1 /*# ---------------------------------------------------------------------
3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
9 # This software is governed by the CeCILL-B license under French law and
10 # abiding by the rules of distribution of free software. You can use,
11 # modify and/ or redistribute the software under the terms of the CeCILL-B
12 # license as circulated by CEA, CNRS and INRIA at the following URL
13 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
14 # or in the file LICENSE.txt.
16 # As a counterpart to the access to the source code and rights to copy,
17 # modify and redistribute granted by the license, users are provided only
18 # with a limited warranty and the software's author, the holder of the
19 # economic rights, and the successive licensors have only limited
22 # The fact that you are presently reading this means that you have had
23 # knowledge of the CeCILL-B license and that you accept its terms.
24 # ------------------------------------------------------------------------ */
26 //----------------------------------------------------------------------------------------------------------------
27 // Class definition include
28 //----------------------------------------------------------------------------------------------------------------
29 #include "wxContourMainFrame.h"
33 //----------------------------------------------------------------------------------------------------------------
35 //----------------------------------------------------------------------------------------------------------------
38 #include "NameWrapper.h"
39 #include "wx/artprov.h"
40 #include "ConceptDataWrap.h"
46 //----------------------------------------------------------------------------------------------------------------
47 // Class implementation
48 //----------------------------------------------------------------------------------------------------------------
49 /** @file wxContourMainFrame.cxx */
51 //------------------------------------------------------------------------------------------------------------
52 // Constructors & Destructors
53 //------------------------------------------------------------------------------------------------------------
55 wxContourMainFrame* wxContourMainFrame:: instance = NULL;
56 char wxContourMainFrame::COPY = 'C';
58 wxContourMainFrame :: wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style)
59 //: wxPanel(parent, id, title, pos, size, style)
60 //: wxWindow(parent, id, pos, size, style)
61 : wxPanel(parent, id, pos, size, style)
63 m_mgr.SetManagedWindow(this);
65 _creatingContoursActive = false;
67 // _modelManager = NULL;
69 // _buttonsBar = NULL;
71 // _drawToolsPanel = NULL;
72 // _operationsToolsPanel = NULL;
73 //_autoFormsPanel = NULL;
74 // _standardToolsPanel = NULL;
75 // _editionToolsPanel = NULL;
76 // _listViewPanel = NULL;
77 // _sceneManager = NULL;
78 //_actualInstant = NULL;
79 _numberOfVariablesStatistics= 6+1;
81 _refLineControl = NULL;
84 // _actorPresent = false;
86 // set up default notebook style
87 // m_notebook_style =wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
88 // m_notebook_theme = 0;
89 //wxContour_ActionCommandsID a;
91 _contourextractdata = NULL;
92 _viewMaskImage = NULL;
93 _viewMaskImagePanel = NULL;
94 _viewThresholdImage = NULL;
95 _viewThresholdImagePanel = NULL;
96 _viewColorLayerImagePanel = NULL;
98 _frameShowResultImages = NULL;
101 wxContourMainFrame::wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir)
102 : wxPanel(parent, id, pos, size, style)
104 m_mgr.SetManagedWindow(this);
106 _creatingContoursActive = false;
107 _theViewPanel = NULL;
108 _instantPanel = NULL;
109 _refLineControl = NULL;
110 _refLineModel = NULL;
112 // _actorPresent = false;
113 _viewMaskImage = NULL;
114 _viewMaskImagePanel = NULL;
115 _viewThresholdImage = NULL;
116 _viewThresholdImagePanel = NULL;
117 _viewColorLayerImagePanel = NULL;
118 // set up default notebook style
119 m_notebook_style = wxAUI_NB_TAB_SPLIT | wxAUI_NB_TAB_EXTERNAL_MOVE | wxNO_BORDER;
120 m_notebook_theme = 0;
121 //wxContour_ActionCommandsID a;
122 _numberOfVariablesStatistics= 7;
126 _pannew = interfMainPanel::getInstance(this,datadir+"/data/Icons");//, eventHandler);
127 _performingOperation = new PerformingOperation();
128 if(images.size() > 0)
130 this->setVectImages(images);
132 _contourextractdata = NULL;
135 void wxContourMainFrame::setVectImages(std::vector<vtkImageData*> imgs)
139 std::string str_home(getenv("USERPROFILE"));
140 #elif defined(__GNUC__)
141 std::string str_home(getenv("HOME"));
143 std::string strCreaContourDataTmp = str_home + "/.creaContourDataTemp/";
144 std::vector<std::string> conceptNameVect;
145 std::vector<int> conceptSizeVect;
146 notebook = this->createNotebook();
147 kernelManager = new KernelManagerContour( imgs , _datadir+"/data/" , strCreaContourDataTmp );
148 _instantPanel = new wxInstantChooserPanel( notebook, "Instant Chooser", true, false, "c" );
149 _theViewPanel = new wxContourViewPanel( kernelManager->getSourceImage(), notebook );
150 //-------------------------------------------------------------
151 kernelManager->getConceptsInformation(conceptNameVect, conceptSizeVect);
152 _instantPanel->addConcepts(conceptNameVect, conceptSizeVect);
153 double val = _theViewPanel->getCurrentDeep();
154 _instantPanel->setConceptValue( "Axe Depth", (int)val );
155 //JCP _instantPanel->setConceptValue("time", num de imagenes);
156 ConceptDataWrap * data = _instantPanel->getConceptDataOf( "Axe Depth" );
157 //*******************changeInstant();
158 _theViewPanel->setVerticalConcept( "Axe Depth", data->getMinValue(), data->getMaxValue(), data->getMinShowedValue(), data->getMaxShowedValue(), data->getActualValue() );
159 this->configurePanels( );
163 wxContourMainFrame* wxContourMainFrame :: getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style,std::string datadir )
165 if(instance == NULL){
166 instance = new wxContourMainFrame(parent, id, title, pos, size, images, style,datadir);
171 std::vector<vtkImageData*> wxContourMainFrame ::getVectImages()
173 return kernelManager->getVectImages();
176 wxContourMainFrame* wxContourMainFrame :: getInstance()
181 void wxContourMainFrame :: resetInstance()
186 wxContourMainFrame :: ~wxContourMainFrame()
188 delete _contourextractdata;
191 interfMainPanel::resetInstance();
192 delete kernelManager;
194 //_pannew->Destroy();
200 //El problema al cerrar la aplicacion puede estar asociado
201 //a que wxAUINotebook esta en la aplicacion
202 //principal (wxContourGUIExample)tambien
203 //EED???? delete _theViewPanel;
204 //EED???? delete _instantPanel;
205 //EED???? delete _buttonsBar;
206 //EED???? delete _actualInstant;
207 //EED???? delete _sceneManager;
211 //------------------------------------------------------------------------------------------------------------
212 // Creational and initialization methods using WxAui
213 //------------------------------------------------------------------------------------------------------------
215 wxAuiNotebook * wxContourMainFrame :: createNotebook()
217 wxSize client_size = GetClientSize();
218 wxAuiNotebook* noteBook = new wxAuiNotebook(this, -1, wxPoint(client_size.x, client_size.y), wxSize(430,200), m_notebook_style);
219 wxBitmap page_bmp = wxArtProvider::GetBitmap(wxART_NORMAL_FILE, wxART_OTHER, wxSize(16,16));
224 //------------------------------------------------------------------------------------------------------------
225 // Creational and initialization methods
226 //------------------------------------------------------------------------------------------------------------
227 bool wxContourMainFrame :: configurePanels( )
229 bool configured = _theViewPanel!=NULL;
231 configured &= _theViewPanel!=NULL;
232 if( _theViewPanel!=NULL )
234 notebook->AddPage( _theViewPanel, wxT(" View ") );
239 notebook->AddPage( _instantPanel, wxT("Instant Page") );
242 m_mgr.AddPane(notebook, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
244 SetMinSize(wxSize(300,300));
250 bool wxContourMainFrame::addNewPanel(wxPanel* panel)
252 bool configured = panel!=NULL;
253 configured &= panel!=NULL;
257 notebook->AddPage( panel, wxT(" Viewer "), true );
263 //------------------------------------------------------------------------------------------------------------
264 // Attributes getters and setters
265 //------------------------------------------------------------------------------------------------------------
269 void wxContourMainFrame :: setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel )
271 _instantPanel = theInstantChooserPanel;
274 // void wxContourMainFrame :: setButtonsBar( wxContour_ButtonsBar * theButtonsBar )
276 // _buttonsBar = theButtonsBar;
279 // void wxContourMainFrame :: setGrid( wxContour_Grid * theGridPanel )
281 // _gridPanel = theGridPanel;
284 // void wxContourMainFrame :: setDrawToolsPanel( wxContour_DrawToolsPanel * theDrawToolsPanel )
286 // _drawToolsPanel = theDrawToolsPanel;
289 // void wxContourMainFrame :: setOperationsToolsPanel( wxContour_OperationsToolsPanel * theOperationsToolsPanel )
291 // _operationsToolsPanel = theOperationsToolsPanel;
294 // void wxContourMainFrame :: setAutomaticFormsPanel( wxContour_AutomaticFormsToolsPanel * theAutoFormsPanel )
296 // _autoFormsPanel = theAutoFormsPanel;
299 // void wxContourMainFrame :: setStandardToolsPanel( wxContour_StandardToolsPanel * theStandardToolsPanel )
301 // _standardToolsPanel= theStandardToolsPanel;
304 // void wxContourMainFrame :: setEditionToolsPanel( wxContour_EdtionToolsPanel * theEditionToolsPanel )
306 // _editionToolsPanel = theEditionToolsPanel;
309 // void wxContourMainFrame :: setListViewPanel( wxContour_ListViewPanel * theListViewPanel )
311 // _listViewPanel = theListViewPanel;
316 void wxContourMainFrame::onCreateContourSpline( ){
318 //JCP 20-10-08 Undo redo implementation
320 //JCP 20-10-08 Undo redo implementation
325 void wxContourMainFrame::onCreateContourRectangle( )
327 //JCP 20-10-08 Undo redo implementation
329 //JCP 20-10-08 Undo redo implementation
333 void wxContourMainFrame::onCreateContourCircle( )
335 //JCP 20-10-08 Undo redo implementation
337 //JCP 20-10-08 Undo redo implementation
341 void wxContourMainFrame::onCreateContourLine( )
343 //JCP 20-10-08 Undo redo implementation
345 //JCP 20-10-08 Undo redo implementation
349 // RaC 09-09 --------------------------------------
350 void wxContourMainFrame::onCreateContourPoints( )
352 //JCP 20-10-08 Undo redo implementation
354 //JCP 20-10-08 Undo redo implementation
357 // RaC 09-09 --------------------------------------
359 // RaC 10-09 --------------------------------------
360 void wxContourMainFrame::onCreateContourPolygon( )
362 //JCP 20-10-08 Undo redo implementation
364 //JCP 20-10-08 Undo redo implementation
367 // RaC 10-09 --------------------------------------
369 //------------------------------------------------------------------------------------------------------------
371 void wxContourMainFrame :: onCreateContourBullEye(wxPanel* panel )
373 //Creating the manualBaseModel and including in the model
374 manualBaseModel * manModelContour = factoryManualContourModel(panel );
376 std::vector<int> instantVector;
377 _instantPanel->getInstant( instantVector );
378 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
380 /*std::vector<int> instantVector;
381 _instantPanel->getInstant( instantVector );
383 theName= _modelManager->createOutline( manModelContour, instantVector );*/
384 bool addedModel = theName.compare("") != 0;//??
388 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
389 _theViewPanel->getSpacing(spc);
390 //Adding the manualContourControler to interface objects structure
391 //Adding the manualViewContour to interface objects structure
392 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
393 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , 4) ;
397 void wxContourMainFrame::createContour( int typeContour )
399 //Creating the manualContourModel and including in the model
400 manualBaseModel * manModelContour = kernelManager->factoryManualContourModel(typeContour);
401 std::vector<int> instantVector;
402 _instantPanel->getInstant( instantVector );
404 std::vector<int> tempVector;
405 getInstantVector( tempVector );
406 manModelContour->SetLabel2( std::to_string(tempVector[1]) );
408 std::string theName = kernelManager->createOutline(manModelContour, instantVector);
409 /*std::vector<int> instantVector;
410 _instantPanel->getInstant( instantVector );
412 theName= _modelManager->createOutline( manModelContour, instantVector );*/
413 bool addedModel = theName.compare("") != 0;//??
416 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
417 _theViewPanel->getSpacing(spc);
418 //Adding the manualContourControler to interface objects structure
419 //Adding the manualViewContour to interface objects structure
420 //_sceneManager->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
421 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeContour) ;
425 manualBaseModel * wxContourMainFrame::factoryManualContourModel(wxPanel* panel){
427 manualContourModelBullEye *manModelContourBullEye = new manualContourModelBullEye();
428 manualBaseModel *manModelContour=NULL;
429 manModelContour = manModelContourBullEye;
431 int iCrown,sizeCrowns,iSector,sizeSectors;
432 double radioA,radioB,ang,angDelta ;
433 sizeCrowns = ((PanelBullEyeOptions*)panel)->GetNumberOfCrowns();
434 for ( iCrown=0 ; iCrown<sizeCrowns ; iCrown++ )
436 sizeSectors = ((PanelBullEyeOptions*)panel)->GetNumberOfSections(iCrown);
437 radioB = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown);
438 if (iCrown==sizeCrowns-1)
442 radioA = ((PanelBullEyeOptions*)panel)->GetRadioOfCrown(iCrown+1);
446 for ( iSector=0 ; iSector<sizeSectors ; iSector++ )
448 ang = ((PanelBullEyeOptions*)panel)->GetAngOfCrownSection(iCrown,iSector);
449 angDelta= ((PanelBullEyeOptions*)panel)->GetAngDeltaOfCrownSection(iCrown);
450 manModelContourBullEye->AddSector(radioA,radioB,ang,angDelta);
453 } // if _panelBullEyeOptions
455 return manModelContour;
458 void wxContourMainFrame :: saveState()
460 std::string temp = kernelManager->saveState();
461 saveFileWithContours(temp);
464 void wxContourMainFrame::onDeleteContour()
466 //JCP 20-10-08 Undo redo implementation
468 //JCP 20-10-08 Undo redo implementation
470 std::vector<std::string> lstKeyNameToBeErase;
471 lstKeyNameToBeErase = _theViewPanel->getSceneManager()->getSelectedObjects();
472 deleteContours( lstKeyNameToBeErase );
474 int i,size=_sceneManager->getSelectedObjects().size();
477 std::string keyName = _sceneManager->getSelectedObjects()[i];
478 int ispartofstaticlist = this->_modelManager->IsPartOfStaticList( keyName );
479 if ( ispartofstaticlist>=0 )
481 std::vector<int> tempVector;
482 _instantPanel->getInstant( tempVector );
483 Instant instant(&tempVector);
484 this->_modelManager->ChangeContourOfList(keyName, &instant);
488 std::vector<std::string> lstKeyName;
489 std::vector<std::string> lstKeyNameActualSlice;
490 std::vector<std::string> lstKeyNameToBeErase;
492 lstKeyNameToBeErase = _sceneManager->getSelectedObjects();
493 lstKeyNameActualSlice = _sceneManager->GetlstContoursNameActualSlice();
494 int k,kSize=lstKeyNameToBeErase.size();
495 int j,jSize=lstKeyNameActualSlice.size();
497 for (k=0;k<kSize; k++)
500 for (j=0;j<jSize; j++)
502 if (lstKeyNameToBeErase[k]==lstKeyNameActualSlice[j])
509 lstKeyName.push_back( lstKeyNameToBeErase[k] );
513 deleteContours( lstKeyName );
517 void wxContourMainFrame :: deleteContours( std::vector<std::string> keyNamesVector )
519 int i,size=keyNamesVector.size();
522 deleteContour( keyNamesVector[i] );
526 void wxContourMainFrame :: deleteContour( std::string theKeyName )
529 manualContourModel * cModel;
530 manualViewBaseContour * cViewer;
531 manualContourBaseControler * cControler;
533 ContourWrap_ViewControl *conwrapviewControl = _theViewPanel->getSceneManager()->getContourWrap_ViewControlOf( theKeyName );
534 cControler = conwrapviewControl->getControler();*/
537 bool isedit = _theViewPanel->isEditableCControler(theKeyName);
538 bool ispartofstaticlst = kernelManager->IsPartOfStaticList(theKeyName);
540 if (isedit && ispartofstaticlst)
542 _theViewPanel->removeFromScene(theKeyName);
544 kernelManager->deleteCModel(theKeyName);
545 //_theViewPanel->getSceneManager()->removeFromScene( theKeyName );
546 //cViewer = conwrapviewControl->getViewer();
547 //_theViewPanel->getSceneManager()->removeWrap( theKeyName );
548 //cControler* conwrapviewControl->getControler();
551 // delete cControler;
556 void wxContourMainFrame::onDeleteContoursActSlice()
558 //JCP 20-10-08 Undo redo implementation
560 //JCP 20-10-08 Undo redo implementation
562 std::vector<int> tempVector;
563 getInstantVector( tempVector );
564 deleteContours( getOutlinesName( tempVector[1] ) );
565 // deleteContours( (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() );
568 void wxContourMainFrame::onDeleteAllContours(){
569 //JCP 20-10-08 Undo redo implementation
573 void wxContourMainFrame::deleteAllContours(){
574 //JCP 20-10-08 Undo redo implementation
577 std::vector<int> tempVector;
578 _instantPanel->getInstant( tempVector );
580 //JCP --08-09-2008 When using a diferent interface the _mbarrangeDeleteAll might not be initialize
581 // the values in GetStart and GetEnd will then not be initialize also.
582 // We use instead the values given when initializing the _deletepanel.
584 //int minZ = _mbarrangeDeleteAll->GetStart();
585 //int maxZ = _mbarrangeDeleteAll->GetEnd();
589 maxZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
593 _theViewPanel->getSceneManager()->removeSceneContours( );
594 _theViewPanel->getSceneManager()->removeAllOutlines();
595 kernelManager->removeAllOutlines();
598 if ( (minZ==0) && (maxZ==_mbarrangeDeleteAll->GetMax() ))
600 _theViewPanel->getSceneManager()->removeSceneContours( );
601 _modelManager->removeAllOutlines();
602 _theViewPanel->getSceneManager()->removeAllOutlines();
605 for ( z=minZ ; z<=maxZ ; z++)
608 Instant instant(&tempVector);
609 std::vector<ContourThing**> lstContourThings = this->_modelManager->getOutlinesAtInstant( &instant );
611 sizeLstContourThings = lstContourThings.size();
612 for (ii=0 ; ii<sizeLstContourThings ; ii++)
614 ContourThing **contourthing = lstContourThings[ii];
615 deleteContour( (*contourthing)->getName() );
622 void wxContourMainFrame::setConceptValue( std::string name, int value )
624 _instantPanel->setConceptValue(name, value);
628 ConceptDataWrap* wxContourMainFrame::getLastConceptData()
630 return _instantPanel->getLastConceptData();
634 bool wxContourMainFrame::getIfConceptCheckedAt( std::string name, int pos )
636 return _instantPanel->getIfConceptCheckedAt( name, pos );
641 void wxContourMainFrame::ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ)
644 vtkImageData * value;
645 this->getMaskValue(&mask, &value, typeContourGroup, selection, minZ, maxZ);
647 std::vector<int> nTypeView;
648 nTypeView.push_back(5);
649 nTypeView.push_back(1);
650 nTypeView.push_back(2);
651 nTypeView.push_back(0);
653 if (_frameShowResultImages==NULL)
655 // wxFrame *_frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600), wxDEFAULT_FRAME_STYLE|wxSTAY_ON_TOP);
656 _frameShowResultImages = new wxFrame(this, -1,_T("Result image extracted.."),wxDefaultPosition,wxSize(600,600),
657 wxFRAME_TOOL_WINDOW|wxSYSTEM_MENU | wxCAPTION | wxCLIP_CHILDREN |wxFRAME_FLOAT_ON_PARENT | wxRESIZE_BORDER );
659 wxAuiManager *m_mgr_noteBookViewerResult = new wxAuiManager();
660 m_mgr_noteBookViewerResult->SetManagedWindow(_frameShowResultImages);
662 wxAuiNotebook* noteBookViewerResult = new wxAuiNotebook(_frameShowResultImages, -1, wxPoint(600, 600), wxSize(430,200), m_notebook_style);
663 m_mgr_noteBookViewerResult->AddPane(noteBookViewerResult, wxAuiPaneInfo().Name(wxT("notebook_content")).CenterPane().PaneBorder(false));
665 wxPanel *panelViewer1 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, value,&nTypeView);
666 wxPanel *panelViewer2 = new wxMaracas_N_ViewersWidget(noteBookViewerResult, mask,&nTypeView);
669 noteBookViewerResult->AddPage( panelViewer1, wxT("Image result") );
670 noteBookViewerResult->AddPage( panelViewer2, wxT("Mask result") );
671 m_mgr_noteBookViewerResult->Update();
672 _frameShowResultImages->Show();
673 } // if _frameShowResultImages
679 void wxContourMainFrame::changeInstant()
681 std::vector<int> instantVect;
682 _instantPanel->getInstant( instantVect );
683 int actualSlice = instantVect[1];
684 kernelManager->setInstant(instantVect);
685 // Refresh Mask image
686 if(_viewMaskImage!=NULL)
688 _viewMaskImage->SetZ(actualSlice);
689 if (_viewMaskImagePanel->IsVisible()==true)
691 vtkImageData *mask, *value;
692 getMaskValue(&mask,&value, _contourGroup , 0, -1, -1);
693 _viewMaskImage->onThreshold();
695 } // if _viewMaskImage
696 // Refresh Threshold image
697 if(_viewThresholdImage!=NULL)
699 _viewThresholdImage->SetZ(actualSlice);
700 if (_viewThresholdImagePanel->IsVisible()==true)
702 _viewThresholdImage->onThreshold();
704 } // if _viewThresholdImage
705 updateInstantOutlines();
706 updateInstantImageData();
712 void wxContourMainFrame::updateInstantOutlines()
714 _theViewPanel->removeSceneContours();
715 _theViewPanel->addNameWrapperToScene();
717 //for( int i=0; i<size; i++)
719 // _theViewPanel->getSceneManager()->addToScene(namesWrapping[i]->getKeyName(), true, true, true, false, false );
723 int wxContourMainFrame::getNamesWrappingSize()
725 return kernelManager->getNamesWrappingSize();
728 std::string wxContourMainFrame::getNameWrapping(int i)
730 return kernelManager->getNameWrapping(i);
733 void wxContourMainFrame::updateInstantImageData()
735 std::vector<int> inst;
736 _instantPanel->getInstant(inst);
738 vtkImageData* img = kernelManager->getImageAtInstant(inst);
741 _theViewPanel->changeImage(img);
744 int z = _instantPanel->getConceptDataOf("Axe Depth")->getActualValue();
745 _theViewPanel->setImageSlice(z);
749 void wxContourMainFrame::updateInstantAxes()
754 void wxContourMainFrame::onChangeDeep(int val){
755 _instantPanel->setConceptValue( "Axe Depth", (int)val );
760 void wxContourMainFrame::onCopy(){
761 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
762 std::vector<int> tempVector;
763 _instantPanel->getInstant( tempVector );
764 _performingOperation->reset();
765 _performingOperation->setStartCommand( COPY );
766 _performingOperation->setStartOperationInstantVector( tempVector );
767 _performingOperation->setKeyNamesOperationElems( currentSelection );
770 void wxContourMainFrame::onPaste()
772 char theStartCommand = _performingOperation->getStartCommand();
773 if ( theStartCommand == COPY )
775 //JCP 20-10-08 Undo redo implementation
777 //JCP 20-10-08 Undo redo implementation
778 std::vector<int> tempVector;
779 _instantPanel->getInstant( tempVector );
780 _performingOperation->setEndOperationInstantVector ( tempVector );
781 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
782 int i,size = elems.size();
783 for( i=0; i<size; i++ )
785 createCopyContourOf( elems[i], tempVector, i>0 );
790 void wxContourMainFrame::onUndo()
792 std::string filename;
793 if(kernelManager->onUndoSaveFile(filename)){
794 saveFileWithContours(filename);
796 if(kernelManager->onUndo(filename)){
800 void wxContourMainFrame::onRedo(){
801 std::string filename;
802 if(kernelManager->onRedo(filename)){
807 void wxContourMainFrame :: createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
809 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
810 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
811 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
814 ///AD: 03-09 Copy the object and apply the given transformation
815 void wxContourMainFrame :: createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append )
817 std::string cloneName = kernelManager->createCopyContourOf( anExistingKName, instantNoTouchData );
818 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
820 manualPoint * refPoint1 = _refLineModel->GetManualPoint(0);
821 manualPoint * refPoint2 = _refLineModel->GetManualPoint(1);
823 double pnt1X = refPoint1->GetX();
824 double pnt1Y = refPoint1->GetY();
825 // double pnt1Z = refPoint1->GetZ();
826 double pnt2X = refPoint2->GetX();
827 double pnt2Y = refPoint2->GetY();
828 // double pnt2Z = refPoint2->GetZ();
830 double angle = (atan2(pnt2Y - pnt1Y, pnt2X - pnt1X) * 180 / 3.1415926535897932384626433832795)+90;
831 vtkTransform *t = vtkTransform::New();
835 t->Translate(-pnt1X, -pnt1Y, 0);
839 t->Translate(pnt1X, pnt1Y, 0);
842 int i,size=manualModel->GetSizeLstPoints();
845 manualPoint * mp = manualModel->GetManualPoint(i);
851 t->TransformPoint( vecIn, vecOut );
852 mp->SetPointX( vecOut[0] );
853 mp->SetPointY( vecOut[1] );
854 mp->SetPointZ( vecOut[2] );
857 _theViewPanel->getSceneManager()->createCopyContourOf( anExistingKName, cloneName, manualModel , append );
860 void wxContourMainFrame ::loadState(std::string filename)
863 onLoadContours(filename,false);
866 void wxContourMainFrame::onLoad()
868 std::string fileNameContourROI = GetFileLocation();
869 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
870 if(GetFileLocation().empty())
872 //------------------------------------------------------------------------------------------------------------
873 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
874 #if wxMAJOR_VERSION <= 2
875 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxOPEN );
877 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_OPEN );
879 if (dialog.ShowModal() == wxID_OK)
881 fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
884 onLoadContours(fileNameContourROI,true);
887 void wxContourMainFrame::SetZForAllContours(int pz)
890 std::vector< std::string > lstNameThings;
891 int i,sizeLstNameThings;
892 int ii,sizeLstPoints;
893 lstNameThings = kernelManager->GetLstNameThings();
894 sizeLstNameThings = lstNameThings.size();
895 for (i=0 ; i<sizeLstNameThings ; i++)
897 printf("EED wxContourMainFrame::SetZForAllContours contour=%d \n", i );
898 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
899 sizeLstPoints = manualModel->GetSizeLstPoints();
900 for (ii=0 ; ii<sizeLstPoints ; ii++)
902 manualModel->GetManualPoint(ii)->SetPointZ(-900);
903 }// for ii list of points
904 }// for i list of Things
908 lstNameThings = kernelManager->GetLstNameThingsStatic();
909 sizeLstNameThings = lstNameThings.size();
910 for (i=0 ; i<sizeLstNameThings ; i++)
912 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
913 sizeLstPoints = manualModel->GetSizeLstPoints();
914 for (ii=0 ; ii<sizeLstPoints ; ii++)
916 manualModel->GetManualPoint(ii)->SetPointZ(-900);
917 }// for ii list of points
918 }// for i list of static things
921 void wxContourMainFrame::onLoadContours(std::string fileNameContourROI, bool interactiveInterface)
925 FILE *pFile =fopen(fileNameContourROI.c_str(),"r+");
926 //CMRU 03-09-09- ----------------------------------------------------------------------------------------------
929 //------------------------------------------------------------------------------------------------------------
930 fileNameContourROI.append("data");
931 FILE *pFileData=fopen(fileNameContourROI.c_str(),"r+");
932 if(pFileData != NULL)
934 fscanf(pFileData,"%s",tmpD); // --CreaContour--
935 fscanf(pFileData,"%s",tmpD); // Version
936 fscanf(pFileData,"%s",tmpD); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
938 fscanf(pFileData,"%s",tmpD); // onePixelSize
939 fscanf(pFileData,"%s",tmpD); // #
940 _onePixelSize = atof(tmpD);
941 fscanf(pFileData,"%s",tmpD); // NumberOfContours
942 fscanf(pFileData,"%s",tmpD); // #
944 fscanf(pFile,"%s",tmp); // --CreaContour--
945 fscanf(pFile,"%s",tmp); // Version
946 fscanf(pFile,"%s",tmp); // 1.0.3 || 1.0.2 || 1.0.1 || 1.0.0
947 std::string version(tmp);
949 _tmpReadFileTypeOfTransformation=-1;
950 if (version=="1.0.3")
952 readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
953 openContours(pFile,pFileData,false);
954 openContours(pFile,pFileData,true); //Load StaticContours
956 if (version=="1.0.2")
959 readDimSpc(pFile,interactiveInterface); // DimSpc interactive ON
960 openContours(pFile,pFileData,false);
961 readDimSpc(pFile,false); // DimSpc interactive OFF
962 openContours(pFile,pFileData,true); // Load StaticContours
963 SetZForAllContours(-900);
964 } else if (version=="1.0.1") { //AD:02-06-09
965 openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
966 openContours(pFile,pFileData,true); //Load StaticContours, skips ImageDimensions and ImageSpacing
967 } else if (version=="1.0.0") { //AD:02-06-09
968 openContours(pFile,pFileData,false); //Skips ImageDimensions and ImageSpacing
971 if(pFileData != NULL)
976 _theViewPanel->getSceneManager()->removeSceneContours();
981 void wxContourMainFrame::onImport()
983 std::string filename, filenamecontours;
984 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
985 #if wxMAJOR_VERSION <= 2
986 wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxOPEN );
988 wxFileDialog dialog(NULL, _T("Choose a XML Osirix File"), _T(""), _T(""), _T("*.xml"), wxFD_OPEN );
990 if (dialog.ShowModal() == wxID_OK)
992 filename = dialog.GetPath().mb_str();
993 filenamecontours = kernelManager->parseOsirixFile(filename);
995 if(filenamecontours.compare("") != 0)
997 onLoadContours(filenamecontours,true);
1002 void wxContourMainFrame::onTest()
1004 std::string filename, filenamecontours;
1005 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1006 #if wxMAJOR_VERSION <= 2
1007 wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxOPEN );
1009 wxFileDialog dialog(NULL, _T("Choose a File"), _T(""), _T(""), _T("*.*"), wxFD_OPEN );
1011 if (dialog.ShowModal() == wxID_OK)
1013 filename = dialog.GetPath().mb_str();
1014 std::cout << "This is the filename: " << filename << std::endl;
1019 void wxContourMainFrame::onSave()
1021 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1022 if(GetFileLocation().empty())
1024 //------------------------------------------------------------------------------------------------------------
1025 //EED 2017-09-16 Migration wxWidgets 2.8 to 3.0
1026 #if wxMAJOR_VERSION <= 2
1027 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxSAVE );
1029 wxFileDialog dialog(NULL, _T("Choose a file"), _T(""), _T(""), _T("*.roi"), wxFD_SAVE );
1031 if (dialog.ShowModal() == wxID_OK)
1033 std::string fileNameContourROI = (const char *)(dialog.GetPath().mb_str());
1034 kernelManager->setCurrentFileName(fileNameContourROI);
1035 saveFileWithContours( fileNameContourROI );
1037 } else {//CMRU 03-09-09-----------------------------------------------------------------------------------------------
1038 std::cout<<"Nombre del archivo: "<<GetFileLocation()<<std::endl;
1039 std::string fileNameContourROI = GetFileLocation();
1040 std::cout<<"Nombre del archivo: "<<fileNameContourROI<<std::endl;
1041 kernelManager->setCurrentFileName(fileNameContourROI);
1042 saveFileWithContours( fileNameContourROI);
1044 //------------------------------------------------------------------------------------------------------------
1048 void wxContourMainFrame::saveFileWithContours( std::string filename )
1051 FILE *pFile=fopen(filename.c_str(),"w+");
1053 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1054 filename.append("data");
1055 std::cout<<"Nombre del archivo: "<<filename<<std::endl;
1056 FILE *pFileData=fopen(filename.c_str(),"w+");
1057 //------------------------------------------------------------------------------------------------------------
1059 std::vector< std::string > lstNameThings;
1060 int i,sizeLstNameThings;
1062 fprintf(pFile,"--CreaContour--\n");
1063 fprintf(pFile,"Version %s\n", "1.0.3" );
1065 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1066 fprintf(pFileData,"--CreaContour--\n");
1067 fprintf(pFileData,"Version %s\n", "1.0.3" );
1068 fprintf(pFileData,"OnePixelSize %f\n", _onePixelSize);
1070 //------------------------------------------------------------------------------------------------------------
1072 vtkImageData *image = _images[0];
1075 image->GetDimensions(dimRange);
1077 fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1080 image->GetSpacing(spaRange);
1082 fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1086 lstNameThings = kernelManager->GetLstNameThings();
1087 sizeLstNameThings = lstNameThings.size();
1088 fprintf(pFile,"NumberOfContours %d\n", sizeLstNameThings );
1090 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1091 fprintf(pFileData,"NumberOfContours %d\n", sizeLstNameThings );
1092 //------------------------------------------------------------------------------------------------------------
1101 for (i=0 ; i<sizeLstNameThings ; i++)
1103 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1104 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
1107 // double sizeInPixel = manualModel ->GetPathSize( );
1108 double sizeInPixel = manualModel ->GetPathSize( spc );
1110 double realContourSize = sizeInPixel*_onePixelSize;
1111 manualModel ->SetRealSize(realContourSize);
1112 //------------------------------------------------------------------------------------------------------------
1114 //int size= kernelManager->GetLstNameThings().size();
1116 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1117 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1120 //-- Static Contours
1122 // fprintf(pFile,"ImageDimensions %d %d %d\n", dimRange[0], dimRange[1], dimRange[2] );
1123 // fprintf(pFile,"ImageSpacing %f %f %f\n", spaRange[0], spaRange[1], spaRange[2] );
1125 lstNameThings = kernelManager->GetLstNameThingsStatic();
1126 sizeLstNameThings = lstNameThings.size();
1127 fprintf(pFile,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1129 //CMRU 03-09-09-----------------------------------------------------------------------------------------------
1130 fprintf(pFileData,"NumberOfContoursStatic %d\n", sizeLstNameThings );
1131 //------------------------------------------------------------------------------------------------------------
1133 for (i=0 ; i<sizeLstNameThings ; i++)
1135 kernelManager->SaveThingName( pFile, pFileData, lstNameThings[i] );
1136 _theViewPanel->getSceneManager()->SaveThingName( pFile, lstNameThings[i] );
1144 void wxContourMainFrame::readDimSpc(FILE *pFile, bool interactiveOption)
1148 double imageSpac[3];
1149 vtkImageData *image = _images[0];
1150 image->GetDimensions(imageDim);
1151 image->GetSpacing(imageSpac);
1153 fscanf(pFile,"%s",tmp); // ImageDimensions
1154 fscanf(pFile,"%s",tmp); // X
1155 _tmpReadFileImageDim[0] = atoi(tmp);
1156 fscanf(pFile,"%s",tmp); // Y
1157 _tmpReadFileImageDim[1] = atoi(tmp);
1158 fscanf(pFile,"%s",tmp); // Z
1159 _tmpReadFileImageDim[2] = atoi(tmp);
1161 fscanf(pFile,"%s",tmp); // ImageSpacing
1162 fscanf(pFile,"%s",tmp); // X
1163 _tmpReadFileImageSpac[0] = atof(tmp);
1164 fscanf(pFile,"%s",tmp); // Y
1165 _tmpReadFileImageSpac[1] = atof(tmp);
1166 fscanf(pFile,"%s",tmp); // Z
1167 _tmpReadFileImageSpac[2] = atof(tmp);
1170 if (interactiveOption==true)
1172 //Compare Spacing and Dims in X and Y (Necessary in Z?) - Just for Version 2
1173 if (imageDim[0]!=_tmpReadFileImageDim[0] || imageDim[1]!=_tmpReadFileImageDim[1] || imageSpac[0]!=_tmpReadFileImageSpac[0] || imageSpac[1]!=_tmpReadFileImageSpac[1])
1175 wxDialog* dial = new wxDialog (this,-1,_T("Tools"),wxDefaultPosition, wxSize(460,360));
1176 wxSizer* buttonsSizer = dial->CreateSeparatedButtonSizer(wxOK|wxCANCEL);
1177 wxBoxSizer *dialSizer = new wxBoxSizer(wxVERTICAL);
1179 wxString lstOptOperation[2];
1180 lstOptOperation[0]=_T("By Dimension");
1181 lstOptOperation[1]=_T("By Spacing");
1182 wxRadioBox * radioOpts = new wxRadioBox(dial, -1, _T("Type of Transformation"), wxDefaultPosition, wxSize(270,45), 2 , lstOptOperation, 2, wxRA_SPECIFY_COLS);
1184 dialSizer->Add( new wxStaticText(dial,-1,_T("The image resolution is not compatible with the ")) , 0, wxGROW );
1185 dialSizer->Add( new wxStaticText(dial,-1,_T("selected Roi file. Do you want to tranform it?")) , 0, wxGROW );
1186 dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW );
1187 dialSizer->Add(radioOpts,0,wxGROW);
1188 dialSizer->Add( new wxStaticText(dial,-1,_T(" ")) , 0, wxGROW );
1189 dialSizer->Add(buttonsSizer,0,wxGROW);
1190 dial->SetSizer(dialSizer, true);
1194 int _tmpReadFileTypeOfTransformation = -1;
1195 //EED bool transform = false;
1197 if (dial->GetReturnCode() == wxID_OK)
1199 _tmpReadFileTypeOfTransformation = radioOpts->GetSelection();
1203 } // if interactiveOption
1210 void wxContourMainFrame::openContours( FILE *pFile, FILE *pFileData, bool staticContour )
1215 vtkImageData *image = _images[0];
1218 double imageSpac[3];
1219 image->GetDimensions(imageDim);
1220 image->GetSpacing(imageSpac);
1223 fscanf(pFile,"%s",tmp); // NumberOfContours
1224 fscanf(pFile,"%s",tmp); // ##
1225 int numberOfContours = atoi(tmp);
1227 std::vector<int> instantVector;
1228 int typeContourModel;
1229 manualBaseModel *manModelContour;
1233 if (compatible==true)
1236 for (i=0;i<numberOfContours;i++)
1238 instantVector.clear();
1239 fscanf(pFile,"%s",tmp); // Instant
1241 fscanf(pFile,"%s",tmp); // 1
1242 instantVector.push_back( atoi(tmp) );
1243 fscanf(pFile,"%s",tmp); // 2
1244 instantVector.push_back( atoi(tmp) );
1245 fscanf(pFile,"%s",tmp); // 3
1246 instantVector.push_back( atoi(tmp) );
1247 fscanf(pFile,"%s",tmp); // 4
1248 instantVector.push_back( atoi(tmp) );
1249 fscanf(pFile,"%s",tmp); // 5
1250 instantVector.push_back( atoi(tmp) );
1251 fscanf(pFile,"%s",tmp); // 6
1252 instantVector.push_back( atoi(tmp) );
1255 fscanf(pFile,"%s",tmp); // TypeContourModel
1256 fscanf(pFile,"%s",tmp); // ##
1257 typeContourModel = atoi(tmp);
1259 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
1260 manModelContour->Open(pFile);
1261 if(pFileData != NULL)
1263 manModelContour->OpenData(pFileData);
1266 fscanf(pFile,"%s",tmp); // TypeView
1267 fscanf(pFile,"%s",tmp); // ##
1268 typeView = atoi(tmp);
1270 std::string theName;
1271 theName = kernelManager->createOutline( manModelContour, instantVector );
1272 bool addedModel = theName.compare("") != 0;
1275 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1276 _theViewPanel->getSpacing(spc);
1277 //Adding the manualContourControler to interface objects structure
1278 //Adding the manualViewContour to interface objects structure
1279 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1280 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1283 if (staticContour) //StaticContours (will appear in all slices)
1285 Instant instant(&instantVector);
1286 kernelManager->changeContourOfManager( theName , &instant );
1289 }// for numberOfContours
1292 else if (compatible==false)
1297 for (i=0;i<numberOfContours;i++)
1299 instantVector.clear();
1300 fscanf(pFile,"%s",tmp); // Instant
1302 fscanf(pFile,"%s",tmp); // 1
1303 instantVector.push_back( atoi(tmp) );
1304 fscanf(pFile,"%s",tmp); // 2
1305 instantVector.push_back( atoi(tmp) );
1306 fscanf(pFile,"%s",tmp); // 3
1307 instantVector.push_back( atoi(tmp) );
1308 fscanf(pFile,"%s",tmp); // 4
1309 instantVector.push_back( atoi(tmp) );
1310 fscanf(pFile,"%s",tmp); // 5
1311 instantVector.push_back( atoi(tmp) );
1312 fscanf(pFile,"%s",tmp); // 6
1313 instantVector.push_back( atoi(tmp) );
1315 fscanf(pFile,"%s",tmp); // TypeContourModel
1316 fscanf(pFile,"%s",tmp); // ##
1317 typeContourModel = atoi(tmp);
1319 manModelContour = kernelManager->factoryManualContourModel(typeContourModel);
1320 manModelContour->Open(pFile);
1321 if(pFileData != NULL)
1323 manModelContour->OpenData(pFileData);
1326 if (_tmpReadFileTypeOfTransformation==-1){
1328 } else if (_tmpReadFileTypeOfTransformation==0){
1329 double transX, transY;
1330 transX = (double) imageDim[0]/_tmpReadFileImageDim[0];
1331 transY = (double) imageDim[1]/_tmpReadFileImageDim[1];
1332 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1333 } else if (_tmpReadFileTypeOfTransformation==1) {
1334 double transX, transY;
1335 transX = (double) _tmpReadFileImageSpac[0]/imageDim[0];
1336 transY = (double) _tmpReadFileImageSpac[1]/imageDim[1];
1337 manModelContour->Transform_Ax_Plus_B(transX,0,transY,0);
1340 fscanf(pFile,"%s",tmp); // TypeView
1341 fscanf(pFile,"%s",tmp); // ##
1342 typeView = atoi(tmp);
1344 std::string theName;
1345 theName = kernelManager->createOutline( manModelContour, instantVector );
1346 bool addedModel = theName.compare("") != 0;
1349 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1350 _theViewPanel->getSpacing(spc);
1351 //Adding the manualContourControler to interface objects structure
1352 //Adding the manualViewContour to interface objects structure
1353 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1354 _theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc , typeView) ;
1357 if (staticContour) //StaticContours (will appear in all slices)
1359 Instant instant(&instantVector);
1360 kernelManager->changeContourOfManager( theName , &instant );
1362 }// for numberOfContours
1368 void wxContourMainFrame::RefreshInterface()
1371 _theViewPanel->RefreshInterface();
1372 //wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)this->_theViewPanel->getWxVtkBaseView();
1373 //wxvtk2dbaseview->Refresh();
1376 vtkImageData* wxContourMainFrame::getImageData()
1378 return _theViewPanel->getImageData();
1381 void wxContourMainFrame::onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation)
1383 //JCP 20-10-08 Undo redo implementation
1385 //JCP 20-10-08 Undo redo implementation
1388 int x = _theViewPanel->GetX();
1389 int y = _theViewPanel->GetY();
1390 int z = _theViewPanel->GetZ();
1391 SegmentationOneSliceITK( x,y,z,distance, sigma, alfa, beta, propagation, iterations, inflation);
1395 void wxContourMainFrame::SegmentationOneSliceITK(int x, int y, int z, wxString distanc, wxString sigm, wxString alf, wxString bet, wxString prop, wxString iter, wxString inflation)
1397 int typeofcontour = 1;
1399 vtkImageData *imagedata = getImageData();
1401 //Tipo de pixeles a utilizar internamente en ITK
1402 typedef float InternalPixelType;
1403 const unsigned int Dimension = 2;
1404 typedef itk::Image< InternalPixelType, Dimension > InternalImageType;
1406 //Tipo de pixeles de salida 1
1407 typedef unsigned char OutputPixelType;
1408 typedef itk::Image< OutputPixelType, Dimension > OutputImageType;
1410 //Tipo de pixeles de salida 2
1411 typedef unsigned short OutputPixelType2;
1412 typedef itk::Image< OutputPixelType2, Dimension > OutputImageType2;
1414 //DefiniciÛn del thresholder
1415 typedef itk::BinaryThresholdImageFilter<
1417 OutputImageType > ThresholdingFilterType;
1419 //DefiniciÛn del primer filtro de conversiÛn de pixeles
1420 typedef itk::CastImageFilter<
1421 OutputImageType, OutputImageType2 > CastFilterType;
1423 //DefiniciÛn del segundo tipo de conversiÛn de pixeles
1424 typedef itk::CastImageFilter<
1425 OutputImageType2, InternalImageType > CastFilterType2;
1427 //Tercer tipo de conversiÛn
1428 typedef itk::RescaleIntensityImageFilter<
1430 OutputImageType > CastFilterType3;
1432 //Cuarto tipo de conversiÛn
1433 typedef itk::RescaleIntensityImageFilter<
1435 OutputImageType > CastFilterType4;
1437 ThresholdingFilterType::Pointer thresholder = ThresholdingFilterType::New();
1439 thresholder->SetLowerThreshold( 0.0 );
1440 thresholder->SetUpperThreshold( 128 );
1442 thresholder->SetOutsideValue( 255 );
1443 thresholder->SetInsideValue( 0 );
1445 //DefinciÛn de conexiÛnes entre VTK e ITK y el writer
1446 typedef itk::VTKImageToImageFilter<OutputImageType2> ConnectorType;
1447 typedef itk::ImageToVTKImageFilter<OutputImageType> ConnectorType2;
1448 //EED10JUIN2011 typedef itk::ImageFileWriter< OutputImageType > WriterType;
1450 ConnectorType::Pointer connector= ConnectorType::New();
1451 ConnectorType2::Pointer connector2= ConnectorType2::New();
1454 CastFilterType::Pointer filter=CastFilterType::New();
1455 CastFilterType2::Pointer filter2=CastFilterType2::New();
1457 connector->SetInput( imagedata );
1458 filter2->SetInput(connector->GetOutput());
1460 typedef itk::CurvatureAnisotropicDiffusionImageFilter<
1462 InternalImageType > SmoothingFilterType;
1464 SmoothingFilterType::Pointer smoothing = SmoothingFilterType::New();
1466 typedef itk::GradientMagnitudeRecursiveGaussianImageFilter<
1468 InternalImageType > GradientFilterType;
1470 typedef itk::SigmoidImageFilter<
1472 InternalImageType > SigmoidFilterType;
1474 GradientFilterType::Pointer gradientMagnitude = GradientFilterType::New();
1476 SigmoidFilterType::Pointer sigmoid = SigmoidFilterType::New();
1478 sigmoid->SetOutputMinimum( 0.0 );
1479 sigmoid->SetOutputMaximum( 255.0 );
1482 typedef itk::FastMarchingImageFilter<
1484 InternalImageType > FastMarchingFilterType;
1487 FastMarchingFilterType::Pointer fastMarching = FastMarchingFilterType::New();
1489 printf("EED wxContourMainFrame::SegmentationOneSliceITK Skypping this code. Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1 \n ");
1491 > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - > - Not compiling GeodesicActiveContourLevelSetImageFilter in fedora 17 with ITK 3.20.1
1494 typedef itk::GeodesicActiveContourLevelSetImageFilter< InternalImageType,
1495 InternalImageType > GeodesicActiveContourFilterType;
1496 GeodesicActiveContourFilterType::Pointer geodesicActiveContour =
1497 GeodesicActiveContourFilterType::New();
1499 typedef itk::ZeroCrossingImageFilter<
1501 InternalImageType > ZeroCrossingFilterType;
1502 ZeroCrossingFilterType::Pointer zeroCrossing =
1503 ZeroCrossingFilterType::New();
1505 const double propagationScaling = atof( crea::wx2std(prop).c_str() );
1507 geodesicActiveContour->SetPropagationScaling( propagationScaling );
1508 geodesicActiveContour->SetCurvatureScaling( 1.0 );
1509 geodesicActiveContour->SetAdvectionScaling( 1.0 );
1511 geodesicActiveContour->SetMaximumRMSError( 0.02 );
1512 int it=atoi( crea::wx2std(iter).c_str() );
1513 geodesicActiveContour->SetNumberOfIterations( it );
1515 smoothing->SetInput( filter2->GetOutput() );
1516 gradientMagnitude->SetInput( smoothing->GetOutput() );
1517 sigmoid->SetInput( gradientMagnitude->GetOutput() );
1518 fastMarching->SetInput( sigmoid->GetOutput() );
1519 geodesicActiveContour->SetInput( fastMarching->GetOutput() );
1520 geodesicActiveContour->SetFeatureImage( sigmoid->GetOutput() );
1522 zeroCrossing->SetInput( geodesicActiveContour->GetOutput() );
1523 //thresholder->SetInput( zeroCrossing->GetOutput() );
1524 thresholder->SetInput( geodesicActiveContour->GetOutput() );
1525 connector2->SetInput( thresholder->GetOutput() );
1527 < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < - < -
1533 smoothing->SetTimeStep( 0.125 );
1534 smoothing->SetNumberOfIterations( 5 );
1535 smoothing->SetConductanceParameter( 9.0 );
1538 const double sigma = atof( crea::wx2std(sigm).c_str() );
1539 gradientMagnitude->SetSigma( sigma );
1541 const double alpha = atof( crea::wx2std(alf).c_str() );
1542 const double beta = atof( crea::wx2std(bet).c_str() );
1544 sigmoid->SetAlpha( alpha );
1545 sigmoid->SetBeta( beta );
1547 typedef FastMarchingFilterType::NodeContainer NodeContainer;
1548 typedef FastMarchingFilterType::NodeType NodeType;
1550 NodeContainer::Pointer seeds = NodeContainer::New();
1552 InternalImageType::IndexType seedPosition;
1553 seedPosition[0] = x;
1554 seedPosition[1] = y;
1556 const double initialDistance = atof( crea::wx2std(distanc).c_str() );
1560 const double seedValue = - initialDistance;
1562 node.SetValue( seedValue );
1563 node.SetIndex( seedPosition );
1565 seeds->Initialize();
1566 seeds->InsertElement( 0, node );
1568 fastMarching->SetTrialPoints( seeds );
1570 fastMarching->SetSpeedConstant( 1.0 );
1572 fastMarching->SetOutputSize(
1573 connector->GetOutput()->GetBufferedRegion().GetSize() );
1575 fastMarching->SetStoppingValue( 800 );
1579 connector2->Update();
1580 vtkImageData *idata = connector2->GetOutput();
1582 vtkMarchingContourFilter* cntVTK = vtkMarchingContourFilter::New( );
1584 cntVTK->SetNumberOfContours( 1 );
1585 cntVTK->SetValue( 0, 255 );
1586 //EED 2017-01-01 Migration VTK7
1587 #if VTK_MAJOR_VERSION <= 5
1588 cntVTK->SetInput( idata );
1590 cntVTK->UpdateInformation();
1592 cntVTK->SetInputData( idata );
1595 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1597 //EED 2017-01-01 Migration VTK7
1598 #if VTK_MAJOR_VERSION <= 5
1599 cpd->SetInput( cntVTK->GetOutput( ) );
1601 cpd->UpdateInformation();
1603 cpd->SetInputData( cntVTK->GetOutput( ) );
1607 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1608 conn->SetExtractionModeToLargestRegion( );
1609 //EED 2017-01-01 Migration VTK7
1610 #if VTK_MAJOR_VERSION <= 5
1611 conn->SetInput( cpd->GetOutput( ) );
1613 conn->UpdateInformation();
1615 conn->SetInputData( cpd->GetOutput( ) );
1619 vtkStripper* vtkstripper = vtkStripper::New( );
1621 //EED 2017-01-01 Migration VTK7
1622 #if VTK_MAJOR_VERSION <= 5
1623 vtkstripper->SetInput( conn->GetOutput() );
1624 vtkstripper->Update();
1625 vtkstripper->UpdateInformation();
1627 vtkstripper->SetInputData( conn->GetOutput() );
1631 vtkPolyData* polyDataResult = cntVTK->GetOutput();
1632 //std::cout<<"Points "<<polyDataResult->GetNumberOfPoints()<<std::endl;
1634 //EED 2017-01-01 Migration VTK7
1635 #if VTK_MAJOR_VERSION <= 5
1636 polyDataResult->Update( );
1637 polyDataResult->UpdateInformation();
1645 myfile.open ("C:/Creatis/example.txt");
1647 polyDataResult->Print(myfile);
1648 myfile << "-------------------------------------\n";
1649 polyDataResult->GetLines()->Print(myfile);
1657 //--Calculating control points
1659 std::vector<double> vecX;
1660 std::vector<double> vecY;
1661 std::vector<double> vecXo;
1662 std::vector<double> vecYo;
1663 std::vector<double>::iterator vecXoi;
1664 std::vector<double>::iterator vecYoi;
1665 std::vector<double> vecZ;
1667 std::vector<double> vecCtrlPointX;
1668 std::vector<double> vecCtrlPointY;
1669 std::vector<double> vecCtrlPointZ;
1675 int ii,size=polyDataResult->GetNumberOfPoints();
1677 myfile.open ("C:/Creatis/example2.txt");
1679 size=polyDataResult->GetNumberOfPoints();
1680 for (ii=0;ii<size;ii++)
1687 p = polyDataResult->GetPoint(ii);
1690 /*if(fabs(yAct-y)>20)
1692 if((xAct-x)>1 || (xAct-x)<-1)
1694 vecX.push_back( p[0] );
1695 vecY.push_back( p[1] );
1696 myfile <<p[0]<<","<<p[1]<<"\n";
1697 std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1698 std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1699 std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1700 vecZ.push_back( 900 );
1706 vecXo.push_back(p[0]);
1707 vecYo.push_back(p[1]);
1711 else*/ if(fabs(xAct-x)>11)
1713 vecXo.push_back(p[0]);
1714 vecYo.push_back(p[1]);
1716 vecX.push_back( p[0] );
1717 myfile <<p[0]<<","<<p[1]<<"\n";
1718 //std::cout<<" x Anterior "<<xAct<<" x actual "<<x<<std::endl;
1719 //std::cout<<" y Anterior "<<yAct<<" y actual "<<y<<std::endl;
1720 //std::cout<<" x "<<p[0]<<" y "<<p[1]<<std::endl;
1721 vecY.push_back( p[1] );
1723 vecZ.push_back( -900 );
1731 while(!vecXo.empty())
1733 vecX.push_back(vecXo.back());
1734 //std::cout<<" x Siguiente "<<vecXo.back();
1737 vecZ.push_back( -900 );
1739 while(!vecYo.empty())
1741 vecY.push_back(vecYo.back());
1746 /*for(int l=0;l<vecX.size();l++)
1750 vecXo.push_back(p[0]);
1751 vecYo.push_back(p[1]);
1762 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
1764 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
1768 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1770 else if (method==1){
1771 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1773 else if (method==2){
1774 extractcontrolpoints2d->SetSamplingControlPoints( 15 );
1775 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
1777 //--Adding contour to the system
1779 std::vector<int> actualInstantVector;
1780 _instantPanel->getInstant( actualInstantVector );
1781 actualInstantVector[1]=z;
1783 int j,sizeCtrPt = vecCtrlPointX.size();
1785 manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
1786 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
1788 for (j=0 ; j<sizeCtrPt ; j++)
1790 manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
1792 std::string theName;
1793 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
1794 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
1795 bool addedModel = theName.compare("") != 0;
1798 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
1799 _theViewPanel->getSpacing(spc);
1800 //Adding the manualContourControler to interface objects structure
1801 //Adding the manualViewContour to interface objects structure
1802 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
1803 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
1804 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
1811 WriterType::Pointer writer = WriterType::New();
1812 CastFilterType3::Pointer caster = CastFilterType3::New();
1814 caster->SetInput( gradientMagnitude->GetOutput() );
1815 writer->SetInput( caster->GetOutput() );
1816 writer->SetFileName("Gradient Magnitude.png");
1817 caster->SetOutputMinimum( 0 );
1818 caster->SetOutputMaximum( 255 );
1821 CastFilterType3::Pointer caster2 = CastFilterType3::New();
1822 WriterType::Pointer writer2 = WriterType::New();
1824 caster2->SetInput( sigmoid->GetOutput() );
1825 writer2->SetInput( caster2->GetOutput() );
1826 writer2->SetFileName("Sigmoid.png");
1827 caster2->SetOutputMinimum( 0 );
1828 caster2->SetOutputMaximum( 255 );
1831 CastFilterType3::Pointer caster3 = CastFilterType3::New();
1832 WriterType::Pointer writer3 = WriterType::New();
1834 caster3->SetInput( fastMarching->GetOutput() );
1835 writer3->SetInput( caster3->GetOutput() );
1836 writer3->SetFileName("FastMarching.bmp");
1837 caster3->SetOutputMinimum( 0 );
1838 caster3->SetOutputMaximum( 255 );
1841 CastFilterType3::Pointer caster4 = CastFilterType3::New();
1842 WriterType::Pointer writer4 = WriterType::New();
1844 caster4->SetInput( geodesicActiveContour->GetOutput() );
1845 writer4->SetInput( caster4->GetOutput() );
1846 writer4->SetFileName("GeodesicActiveContour.png");
1847 caster4->SetOutputMinimum( 0 );
1848 caster4->SetOutputMaximum( 255 );
1851 CastFilterType3::Pointer caster5 = CastFilterType3::New();
1852 WriterType::Pointer writer5 = WriterType::New();
1854 caster5->SetInput( zeroCrossing->GetOutput() );
1855 writer5->SetInput( caster5->GetOutput() );
1856 writer5->SetFileName("ZeroCrossing.bmp");
1857 caster5->SetOutputMinimum( 0 );
1858 caster5->SetOutputMaximum( 255 );
1862 catch( itk::ExceptionObject & excep )
1864 std::cerr << "Exception caught !" << std::endl;
1865 std::cerr << excep << std::endl;
1869 void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
1871 //JCP 20-10-08 Undo redo implementation
1873 //JCP 20-10-08 Undo redo implementation
1876 int x = _theViewPanel->GetX();
1877 int y = _theViewPanel->GetY();
1878 int z = _theViewPanel->GetZ();
1879 SegmentationOneSlice( x,y,z,isovalue, sampling, method );
1884 void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
1887 printf("EED wxContourMainFrame::SegmentationOneSlice Start=%d %d\n",sampling,method );
1888 printf("EED wxContourMainFrame::SegmentationOneSlice %d %d %d \n",x,y,z );
1890 int typeofcontour = 1;
1891 //--Extracting Contour
1892 vtkImageData *imagedata = getImageData();
1894 vtkImageReslice *imageReslice = vtkImageReslice::New();
1897 imagedata->GetSpacing(spc);
1902 //EED 2017-01-01 Migration VTK7
1903 #if VTK_MAJOR_VERSION <= 5
1904 imageReslice->SetInput( imagedata );
1906 imageReslice->SetInputData( imagedata );
1908 imageReslice->SetInformationInput(imagedata);
1909 imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
1910 imageReslice->SetResliceAxesOrigin(0,0,z*spc[2]);
1911 imageReslice->SetOutputDimensionality(2);
1912 imageReslice->SetInterpolationModeToLinear();
1914 //EED 2017-01-01 Migration VTK7
1915 #if VTK_MAJOR_VERSION <= 5
1918 imageReslice->Update();
1921 imagedata = imageReslice->GetOutput();
1922 //EED 2017-01-01 Migration VTK7
1923 #if VTK_MAJOR_VERSION <= 5
1924 imagedata->Update();
1925 imagedata->UpdateInformation();
1930 vtkContourFilter* cntVTK = vtkContourFilter::New( );
1931 //EED 2017-01-01 Migration VTK7
1932 #if VTK_MAJOR_VERSION <= 5
1933 cntVTK->SetInput( imagedata );
1935 cntVTK->SetInputData( imagedata );
1938 cntVTK->SetNumberOfContours( 1 );
1939 //cntVTK->SetValue( 0, vmin );
1940 // cntVTK->SetValue( 0, (range[1]*thr/100) );
1941 cntVTK->SetValue( 1, isovalue );
1942 // cntVTK->SetValue( 1, vmax );
1944 cntVTK->UpdateInformation();
1946 vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
1947 //EED 2017-01-01 Migration VTK7
1948 #if VTK_MAJOR_VERSION <= 5
1949 cpd->SetInput( cntVTK->GetOutput( ) );
1951 cpd->SetInputData( cntVTK->GetOutput( ) );
1953 cpd->ConvertLinesToPointsOff( );
1955 cpd->UpdateInformation();
1957 vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
1959 // conn->SetExtractionModeToPointSeededRegions();
1960 // conn->SetExtractionModeToCellSeededRegions();
1961 // conn->SetExtractionModeToSpecifiedRegions();
1962 // conn->SetExtractionModeToLargestRegion();
1963 // conn->SetExtractionModeToAllRegions();
1965 conn->SetExtractionModeToClosestPointRegion();
1967 //conn->SetMaxRecursionDepth( 3000 );
1969 //EED 2017-01-01 Migration VTK7
1970 #if VTK_MAJOR_VERSION <= 5
1971 conn->SetInput( cpd->GetOutput( ) );
1973 conn->SetInputData( cpd->GetOutput( ) );
1976 conn->SetClosestPoint( x, y, 0 );
1978 conn->UpdateInformation();
1980 vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
1981 //EED 2017-01-01 Migration VTK7
1982 #if VTK_MAJOR_VERSION <= 5
1983 cpd2->SetInput( conn->GetOutput( ) );
1985 cpd2->SetInputData( conn->GetOutput( ) );
1988 cpd2->UpdateInformation();
1990 vtkStripper* vtkstripper = vtkStripper::New( );
1991 vtkstripper->SetJoinContiguousSegments(true);
1992 vtkstripper->SetMaximumLength(20000);
1993 //EED 2017-01-01 Migration VTK7
1994 #if VTK_MAJOR_VERSION <= 5
1995 vtkstripper->SetInput( cpd2->GetOutput() );
1997 vtkstripper->SetInputData( cpd2->GetOutput() );
1998 // vtkstripper->SetInputData( cntVTK->GetOutput() );
2001 vtkstripper->Update();
2002 vtkstripper->UpdateInformation();
2005 vtkPolyData* polyDataResult = vtkstripper->GetOutput();
2007 //EED 2017-01-01 Migration VTK7
2008 #if VTK_MAJOR_VERSION <= 5
2009 polyDataResult->Update( );
2010 polyDataResult->UpdateInformation();
2017 myfile.open ("c:/temp/example.txt");
2019 polyDataResult->Print(myfile);
2020 myfile << "-------------------------------------\n";
2021 polyDataResult->GetLines()->Print(myfile);
2029 //--Calculating control points
2030 std::vector<double> vecX;
2031 std::vector<double> vecY;
2032 std::vector<double> vecZ;
2033 std::vector<double> vecCtrlPointX;
2034 std::vector<double> vecCtrlPointY;
2035 std::vector<double> vecCtrlPointZ;
2037 printf("EED wxContourMainFrame::SegmentationOneSlice GetNumberOfLines=%d \n",polyDataResult->GetNumberOfLines() );
2039 int numberOfPointsInCell;
2040 int numberOfcells=polyDataResult->GetNumberOfCells();
2041 for (int jj=0; jj<numberOfcells ; jj++)
2043 vtkCell* vtkcell = polyDataResult->GetCell( jj );
2044 numberOfPointsInCell=vtkcell->GetNumberOfPoints();
2045 printf("EED wxContourMainFrame::SegmentationOneSlice cell=%d points=%d \n",jj,numberOfPointsInCell );
2048 printf("EED wxContourMainFrame::SegmentationOneSlice PrintSelf \n");
2050 polyDataResult->PrintSelf( std::cout, vtkIndent(0) );
2053 if (polyDataResult->GetNumberOfCells()>0)
2056 printf("EED wxContourMainFrame::SegmentationOneSlice A \n");
2057 vtkCell* vtkcell = polyDataResult->GetCell( 0 );
2058 printf("EED wxContourMainFrame::SegmentationOneSlice B \n");
2059 // int ii,size=polyDataResult->GetNumberOfPoints();
2060 int ii,size=vtkcell->GetNumberOfPoints();
2061 printf("EED wxContourMainFrame::SegmentationOneSlice C \n");
2063 for (ii=0;ii<size;ii++)
2065 // id = polyDataResult->GetLines()->GetData()->GetValue(ii);
2066 // p = polyDataResult->GetPoint(id);
2067 p = vtkcell->GetPoints()->GetPoint(ii);
2069 printf("EED wxContourMainFrame::SegmentationOneSlice (%d) id=%d px=%f py=%f\n",ii,id, p[0],p[1]);
2072 vecX.push_back( p[0] );
2073 vecY.push_back( p[1] );
2075 vecZ.push_back( -900 );
2076 // vecZ.push_back( p[2] );
2079 ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
2080 extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
2083 /*if (methodRadiobox->GetSelection()==0){
2084 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2086 if (methodRadiobox->GetSelection()==1){
2087 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2089 if (methodRadiobox->GetSelection()==2){
2090 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
2091 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2096 extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2097 } else if (method==1){
2098 extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2099 } else if (method==2){
2100 extractcontrolpoints2d->SetSamplingControlPoints( sampling );
2101 extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
2104 //--Adding contour to the system
2105 std::vector<int> actualInstantVector;
2106 _instantPanel->getInstant( actualInstantVector );
2107 actualInstantVector[1]=z;
2109 int j,sizeCtrPt = vecCtrlPointX.size();
2110 manualBaseModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
2111 manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 *2 );
2112 manModelContour->SetLabel2( std::to_string(z) );
2115 for (j=0 ; j<sizeCtrPt ; j++)
2117 manModelContour->AddPoint( vecCtrlPointX[j] / spc[0], vecCtrlPointY[j] / spc[1], vecCtrlPointZ[j] );
2119 std::string theName;
2120 //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
2121 theName = kernelManager->createOutline( manModelContour, actualInstantVector );
2122 bool addedModel = theName.compare("") != 0;
2125 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2126 _theViewPanel->getSpacing(spc);
2127 //Adding the manualContourControler to interface objects structure
2128 //Adding the manualViewContour to interface objects structure
2129 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2130 _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
2131 //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
2134 } // if NumberOfCells > 0
2136 printf("EED wxContourMainFrame::SegmentationOneSlice End\n");
2139 int wxContourMainFrame::GetImageDataSizeZ()
2141 return _theViewPanel->GetImageDataSizeZ();
2144 void wxContourMainFrame::GetImageDataRange(double *range)
2146 _theViewPanel->GetImageDataRange(range);
2149 void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method)
2151 //JCP 20-10-08 Undo redo implementation
2153 //JCP 20-10-08 Undo redo implementation
2156 int x = _theViewPanel->GetX();
2157 int y = _theViewPanel->GetY();
2161 double totalZ = maxZ-minZ+1;
2162 for( z=minZ ; z<=maxZ ; z++ )
2164 porcent = 100.0* (z-minZ)/totalZ;
2165 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
2166 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
2167 //_staticTextSegmentation->SetLabel(tmpString);
2168 SegmentationOneSlice( x,y,z,isovalue, sampling,method );
2170 interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T(" "));
2175 //Creates a reference line to be used as the axis of the mirroring
2176 void wxContourMainFrame::referenceLine()
2178 if (_refLineControl==NULL)
2183 vtkImageData *vtkimagedata = _theViewPanel->getImageData();
2184 vtkimagedata->GetSpacing(spc);
2186 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2188 _refLineControl = new manualLineControler();
2189 _refLineModel = new manualContourModelLine();
2190 _refLineView = new manualViewLine();
2191 _refLineView->SetModel( _refLineModel );
2192 _refLineView->SetWxVtkBaseView( viewer2D );
2193 _refLineView->SetRange( 2 );
2194 _refLineView->SetZ( 1200 );
2196 _refLineView->SetSpacing(spc);
2198 _refLineView->SetColorNormalContour(0, 0, 1);
2199 _refLineView->SetColorEditContour(0, 0.5, 0.5);
2200 _refLineView->SetWidthLine(4);
2202 _refLineControl->SetModelView( _refLineModel , _refLineView );
2203 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2204 style->AddInteractorStyleMaracas( _refLineControl );
2205 _refLineModel->SetCloseContour(false);
2206 _refLineControl->CreateNewManualContour();
2208 //AD: Inicializar el mirroring con una linea ya pintada
2210 double z = _refLineControl->GetZ();
2213 image->GetDimensions(imageDim);
2214 double x = (double) imageDim[0]/2;
2215 double y1 = (double) (imageDim[1]/2)+15;
2216 double y2 = (double) (imageDim[1]/2)-15;
2218 _refLineControl->AddPoint(x,y1,z);
2219 _refLineControl->AddPoint(x,y2,z);
2220 _refLineControl->SetCompleteCreation(true);
2222 _refLineModel->AddPoint(x,y1,z);
2223 _refLineModel->AddPoint(x,y2,z);
2224 _refLineModel->UpdateSpline();
2226 _refLineView->UpdateViewPoint(0);
2227 _refLineView->UpdateViewPoint(1);
2230 _refLineControl->SetActive(true);
2231 _refLineView->RefreshContour();
2235 //Hides the referenceLine
2236 void wxContourMainFrame::refLineHide()
2238 if (_refLineControl!=NULL)
2240 if (_refLineControl->GetActive())
2242 _refLineView->RemoveCompleteContourActor();
2243 _refLineControl->SetEditable(false);
2244 _refLineControl->SetActive(false);
2251 //Shows the referenceLine
2252 void wxContourMainFrame::refLineShow()
2254 if (_refLineControl!=NULL)
2256 if (_refLineControl->GetActive()==false)
2258 wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
2260 _refLineView->SetModel( _refLineModel );
2261 _refLineView->SetWxVtkBaseView( viewer2D );
2262 _refLineView->SetRange( 2 );
2263 _refLineView->SetZ( 1200 );
2265 _refLineControl->SetModelView( _refLineModel , _refLineView );
2266 vtkInteractorStyleBaseView* style = (vtkInteractorStyleBaseView*)viewer2D->GetInteractorStyleBaseView();
2267 style->AddInteractorStyleMaracas( _refLineControl );
2268 _refLineControl->CreateNewManualContour();
2269 _refLineControl->SetActive(true);
2270 _refLineView->RefreshContour();
2277 void wxContourMainFrame::refLineChangeWidth(int width)
2279 _refLineView->SetWidthLine(width);
2280 _refLineView->RefreshContour();
2286 void wxContourMainFrame::onMirror()
2289 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2290 std::vector<std::string> filterCurrentSelection;
2292 std::vector<int> tempVector;
2293 _instantPanel->getInstant( tempVector );
2294 _performingOperation->reset();
2295 _performingOperation->setStartCommand( COPY );
2296 _performingOperation->setStartOperationInstantVector( tempVector );
2297 _performingOperation->setKeyNamesOperationElems( currentSelection );
2299 char theStartCommand = _performingOperation->getStartCommand();
2300 if ( theStartCommand == COPY )
2302 //JCP 20-10-08 Undo redo implementation
2304 //JCP 20-10-08 Undo redo implementation
2305 std::vector<int> tempVector;
2306 _instantPanel->getInstant( tempVector );
2307 _performingOperation->setEndOperationInstantVector ( tempVector );
2308 std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
2309 int i,size = elems.size();
2310 for( i=0; i<size; i++ )
2312 createMirrorContourOf( elems[i], tempVector, i>0 );
2316 //deleteContour( _refName );
2321 void wxContourMainFrame::showAxis(bool show)
2323 _theViewPanel->SetVisibleAxis(show);
2324 _theViewPanel->Refresh();
2328 void wxContourMainFrame::onRigidPressed(){
2329 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
2330 int elementsSelected = currentSelection.size();
2332 if ( elementsSelected >= 1 ){
2333 //JCP 20-10-08 Undo redo implementation
2335 //JCP 20-10-08 Undo redo implementation
2337 std::vector<int> tempVector;
2338 _instantPanel->getInstant( tempVector );
2339 Instant instant(&tempVector);
2341 int i , size=currentSelection.size();
2342 for ( i=0 ; i<size ; i++ )
2344 kernelManager->changeContourOfManager(currentSelection[i], &instant);
2349 void wxContourMainFrame::onWidthOfContour(double width){
2351 _theViewPanel->removeSceneContours();
2352 _theViewPanel->SetWidthContour(width);
2354 //_theViewPanel->getSceneManager()->SetWidthContour( width );
2359 int wxContourMainFrame::getColorWindow()
2363 vtkImageData * img = getImageData();
2364 img->GetScalarRange(range);
2366 std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2368 return (int)range[1];
2370 return _theViewPanel->getColorWindow();
2373 int wxContourMainFrame::getWindowLevel()
2377 vtkImageData * img = getImageData();
2378 img->GetScalarRange(range);
2380 std::cout<<"Val 1: "<<range[0]<<" Val 2: "<<range[1]<<std::endl;
2382 return (int)range[1];
2384 return _theViewPanel->getWindowLevel();
2387 void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel)
2389 _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
2394 void wxContourMainFrame::onInterpolation(bool interpolate)
2396 _theViewPanel->onInterpolation(interpolate);
2400 void wxContourMainFrame::onBeforeAfterContour(bool before,bool after)
2402 _theViewPanel->onBeforeAfterContour(before,after);
2406 void wxContourMainFrame::onJumpSlice(int step, int shift)
2408 std::vector<int> tempVector;
2409 _instantPanel->getInstant( tempVector );
2411 int pos = tempVector[1];
2412 int maxZ = interfMainPanel::getInstance()->GetImageDataSizeZ();
2413 pos=(pos/ss)*ss+step+shift;
2414 if ((pos>=0) && (pos<maxZ))
2417 _instantPanel->setInstant( tempVector );
2422 void wxContourMainFrame::onShowTextContour(bool show)
2424 _theViewPanel->onShowTextContour(show);
2428 void wxContourMainFrame::onChangeInstant(std::string name,int actual)
2430 _instantPanel->setConceptValue( name, actual );
2433 void wxContourMainFrame::resetAppend()
2435 kernelManager->resetAppend();
2438 void wxContourMainFrame::onSpreadAdd()
2440 std::vector<double> vecX;
2441 std::vector<double> vecY;
2442 std::vector<double> vecZ;
2443 _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
2444 std::vector<int> tempVector;
2445 _instantPanel->getInstant( tempVector );
2446 std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2447 interfMainPanel::getInstance()->appendStringSpread(val);
2451 void wxContourMainFrame::onSpreadAddAll()
2454 std::vector<int> tempVector;
2455 _instantPanel->getInstant( tempVector );
2458 maxZ = interfMainPanel::getInstance()->GetImageDataSizeZ();
2460 int sizeLstContourThings;
2461 for ( z=minZ ; z<=maxZ ; z++ )
2464 Instant instant(&tempVector);
2465 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2466 sizeLstContourThings = lstContourThings.size();
2467 if (sizeLstContourThings>=1)
2469 std::vector<double> vecX;
2470 std::vector<double> vecY;
2471 std::vector<double> vecZ;
2472 ContourThing **contourthing = lstContourThings[0];
2473 manualBaseModel *cModel = (*contourthing)->getModel();
2474 int i,size = cModel->GetNumberOfPointsSpline();
2476 for (i=0; i<size; i++)
2478 cModel->GetSpline_i_Point(i, &x, &y, &z);
2483 std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
2484 interfMainPanel::getInstance()->appendStringSpread(val);
2485 }// if sizeLstContourThings
2490 void wxContourMainFrame::onSpreadGo(int type)
2492 //JCP 20-10-08 Undo redo implementation
2494 //JCP 20-10-08 Undo redo implementation
2496 std::vector<double> vecCtrlPointX;
2497 std::vector<double> vecCtrlPointY;
2498 std::vector<double> vecCtrlPointZ;
2502 std::vector<int> tempVector;
2503 _instantPanel->getInstant( tempVector );
2506 kernelManager->getMaxMinZ(&minZ,&maxZ);
2507 //JSTG_16-07-08_----------------------------------------------------------------
2508 //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
2509 kernelManager->CalculeSplinePropagation();
2511 double totalZ = maxZ-minZ+1;
2514 //--------------------------------------------------------------------
2515 for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
2517 porcent = 100.0* (z-minZ)/totalZ;
2518 int numero = (int)(z-minZ+1)/(int)totalZ;
2519 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2521 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2523 int typeofcontour = 1;
2524 std::string theName;
2525 manualBaseModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
2527 if( manModelContour!=NULL ){
2528 double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
2529 this->_theViewPanel->getSpacing(spc);
2530 //Adding the manualContourControler to interface objects structure
2531 //Adding the manualViewContour to interface objects structure
2532 //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
2533 _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
2538 int numero = (int)(z-minZ+1)/(int)totalZ;
2539 std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
2541 interfMainPanel::getInstance()->setStringSpread(stringtemp);
2543 //RefreshInterface();
2546 void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector)
2548 _instantPanel->getInstant( tempVector );
2551 std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide)
2553 std::vector<int> tempVector;
2554 _instantPanel->getInstant(tempVector);
2555 //Asignation of slide number should be different ex by name
2556 tempVector[1]=slide;
2557 return kernelManager->getOutlinesNameAtInstant(tempVector);
2561 void wxContourMainFrame::SetScalarRange(int grayRangeMin, int grayRangeMax)
2563 _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2567 void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax)
2570 wxString tempString;
2571 int maxContourGroup = 0;
2573 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2575 std::vector<manualBaseModel*> lstManConMod;
2576 std::vector<manualBaseModel*> lstManConModTmp;
2577 std::vector<manualBaseModel*> lstManConModExp;
2578 std::vector<double> pLstValue;
2579 std::vector<double> pLstValuePosX;
2580 std::vector<double> pLstValuePosY;
2581 std::vector<double> pLstValuePosZ;
2584 int resultGrayRangeCount;
2587 double resultAverage;
2588 double resultStandardeviation;
2590 std::vector<int> tempVector;
2591 _instantPanel->getInstant( tempVector );
2594 int ii,sizeLstContourThings;
2603 if (selection==0 ) // actual slice
2605 int actualSlice = tempVector[1];
2608 } else { // slice range
2614 totalZ = maxZ-minZ+1;
2616 _contourextractdata->InitVolumeStatistics();
2619 for ( z=minZ ; z<=maxZ ; z++ )
2622 porcent = 100.0* (z-minZ)/totalZ;
2623 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2625 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2626 //_staticTextInformation->SetLabel(tmpString);
2628 //Extraction data from contours of each slice
2629 _contourextractdata->SetZtoBeAnalys(z);
2632 Instant instant(&tempVector);
2633 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
2634 sizeLstContourThings = lstContourThings.size();
2636 lstManConMod.clear();
2637 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2639 ContourThing **contourthing = lstContourThings[ii];
2640 lstManConMod.push_back( (*contourthing)->getModel() );
2643 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2645 tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
2646 interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
2647 //_grid->SetRowLabelValue(z, tempString );
2649 int iContourGroup,sizeContourGroup;
2650 if (typeContourGroup==3) // contour separete
2652 sizeContourGroup=lstManConModExp.size();
2653 if ( maxContourGroup<sizeContourGroup )
2655 maxContourGroup=sizeContourGroup;
2657 } else { // contour AND OR XOR
2664 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2665 lstManConModTmp.clear();
2669 if (typeContourGroup==3) // contour separete
2671 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2672 } else { // contour AND OR XOR
2673 lstManConModTmp = lstManConModExp;
2676 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2677 _contourextractdata->SetScalarRange(grayRangeMin,grayRangeMax);
2680 pLstValuePosX.clear();
2681 pLstValuePosY.clear();
2682 pLstValuePosZ.clear();
2686 _contourextractdata->GetValuesInsideCrown( &numberOfPixels,
2692 resultSize=numberOfPixels;
2693 // Statistics of each slice.
2694 _contourextractdata->Statistics( &pLstValue,
2697 &resultGrayRangeCount,
2702 &resultStandardeviation);
2704 if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1) )
2706 interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
2709 tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
2711 tempString.Printf(_T("%d"),numberOfPixels);
2713 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
2715 tempString.Printf(_T("%d"),resultGrayRangeCount);
2716 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
2718 tempString.Printf(_T("%f"),resultMin);
2719 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
2721 tempString.Printf(_T("%f"),resultMax);
2722 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
2724 tempString.Printf(_T("%f"),resultAverage);
2725 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
2727 tempString.Printf(_T("%f"),resultStandardeviation);
2728 interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
2731 } // for iContourGroup
2734 // Print Volume Statistics
2737 int vol_rCountRange;
2739 double vol_minValue;
2740 double vol_maxValue;
2742 double vol_standardeviation;
2744 if (selection!=0 ) // actual slice
2747 _contourextractdata->GetVolumeStatistics(&vol_rCountRange, &vol_rsize,
2748 &vol_minValue, &vol_maxValue,
2749 &vol_average, &vol_standardeviation);
2751 interfMainPanel::getInstance()->setRowLabelInfoPanel(maxZ+2, _T("Total:"));
2753 tempString.Printf(_T("%d"),vol_rsize);
2754 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 0, tempString);
2756 tempString.Printf(_T("%d"),vol_rCountRange);
2757 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 1, tempString);
2759 tempString.Printf(_T("%f"),vol_minValue);
2760 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 2, tempString);
2762 tempString.Printf(_T("%f"),vol_maxValue);
2763 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 3, tempString);
2765 tempString.Printf(_T("%f"),vol_average);
2766 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 4, tempString);
2768 tempString.Printf(_T("%f"),vol_standardeviation);
2769 interfMainPanel::getInstance()->setCellValueInfoPanel(maxZ+2, 5, tempString);
2771 //-----------------------------------------
2774 wxString tmpTitleString;
2776 for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
2778 tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
2779 tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
2780 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
2782 interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
2783 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
2784 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
2785 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
2786 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
2787 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
2788 interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
2790 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
2794 void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename,
2795 int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics)
2799 SaveValuesXYZ( directory , namefile, typeContourGroup );
2804 vtkImageData * mask;
2805 vtkImageData * value;
2806 this->getMaskValue(&mask, &value, typeContourGroup,selection,minZ,maxZ);
2807 this->SaveImageResult( directory , namefile, mask, value);
2812 std::ostringstream name;
2813 name << filename << ".xls";
2816 FILE *pFile=fopen(name.str().c_str(),"w+");
2822 // int sizeZ = _theViewPanel->GetImageDataSizeZ();
2823 // int maxY=sizeZ+2;
2825 maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
2828 int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
2829 for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
2831 // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
2832 fprintf(pFile,"slice\t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
2834 fprintf(pFile,"\n\n" );
2838 if (selection==0 ) // actual slice
2840 std::vector<int> tempVector;
2841 _instantPanel->getInstant( tempVector );
2842 int actualSlice = tempVector[1];
2848 for ( j=minZ; j<=maxZ ; j++)
2850 fprintf(pFile,"%d\t" , j );
2851 for (i=0 ; i<maxX ; i++){
2852 tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
2853 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2855 fprintf(pFile,"\n" );
2859 // Total of stadistics.....
2862 fprintf(pFile,"\n Total:\t" );
2863 for (i=0 ; i<maxX ; i++){
2864 tmpString = interfMainPanel::getInstance()->getCellValue(maxZ+2, i);//_grid->GetCellValue( maxZ+2 , i );
2865 fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
2867 fprintf(pFile,"\n" );
2875 void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
2879 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
2880 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
2882 std::vector<manualBaseModel*> lstManConMod;
2883 std::vector<manualBaseModel*> lstManConModTmp;
2884 std::vector<manualBaseModel*> lstManConModExp;
2885 std::vector<double> pLstValue;
2886 std::vector<double> pLstValuePosX;
2887 std::vector<double> pLstValuePosY;
2888 std::vector<double> pLstValuePosZ;
2890 std::vector<int> tempVector;
2891 _instantPanel->getInstant( tempVector );
2893 int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
2895 int ii,sizeLstContourThings;
2902 minZ = 0;// _mbarrange->GetStart();
2903 maxZ = sizeZ;//_mbarrange->GetEnd();
2904 totalZ = maxZ-minZ+1;
2908 for ( z=0 ; z<sizeZ ; z++)
2911 porcent = 100.0* (z-minZ)/totalZ;
2913 tmpString.Printf(_T("Saving Values"));
2914 tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
2915 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
2916 //_staticTextInformation->SetLabel(tmpString);
2919 //Extraction data from contours of each slice
2920 _contourextractdata->SetZtoBeAnalys( z);
2923 Instant instant(&tempVector);
2924 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
2925 sizeLstContourThings = lstContourThings.size();
2927 lstManConMod.clear();
2928 for (ii=0 ; ii<sizeLstContourThings ; ii++)
2930 ContourThing **contourthing = lstContourThings[ii];
2931 lstManConMod.push_back( (*contourthing)->getModel() );
2933 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
2938 int iContourGroup,sizeContourGroup;
2939 if (typeContourGroup==3) // contour separete
2941 sizeContourGroup=lstManConModExp.size();
2942 } else { // contour AND OR XOR
2946 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
2947 lstManConModTmp.clear();
2948 if (typeContourGroup==3) // contour separete
2950 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
2951 } else { // contour AND OR XOR
2952 lstManConModTmp = lstManConModExp;
2955 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
2958 pLstValuePosX.clear();
2959 pLstValuePosY.clear();
2960 pLstValuePosZ.clear();
2962 _contourextractdata->GetValuesInsideCrown( &numberOfPixels,
2968 std::string temp = directory + "/" + namefile + "-slice";
2969 temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
2970 temp = temp + ".txt";
2972 // LG 14/01/09 : using crea
2973 wxString filename = crea::std2wx(temp);
2974 /*filename.Printf(_T("%s"),directory.c_str());
2975 filename.append(_T("\\"));
2976 filename.append(_T("%s"),namefile.c_str());
2977 filename.append(_T("-slice"));
2978 filename.append(_T("%d"),z);
2979 filename.append(_T("-cont"));
2980 filename.append(_T("%d"),iContourGroup);
2981 filename.append(_T(".txt"));*/
2982 // filename.Printf(temp.c_str());
2986 FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
2987 fprintf(pFile,"value \t x \t y \t z\n" );
2988 int iLstValue,sizeLstValue=pLstValue.size();
2989 for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
2991 fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
2994 } // for iContourGroup
2996 interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
2997 //_staticTextInformation->SetLabel( _T("") );
3001 void wxContourMainFrame::getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ){
3004 //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
3005 if (typeContourGroup==3)
3009 _contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
3011 std::vector<manualBaseModel*> lstManConMod;
3012 std::vector<manualBaseModel*> lstManConModTmp;
3013 std::vector<manualBaseModel*> lstManConModExp;
3015 std::vector<int> tempVector;
3016 _instantPanel->getInstant( tempVector );
3018 vtkImageData *imagedata = _theViewPanel->getImageData();
3020 imagedata->GetExtent(ext);
3021 int sizeZimage = ext[5]-ext[4]+1;
3023 int ii,sizeLstContourThings;
3031 if (selection==0 ) // actual slice
3033 int actualSlice = tempVector[1];
3041 // cleanning image before range
3042 for (z=0; z<minZ; z++){
3043 _contourextractdata->ResetImageResult(z);
3045 // cleanning image after range
3046 for (z=maxZ+1; z<sizeZimage; z++){
3047 _contourextractdata->ResetImageResult(z);
3052 for ( z=minZ ; z<=maxZ ; z++)
3055 porcent = 100.0* (z-minZ)/totalZ;
3056 tmpString.Printf(_T("Saving Values"));
3057 tmpString.Printf(_T("%d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
3058 interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
3060 //Extraction data from contours of each slice
3061 _contourextractdata->SetZtoBeAnalys( z);
3064 Instant instant(&tempVector);
3065 std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
3066 sizeLstContourThings = lstContourThings.size();
3068 lstManConMod.clear();
3069 for (ii=0 ; ii<sizeLstContourThings ; ii++)
3071 ContourThing **contourthing = lstContourThings[ii];
3072 lstManConMod.push_back( (*contourthing)->getModel() );
3074 lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
3077 int iContourGroup,sizeContourGroup;
3078 if (typeContourGroup==3) // contour separete
3080 sizeContourGroup=lstManConModExp.size();
3081 } else { // contour AND OR XOR
3085 for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
3086 lstManConModTmp.clear();
3087 if (typeContourGroup==3) // contour separete
3089 lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
3090 } else { // contour AND OR XOR
3091 lstManConModTmp = lstManConModExp;
3094 _contourextractdata->SetLstManualContourModel( lstManConModTmp );
3095 _contourextractdata->CalculateImageResult(); // with actual Z
3097 } // for iContourGroup
3100 (*value) = _contourextractdata->GetVtkImageValueResult();
3101 (*mask) = _contourextractdata->GetVtkImageMaskResult();
3105 std::string wxContourMainFrame::GetStringTypeImage( vtkImageData* image)
3107 std::string result="";
3108 if ( image->GetScalarType()==VTK_CHAR )
3111 } else if ( image->GetScalarType()==VTK_UNSIGNED_CHAR ){
3113 } else if ( image->GetScalarType()==VTK_FLOAT ){
3115 } else if ( image->GetScalarType()==VTK_DOUBLE ){
3117 } else if ( image->GetScalarType()==VTK_INT ){
3119 } else if ( image->GetScalarType()==VTK_UNSIGNED_INT ){
3121 } else if ( image->GetScalarType()==VTK_SHORT ){
3123 } else if ( image->GetScalarType()==VTK_UNSIGNED_SHORT ){
3125 } else if ( image->GetScalarType()==VTK_LONG ){
3127 } else if ( image->GetScalarType()==VTK_UNSIGNED_LONG ){
3133 void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value)
3135 std::string stringType;
3137 kernelManager->GetSpacing(spc,0); // returns the spacing of the first image
3138 stringType = GetStringTypeImage(value);
3139 std::string temp = directory + "/" + namefile + "-image-Value-"+stringType+".mhd";
3141 wxString filename = crea::std2wx(temp);
3145 vtkImageChangeInformation *valueChInfo = vtkImageChangeInformation::New();
3146 //EED 2017-01-01 Migration VTK7
3147 #if VTK_MAJOR_VERSION <= 5
3148 valueChInfo->SetInput(value);
3150 valueChInfo->SetInputData(value);
3152 valueChInfo->SetSpacingScale(spc);
3153 valueChInfo->Update();
3154 vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
3156 //EED 2017-01-01 Migration VTK7
3157 #if VTK_MAJOR_VERSION <= 5
3158 writerValueImage->SetInput( valueChInfo->GetOutput() );
3160 writerValueImage->SetInputData( valueChInfo->GetOutput() );
3162 writerValueImage->SetFileName( (const char *)filename.mb_str() );
3163 writerValueImage->SetFileDimensionality( 3 );
3164 writerValueImage->SetCompression(false);
3165 writerValueImage->Write( );
3168 stringType = GetStringTypeImage(mask);
3169 temp = directory + "/" + namefile + "-image-Mask-"+stringType+".mhd";
3171 // LG 14/01/09 : using crea
3172 filename = crea::std2wx(temp);
3173 // filename.Printf(_T(temp.c_str()));
3176 vtkImageChangeInformation *maskChInfo = vtkImageChangeInformation::New();
3177 //EED 2017-01-01 Migration VTK7
3178 #if VTK_MAJOR_VERSION <= 5
3179 maskChInfo->SetInput(mask);
3181 maskChInfo->SetInputData(mask);
3183 maskChInfo->SetSpacingScale(spc);
3184 maskChInfo->Update();
3185 vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
3187 //EED 2017-01-01 Migration VTK7
3188 #if VTK_MAJOR_VERSION <= 5
3189 writerMaskImage->SetInput( maskChInfo->GetOutput() );
3191 writerMaskImage->SetInputData( maskChInfo->GetOutput() );
3194 writerMaskImage->SetFileName( (const char *)filename.mb_str() );
3195 writerMaskImage->SetFileDimensionality( 3 );
3196 writerMaskImage->SetCompression(false);
3197 writerMaskImage->Write( );
3199 interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
3205 void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
3206 if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
3207 _theViewPanel->setActualVertical( value);
3209 else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) ) {
3210 _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
3216 void wxContourMainFrame::onSnakePressed(){
3217 std::vector<double> vecX;
3218 std::vector<double> vecY;
3219 std::vector<double> vecZ;
3220 _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
3222 if (vecX.size()!=0){
3223 std::vector<int> tempVector;
3224 _instantPanel->getInstant( tempVector );
3225 int i,size=vecZ.size();
3226 int actualSlice = tempVector[1];
3227 for ( i=0 ; i<size ; i++ )
3229 vecZ[i] = actualSlice;
3232 wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
3233 wxPanel* panel = new wxPanel(dialog,-1);
3234 // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3235 new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
3236 dialog->ShowModal();
3241 void wxContourMainFrame::saveFileWithContoursAutomatique()
3243 printf("EED wxContourMainFrame::saveFileWithContoursAutomatique \n");
3244 std::string filename = kernelManager->getCurrentFileName();
3245 if(filename.compare("")!=0){
3246 saveFileWithContours(filename);
3251 void wxContourMainFrame::ShowToolsPanel(bool show)
3253 _pannew->Show(show);
3258 void wxContourMainFrame::SetContourGroup(int contourGroup)
3260 _contourGroup = contourGroup;
3264 wxPanel *wxContourMainFrame::getMaskImageViewPanel(wxWindow *parent)
3267 if (_viewMaskImagePanel==NULL)
3269 _contourextractdata = new ContourExtractData(true);
3270 _contourextractdata->SetImage( _theViewPanel->getImageData() );
3272 // _theViewPanel->getImageData()->GetScalarRange(range);
3273 //int min = (int)floor (range[0]);
3274 //int max = (int)ceil (range[1]);
3280 _viewMaskImagePanel = new ThresholdImageViewPanel( parent, -1, -1 , -1,-1, 0);
3281 _viewMaskImage = new ThresholdImageView();
3282 _viewMaskImage->SetImage( _contourextractdata->GetVtkImageMaskResult() );
3283 _viewMaskImage->SetminMaxValue( min, max);
3284 _viewMaskImage->SetBaseColor( 0,0,1 );
3287 std::vector<int> colorbarposition;
3288 colorbarposition.push_back( -999 );
3289 colorbarposition.push_back( -999 );
3290 _viewMaskImage->SetColorBarPosition( colorbarposition );
3292 _viewMaskImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3293 _viewMaskImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3295 _viewMaskImagePanel->SetThresholdImageView( _viewMaskImage );
3296 _viewMaskImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3297 _viewMaskImage->onThresholdChangeOpacity( 25 );
3299 return _viewMaskImagePanel;
3303 wxPanel *wxContourMainFrame::getColorLayerImageViewPanel(wxWindow *parent)
3305 if (_viewColorLayerImagePanel==NULL)
3308 _theViewPanel->getImageData()->GetScalarRange(range);
3309 int min = (int)floor (range[0]);
3310 int max = (int)ceil (range[1]);
3311 _viewColorLayerImagePanel = new ColorLayerImageViewPanel( parent, min, max, 100, 1);
3312 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetwxVtkBaseView( 0 , _theViewPanel->getWxVtkBaseView() );
3313 // std::vector<double> range = bbGetInputlstRangeForColorBar();
3314 // clivp->GetColorLayerImageViewManager()->SetRangeForColorBar( range );
3315 std::vector<int> colorbarposition;
3316 colorbarposition.push_back( 50 );
3317 colorbarposition.push_back( 105 );
3318 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetColorBarPosition( colorbarposition );
3319 // std::vector<double> base_color;
3320 // _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseColors( base_color );
3321 // std::vector<double> grey_level_boundaries;
3322 // clivp->GetColorLayerImageViewManager()->SetGreyLevelBoundaries( grey_level_boundaries );
3323 std::vector<double> transparence_level_boundaries;
3324 transparence_level_boundaries.push_back(0);
3325 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetBaseTransparence( transparence_level_boundaries );
3326 _viewColorLayerImagePanel->GetColorLayerImageViewManager()->SetPlainOrGradientColor( false );
3327 // _viewColorLayerImagePanel->SetFittingMode( 3 );
3329 return _viewColorLayerImagePanel;
3333 wxPanel *wxContourMainFrame::getThresholdImageViewPanel(wxWindow *parent)
3335 if (_viewThresholdImagePanel==NULL)
3338 _theViewPanel->getImageData()->GetScalarRange(range);
3339 int min = (int)floor (range[0]);
3340 int max = (int)ceil (range[1]);
3341 int start= (max+min)/2 - (max-min)*0.25;
3342 int end= (max+min)/2 + (max-min)*0.25;
3343 _viewThresholdImagePanel = new ThresholdImageViewPanel( parent, min, max, start, end , 1);
3344 _viewThresholdImage = new ThresholdImageView();
3345 _viewThresholdImage->SetminMaxValue(start,end);
3346 _viewThresholdImage->SetImage( _theViewPanel->getImageData() );
3347 std::vector<int> colorbarposition;
3348 colorbarposition.push_back( 10 );
3349 colorbarposition.push_back( 105 );
3350 _viewThresholdImage->SetColorBarPosition( colorbarposition );
3352 _viewThresholdImage->SetSpcBase( _theViewPanel->getImageData()->GetSpacing() );
3353 _viewThresholdImage->SetNewSpacingLayer( _theViewPanel->getImageData()->GetSpacing() );
3355 _viewThresholdImage->SetBaseColor( 1,0,0 );
3356 _viewThresholdImagePanel->SetThresholdImageView( _viewThresholdImage );
3357 _viewThresholdImage->SetwxVtkBaseView( _theViewPanel->getWxVtkBaseView() );
3358 _viewThresholdImage->onThresholdChangeOpacity( 25 );
3361 return _viewThresholdImagePanel;
3364 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
3365 int wxContourMainFrame::getType ()
3368 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3370 if(!currentSelection.empty())
3372 std::string cloneName = currentSelection [0];
3373 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);
3374 tipo = manualModel-> GetTypeModel();
3379 double wxContourMainFrame::getContourSizeInPixels()
3381 double contourSize = 0;
3383 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects(); if(!currentSelection.empty())
3384 if(!currentSelection.empty())
3386 std::string cloneName = currentSelection [0];
3388 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3391 // contourSize = manualModel->GetPathSize();
3396 contourSize = manualModel->GetPathSize( spc );
3401 manualBaseModel * wxContourMainFrame::getContour ()
3403 std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
3405 if(!currentSelection.empty())
3407 std::string cloneName = currentSelection [0];
3408 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(cloneName);//_modelManager->getOutlineByKeyName( cloneName )->getModel();
3413 void wxContourMainFrame::onPrintLabel (wxString label, manualBaseModel* manualModel)
3415 std::string labelAscii(label.ToAscii());
3416 int pos = labelAscii.find(" ");
3420 for (j=0 ; pos != string::npos;j++)
3422 labelAscii.replace( pos, 1, "_" );
3423 pos= labelAscii.find(" ");
3426 manualModel -> SetLabel(labelAscii);
3428 void wxContourMainFrame::onInsertCalculation(manualBaseModel* manualModel)
3431 // double sizeInPixel = manualModel ->GetPathSize( );
3436 double sizeInPixel = manualModel ->GetPathSize( spc );
3438 double onePixelRealSize = interfMainPanel::getInstance()->GetPixelValue();;
3439 double realContourSize = sizeInPixel*onePixelRealSize;
3440 manualModel ->SetRealSize(realContourSize);
3443 double wxContourMainFrame::onePixelSize( double value)
3445 return _onePixelSize = value;
3448 std::string wxContourMainFrame::GetFileLocation()
3450 return _fileLocation;
3453 void wxContourMainFrame::SetFileLocation(std::string newFileLocation)
3455 _fileLocation = newFileLocation;
3456 std::cout<<"GETFILELOCATION:"<<_fileLocation<<std::endl;
3459 kernelManager->setCurrentFileName(_fileLocation);
3461 //------------------------------------------------------------------------------------------------------------
3470 void wxContourMainFrame::FlipSelectedContours(int flipDirection)
3473 (std::vector<std::string>)_theViewPanel->getSceneManager()->getSelectedObjects() ,
3479 void wxContourMainFrame::FlipActualSliceContours(int flipDirection)
3482 (std::vector<std::string>)_theViewPanel->getSceneManager()->GetlstContoursNameActualSlice() ,
3487 void wxContourMainFrame::FlipAllContours(int flipDirection)
3490 kernelManager->GetLstNameThings() ,
3495 void wxContourMainFrame::FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection)
3498 getImageData()->GetExtent(ext);
3499 int sizeX = ext[1]-ext[0];
3500 int sizeY = ext[3]-ext[2];
3503 int i,sizeLstNameThings;
3504 int ii,sizeLstPoints;
3506 sizeLstNameThings = lstNameThings.size();
3507 for (i=0 ; i<sizeLstNameThings ; i++)
3509 printf("EED wxContourMainFrame::FlipAllContours contour=%d \n", i );
3510 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3511 if (flipDirection==0)
3513 manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3515 manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3517 }// for i list of Things
3519 //-- Static Contours
3521 lstNameThings = kernelManager->GetLstNameThingsStatic();
3522 sizeLstNameThings = lstNameThings.size();
3523 for (i=0 ; i<sizeLstNameThings ; i++)
3525 manualBaseModel * manualModel = kernelManager->getOutlineByKeyName(lstNameThings[i]);
3526 if (flipDirection==0)
3528 manualModel->Transform_Ax_Plus_B(-1,sizeX,1,0 );
3530 manualModel->Transform_Ax_Plus_B(1,0,-1,sizeY );
3532 }// for i list of static things
3535 void wxContourMainFrame::FlipContours(int typeContourFlip, int flipDirection)
3537 printf("EED wxContourMainFrame::FlipContours( %d , %d ) \n",typeContourFlip, flipDirection );
3541 if (typeContourFlip==0) //
3543 FlipSelectedContours(flipDirection);
3546 if (typeContourFlip==1) //
3548 FlipActualSliceContours(flipDirection);
3551 if (typeContourFlip==2) //
3553 FlipAllContours(flipDirection);
3559 void wxContourMainFrame::SetXY(int x, int y)
3561 _theViewPanel->SetXY(x,y);