(&tempVector);
2022
2023                 int i , size=currentSelection.size();
2024                 for ( i=0 ; i<size ; i++ )
2025                 {
2026                         kernelManager->changeContourOfManager(currentSelection[i], &instant);
2027                 } // i
2028         }
2029 }
2030
2031 void wxContourMainFrame::onWidthOfContour(double width){
2032
2033         _theViewPanel->removeSceneContours();
2034         _theViewPanel->SetWidthContour(width);
2035
2036         //_theViewPanel->getSceneManager()->SetWidthContour( width );
2037
2038         RefreshInterface();
2039 }
2040 int wxContourMainFrame::getColorWindow(){
2041         return _theViewPanel->getColorWindow();
2042 }
2043 int wxContourMainFrame::getWindowLevel(){
2044         return _theViewPanel->getWindowLevel();
2045 }
2046
2047 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
2048         _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2049
2050         RefreshInterface();
2051 }
2052
2053 void wxContourMainFrame::onInterpolation(bool interpolate){
2054         _theViewPanel->onInterpolation(interpolate);
2055         RefreshInterface();
2056 }
2057
2058 void wxContourMainFrame::onChangeInstant(std::string name,int actual){
2059         _instantPanel->setConceptValue( name, actual );
2060 }
2061
2062 void wxContourMainFrame::resetAppend(){
2063         kernelManager->resetAppend();
2064
2065 }
2066
2067 void wxContourMainFrame::onSpreadAdd(){
2068         std::vector<double> vecX;
2069         std::vector<double> vecY;
2070         std::vector<double> vecZ;
2071         _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2072
2073         std::vector<int> tempVector;
2074         _instantPanel->getInstant( tempVector );
2075
2076         std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2077
2078         interfMainPanel::getInstance()->appendStringSpread(val);
2079
2080 }
2081
2082 void wxContourMainFrame::onSpreadGo(int type){
2083
2084         //JCP 20-10-08 Undo redo implementation
2085         saveState();
2086         //JCP 20-10-08 Undo redo implementation
2087
2088         wxBusyCursor wait;
2089         std::vector<double> vecCtrlPointX;
2090         std::vector<double> vecCtrlPointY;
2091         std::vector<double> vecCtrlPointZ;
2092         double  minZ,maxZ;
2093         int z;
2094
2095         std::vector<int> tempVector;
2096         _instantPanel->getInstant( tempVector );
2097 //              tempVector[1];
2098
2099         kernelManager->getMaxMinZ(&minZ,&maxZ);
2100 //JSTG_16-07-08_----------------------------------------------------------------
2101         //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2102         kernelManager->CalculeSplinePropagation();
2103
2104         double          totalZ = maxZ-minZ+1;
2105         double          porcent;
2106         wxString        tmpString;
2107 //--------------------------------------------------------------------
2108         for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2109         {
2110                 porcent = 100.0* (z-minZ)/totalZ;
2111                 int numero = (int)(z-minZ+1)/(int)totalZ;
2112                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2113
2114                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2115
2116                 int typeofcontour = 1;
2117                 std::string theName;
2118                 manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2119
2120                 if( manModelContour!=NULL ){
2121                         double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2122                         this->_theViewPanel->getSpacing(spc);
2123                         //Adding the manualContourControler to interface objects structure
2124                         //Adding the manualViewContour to interface objects structure
2125                         //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2126                         _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2127                 } // if addedModel
2128         }
2129         if(z > maxZ){
2130                 porcent = 100.0;
2131                 int numero = (int)(z-minZ+1)/(int)totalZ;
2132                 std::string stringtemp = "  "+kernelManager->intToString(porcent)+"%            "+kernelManager->intToString(numero)+"            "+kernelManager->intToString(z);
2133
2134                 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2135         }// for z
2136         //RefreshInterface();
2137 }
2138
2139 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
2140
2141 }
2142
2143 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
2144         std::vector<int> tempVector;
2145         _instantPanel->getInstant(tempVector);
2146         //Asignation of slide number should be different ex by name
2147         tempVector[1]=slide;
2148         return kernelManager->getOutlinesNameAtInstant(tempVector);
2149 }
2150
2151 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ){
2152         int maxContourGroup     =       0;
2153
2154         ContourExtractData      *contourextractdata = new ContourExtractData();
2155
2156         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2157
2158         std::vector<manualContourModel*> lstManConMod;
2159         std::vector<manualContourModel*> lstManConModTmp;
2160         std::vector<manualContourModel*> lstManConModExp;
2161         std::vector<double> pLstValue;
2162         std::vector<double> pLstValuePosX;
2163         std::vector<double> pLstValuePosY;
2164         std::vector<double> pLstValuePosZ;
2165
2166         int             resultSize;
2167         int             resultGrayRangeCount;
2168         double  resultMin;
2169         double  resultMax;
2170         double  resultAverage;
2171         double  resultStandardeviation;
2172
2173         std::vector<int> tempVector;
2174         _instantPanel->getInstant( tempVector );
2175
2176         vtkImageData *imagedata = _theViewPanel->getImageData();
2177         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2178         int z;
2179         int ii,sizeLstContourThings;
2180
2181
2182         int minZ,maxZ;
2183         double totalZ;
2184         double porcent;
2185         wxString tmpString;
2186
2187
2188
2189         if (selection==0 ) // actual slice
2190         {
2191                 std::vector<int> tempVector;
2192                 _instantPanel->getInstant( tempVector );
2193                 int actualSlice = tempVector[1];
2194                 minZ    = actualSlice;
2195                 maxZ    = actualSlice;
2196         }
2197         else if (selection==2 ) // All slices
2198         {
2199                 minZ    = 0;
2200                 maxZ    = sizeZ-1;
2201         }
2202         else if (selection==1 ) // slice range
2203         {
2204                 minZ    = minimumZ;
2205                 maxZ    = maximumZ;
2206         }
2207
2208
2209         totalZ  = maxZ-minZ+1;
2210         contourextractdata->SetImage( imagedata);
2211
2212 // For each slice..
2213         for ( z=minZ ; z<=maxZ ; z++ )
2214         {
2215
2216                 porcent = 100.0* (z-minZ)/totalZ;
2217                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2218
2219                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2220                 //_staticTextInformation->SetLabel(tmpString);
2221
2222                 //Extraction data from contours of each slice
2223                 contourextractdata->SetZtoBeAnalys( z);
2224
2225                 tempVector[1]=z;
2226                 Instant instant(&tempVector);
2227                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2228                 sizeLstContourThings = lstContourThings.size();
2229
2230                 lstManConMod.clear();
2231                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2232                 {
2233                         ContourThing **contourthing = lstContourThings[ii];
2234                         lstManConMod.push_back( (*contourthing)->getModel() );
2235                 }
2236                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2237
2238
2239                 wxString tempString;
2240                 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2241                 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2242                 //_grid->SetRowLabelValue(z, tempString );
2243 //EED004
2244                 int iContourGroup,sizeContourGroup;
2245                 if (typeContourGroup==3) // contour separete
2246                 {
2247                         sizeContourGroup=lstManConModExp.size();
2248                         if ( maxContourGroup<sizeContourGroup )
2249                         {
2250                                 maxContourGroup=sizeContourGroup;
2251                         }
2252                 } else {  // contour AND OR XOR
2253                         sizeContourGroup=1;
2254                         maxContourGroup=1;
2255                 }
2256
2257                 int tmpIntA;
2258
2259
2260
2261                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2262                         lstManConModTmp.clear();
2263                         if (typeContourGroup==3) // contour separete
2264                         {
2265                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2266                         } else {  // contour AND OR XOR
2267                                 lstManConModTmp = lstManConModExp;
2268                         }
2269
2270                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2271
2272                         pLstValue.clear();
2273                         pLstValuePosX.clear();
2274                         pLstValuePosY.clear();
2275                         pLstValuePosZ.clear();
2276                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2277                                                                                                                 &pLstValuePosX,
2278                                                                                                                 &pLstValuePosY,
2279                                                                                                                 &pLstValuePosZ);
2280                         // Statistics of each slice.
2281                         contourextractdata->Statistics( &pLstValue,
2282                                                                                         minimumZ,
2283                                                                                         maximumZ,
2284                                                                                         &resultGrayRangeCount,
2285                                                                                         &resultSize,
2286                                                                                         &resultMin,
2287                                                                                         &resultMax,
2288                                                                                         &resultAverage,
2289                                                                                         &resultStandardeviation);
2290
2291                         if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1)  )
2292                         {
2293                                 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2294                         }
2295
2296                         tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2297
2298                         tempString.Printf(_T("%d"),resultSize);
2299                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2300
2301                         tempString.Printf(_T("%d"),resultGrayRangeCount);
2302                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2303
2304                         tempString.Printf(_T("%f"),resultMin);
2305                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2306
2307                         tempString.Printf(_T("%f"),resultMax);
2308                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2309
2310                         tempString.Printf(_T("%f"),resultAverage);
2311                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2312
2313                         tempString.Printf(_T("%f"),resultStandardeviation);
2314                         interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2315
2316
2317                 } // for iContourGroup
2318         } // for z
2319
2320         int iTitleGroup;
2321         wxString tmpTitleString;
2322         int tmpIntB;
2323         for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2324         {
2325                 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2326                 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2327                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2328
2329                 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2330                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2331                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2332                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2333                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2334                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2335                 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2336         }
2337
2338         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2339         delete contourextractdata;
2340 }
2341
2342 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){
2343     SaveValuesXYZ( directory , namefile, typeContourGroup );
2344
2345         vtkImageData* mask, *value;
2346         this->getMaskValue(mask, value, typeContourGroup);
2347         this->SaveImageResult( directory , namefile, mask, value);
2348
2349
2350         FILE *pFile=fopen(filename.c_str(),"w+");
2351
2352         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2353
2354         wxString tmpString;
2355         int i,j,maxX,maxY=sizeZ;
2356         maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2357
2358         int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2359         for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2360         {
2361                 //              fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2362                 fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2363         }
2364         fprintf(pFile,"\n" );
2365
2366
2367
2368         for ( j=0; j<maxY ; j++)
2369         {
2370                 fprintf(pFile,"%d\t" , j );
2371                 for (i=0 ; i<maxX ; i++){
2372                         tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2373                         fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2374                 } // for i
2375                 fprintf(pFile,"\n"  );
2376         } // for j
2377
2378         fclose(pFile);
2379 }
2380
2381 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2382 {
2383         wxBusyCursor wait;
2384         ContourExtractData      *contourextractdata = new ContourExtractData();
2385         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2386         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2387
2388         std::vector<manualContourModel*> lstManConMod;
2389         std::vector<manualContourModel*> lstManConModTmp;
2390         std::vector<manualContourModel*> lstManConModExp;
2391         std::vector<double> pLstValue;
2392         std::vector<double> pLstValuePosX;
2393         std::vector<double> pLstValuePosY;
2394         std::vector<double> pLstValuePosZ;
2395
2396         std::vector<int> tempVector;
2397         _instantPanel->getInstant( tempVector );
2398
2399         vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
2400         int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2401         int z;
2402         int ii,sizeLstContourThings;
2403
2404
2405         int minZ,maxZ;
2406         double totalZ;
2407         double porcent;
2408         wxString tmpString;
2409         minZ    = 0;// _mbarrange->GetStart();
2410         maxZ    = sizeZ;//_mbarrange->GetEnd();
2411         totalZ  = maxZ-minZ+1;
2412
2413         contourextractdata->SetImage( imagedata);
2414
2415 // For each slice..
2416         for ( z=0 ; z<sizeZ ; z++)
2417         {
2418
2419                 porcent = 100.0* (z-minZ)/totalZ;
2420
2421                 tmpString.Printf(_T("Saving Values"));
2422                 tmpString.Printf(_T("  %d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2423                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2424                 //_staticTextInformation->SetLabel(tmpString);
2425
2426
2427                 //Extraction data from contours of each slice
2428                 contourextractdata->SetZtoBeAnalys( z);
2429
2430                 tempVector[1]=z;
2431                 Instant instant(&tempVector);
2432                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2433                 sizeLstContourThings = lstContourThings.size();
2434
2435                 lstManConMod.clear();
2436                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2437                 {
2438                         ContourThing **contourthing = lstContourThings[ii];
2439                         lstManConMod.push_back( (*contourthing)->getModel() );
2440                 }
2441                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2442
2443
2444 //EED004
2445
2446                 int iContourGroup,sizeContourGroup;
2447                 if (typeContourGroup==3) // contour separete
2448                 {
2449                         sizeContourGroup=lstManConModExp.size();
2450                 } else {  // contour AND OR XOR
2451                         sizeContourGroup=1;
2452                 }
2453
2454                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2455                         lstManConModTmp.clear();
2456                         if (typeContourGroup==3) // contour separete
2457                         {
2458                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2459                         } else {  // contour AND OR XOR
2460                                 lstManConModTmp = lstManConModExp;
2461                         }
2462
2463                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2464
2465                         pLstValue.clear();
2466                         pLstValuePosX.clear();
2467                         pLstValuePosY.clear();
2468                         pLstValuePosZ.clear();
2469                         contourextractdata->GetValuesInsideCrown(       &pLstValue,
2470                                                                                                                 &pLstValuePosX,
2471                                                                                                                 &pLstValuePosY,
2472                                                                                                                 &pLstValuePosZ);
2473
2474                         std::string temp = directory + "/" + namefile + "-slice";
2475                         temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2476                         temp = temp + ".txt";
2477
2478                         // LG 14/01/09 : using crea
2479                         wxString filename = crea::std2wx(temp);
2480                         /*filename.Printf(_T("%s"),directory.c_str());
2481                         filename.append(_T("\\"));
2482                         filename.append(_T("%s"),namefile.c_str());
2483                         filename.append(_T("-slice"));
2484                         filename.append(_T("%d"),z);
2485                         filename.append(_T("-cont"));
2486                         filename.append(_T("%d"),iContourGroup);
2487                         filename.append(_T(".txt"));*/
2488                         //                      filename.Printf(temp.c_str());
2489
2490
2491
2492                         FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2493                         fprintf(pFile,"value \t x \t y \t z\n"  );
2494                         int iLstValue,sizeLstValue=pLstValue.size();
2495                         for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2496                         {
2497                                 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2498                         }
2499                         fclose(pFile);
2500                 } // for  iContourGroup
2501         } // for z
2502         interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2503         //_staticTextInformation->SetLabel( _T("") );
2504         delete contourextractdata;
2505 }
2506
2507 void wxContourMainFrame::getMaskValue(vtkImageData* mask,vtkImageData* value,int typeContourGroup){
2508         wxBusyCursor wait;
2509         ContourExtractData      *contourextractdata = new ContourExtractData( true );
2510         //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2511         if (typeContourGroup==3)
2512         {
2513                 typeContourGroup=1;
2514         }
2515         contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2516
2517         std::vector<manualContourModel*> lstManConMod;
2518         std::vector<manualContourModel*> lstManConModTmp;
2519         std::vector<manualContourModel*> lstManConModExp;
2520
2521         std::vector<int> tempVector;
2522         _instantPanel->getInstant( tempVector );
2523
2524         vtkImageData *imagedata = _theViewPanel->getImageData();
2525         int sizeZ = _theViewPanel->GetImageDataSizeZ();
2526         int z;
2527         int ii,sizeLstContourThings;
2528
2529
2530         int minZ,maxZ;
2531         double totalZ;
2532         double porcent;
2533
2534         wxString tmpString;
2535
2536         minZ    = 0;// _mbarrange->GetStart();
2537         maxZ    = sizeZ;//_mbarrange->GetEnd();
2538         totalZ  = maxZ-minZ+1;
2539
2540         contourextractdata->SetImage( imagedata);
2541
2542 // For each slice..
2543         for ( z=0 ; z<sizeZ ; z++)
2544         {
2545
2546                 porcent = 100.0* (z-minZ)/totalZ;
2547                 tmpString.Printf(_T("Saving Values"));
2548                 tmpString.Printf(_T("%d %c            %d/%d             %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2549                 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2550
2551                 //Extraction data from contours of each slice
2552                 contourextractdata->SetZtoBeAnalys( z);
2553
2554                 tempVector[1]=z;
2555                 Instant instant(&tempVector);
2556                 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2557                 sizeLstContourThings = lstContourThings.size();
2558
2559                 lstManConMod.clear();
2560                 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2561                 {
2562                         ContourThing **contourthing = lstContourThings[ii];
2563                         lstManConMod.push_back( (*contourthing)->getModel() );
2564                 }
2565                 lstManConModExp =  kernelManager->ExploseEachModel( lstManConMod );
2566
2567
2568                 int iContourGroup,sizeContourGroup;
2569                 if (typeContourGroup==3) // contour separete
2570                 {
2571                         sizeContourGroup=lstManConModExp.size();
2572                 } else {  // contour AND OR XOR
2573                         sizeContourGroup=1;
2574                 }
2575
2576                 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2577                         lstManConModTmp.clear();
2578                         if (typeContourGroup==3) // contour separete
2579                         {
2580                                 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2581                         } else {  // contour AND OR XOR
2582                                 lstManConModTmp = lstManConModExp;
2583                         }
2584
2585                         contourextractdata->SetLstManualContourModel( lstManConModTmp );
2586                         contourextractdata->CalculateImageResult(); // with actual Z
2587
2588                 } // for  iContourGroup
2589         } // for z
2590
2591         value = contourextractdata->GetVtkImageValueResult();
2592         mask = contourextractdata->GetVtkImageMaskResult();
2593         delete contourextractdata;
2594 }
2595
2596 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
2597 {
2598
2599         std::string temp = directory + "/" + namefile + "-Value.mhd";
2600
2601         wxString filename = crea::std2wx(temp);
2602         // LG
2603         //      filename.Printf(_T(temp.c_str()));
2604         //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
2605         /*filename.Printf(_T("%s"),directory.c_str());
2606         filename.append(_T("\\"));
2607         filename.append(_T("%s"),namefile.c_str());
2608         filename.append(_T("-Value.mhd"));*/
2609
2610 // Image Value
2611         vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
2612         writerValueImage->SetInput( value );
2613         writerValueImage->SetFileName( (const char *)filename.mb_str() );
2614         writerValueImage->SetFileDimensionality( 3 );
2615         writerValueImage->Write( );
2616
2617 // Image Mask
2618         //              filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
2619         temp = directory + "/" + namefile + "-Mask.mhd";
2620
2621         // LG 14/01/09 : using crea
2622         filename = crea::std2wx(temp);
2623         //      filename.Printf(_T(temp.c_str()));
2624
2625         /*filename.Printf(_T("%s"),directory.c_str());
2626         filename.append(_T("\\"));
2627         filename.append(_T("%s"),namefile.c_str());
2628         filename.append(_T("-Mask.mhd"));*/
2629
2630         vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
2631         writerMaskImage->SetInput( mask );
2632         writerMaskImage->SetFileName( (const char *)filename.mb_str() );
2633         writerMaskImage->SetFileDimensionality( 3 );
2634         writerMaskImage->Write( );
2635
2636         interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2637
2638 }
2639
2640
2641
2642 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
2643         if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
2644                 _theViewPanel->setActualVertical( value);
2645         }
2646         else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) )     {
2647                 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
2648         }
2649
2650         changeInstant();
2651 }
2652
2653 void wxContourMainFrame::onSnakePressed(){
2654         std::vector<double> vecX;
2655         std::vector<double> vecY;
2656         std::vector<double> vecZ;
2657         _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
2658
2659         if (vecX.size()!=0){
2660                 std::vector<int> tempVector;
2661                 _instantPanel->getInstant( tempVector );
2662                 int i,size=vecZ.size();
2663                 int actualSlice = tempVector[1];
2664                 for ( i=0 ; i<size ; i++ )
2665                 {
2666                         vecZ[i] = actualSlice;
2667                 } // for
2668
2669                 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
2670                 wxPanel* panel = new wxPanel(dialog,-1);
2671                 //              wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2672          new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
2673                 dialog->ShowModal();
2674         } // if
2675
2676 }
2677
2678 void wxContourMainFrame::saveFileWithContoursAutomatique(){
2679         std::string filename = kernelManager->getCurrentFileName();
2680         if(filename.compare("")!=0){
2681                 saveFileWithContours(filename);
2682         }else{
2683                 onSave();
2684         }
2685 }
2686