lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.h

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 #ifndef __wxContourMainFrame_h_INCLUDED_H__
  27 #define __wxContourMainFrame_h_INCLUDED_H__
  28
  29
  30 // -----------------------------------------------------------------------------------------------------------
  31 // WX headers inclusion.
  32 // For compilers that support precompilation, includes <wx/wx.h>.
  33 // -----------------------------------------------------------------------------------------------------------
  34
  35 #include <wx/wxprec.h>
  36 #ifdef __BORLANDC__
  37 #pragma hdrstop
  38 #endif
  39 #ifndef WX_PRECOMP
  40 #include <wx/wx.h>
  41 #endif
  42
  43
  44 //------------------------------------------------------------------------------------------------------------
  45 // Includes
  46 //------------------------------------------------------------------------------------------------------------
  47 #include "wx/aui/aui.h"
  48
  49 #include "interfMainPanel.h"
  50 #include "KernelManagerContour.h"
  51
  52 //#include "wxVtkBaseView_SceneManager.h"
  53 #include "wxInstantChooserPanel.h"
  54 #include "wxContourViewPanel.h"
  55
  56 //#include "ContourWorkspace.h"
  57 #include "ContourExtractData.h"
  58 #include "PerformingOperation.h"
  59
  60 #include "manualLineControler.h"
  61 #include "manualContourModelLine.h"
  62 #include "manualViewLine.h"
  63
  64 #include "ThresholdImageView.h"
  65 #include "ThresholdImageViewPanel.h"
  66 #include "ColorLayerImageView.h"
  67 #include "ColorLayerImageViewPanel.h"
  68
  69
  70 //ITK
  71 #include "itkImage.h"
  72 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
  73
  74 #include "itkCurvatureAnisotropicDiffusionImageFilter.h"
  75 #include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
  76 #include "itkSigmoidImageFilter.h"
  77 #include "itkFastMarchingImageFilter.h"
  78 #include "itkRescaleIntensityImageFilter.h"
  79 #include "itkBinaryThresholdImageFilter.h"
  80 #include "itkZeroCrossingImageFilter.h"
  81 #include "itkCastImageFilter.h"
  82
  83 //EED10JUIN2011  #include "itkImageFileWriter.h"
  84
  85 #include "itkImageToVTKImageFilter.h"
  86 #include "itkVTKImageToImageFilter.h"
  87
  88 //VTK
  89 #include <vtkImageSeedConnectivity.h>
  90 #include <vtkImageMarchingCubes.h>
  91 #include "vtkContourFilter.h"
  92 #include "vtkMarchingContourFilter.h"
  93 #include "vtkPolyDataConnectivityFilter.h"
  94 #include "vtkCleanPolyData.h"
  95 #include "vtkImageReslice.h"
  96 #include "vtkMetaImageWriter.h"
  97 #include "vtkImageData.h"
  98 #include "vtkTransform.h"
  99 #include "vtkCamera.h"
 100 #include "vtkImageActor.h"
 101 #include <vtkImageMapToColors.h>
 102 #include <vtkLookupTable.h>
 103 #include <vtkCommand.h>
 104
 105 //#include "vtkMetaImageReader.h"
 106
 107 //------------------------------------------------------------------------------------------------------------
 108 // Events declaration
 109 //------------------------------------------------------------------------------------------------------------
 110
 111 //BEGIN_DECLARE_EVENT_TYPES()
 112 //END_DECLARE_EVENT_TYPES()
 113
 114 /** file wxContourMainFrame.h */
 115
 116
 117 //------------------------------------------------------------------------------------------------------------
 118 // Class definition
 119 //------------------------------------------------------------------------------------------------------------
 120 class interfMainPanel;
 121 class wxContourMainFrame : public wxPanel {
 122         public:
 123         //------------------------------------------------------------------------------------------------------------
 124         // Constructors & Destructors
 125         //------------------------------------------------------------------------------------------------------------
 126         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
 127         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 128         ~wxContourMainFrame();
 129         //------------------------------------------------------------------------------------------------------------
 130         // Creational and initialization methods
 131         //------------------------------------------------------------------------------------------------------------
 132         void setVectImages(std::vector<vtkImageData*> imgs);
 133         bool configurePanels( );
 134         bool addNewPanel(wxPanel* panel);
 135         wxAuiNotebook * createNotebook();
 136         void createInstantChooserPanel(wxAuiNotebook * parent);
 137         void createViewPanel(wxAuiNotebook * parent);
 138         void createInstantChooserPanel(wxWindow * parent);
 139         void createViewPanel(wxWindow * parent);
 140         void setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel );
 141         void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
 142         void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
 143         void ShowToolsPanel(bool show);
 144         ////------------------------------------------------------------------------------------------------------------
 145         //// Methods for capturing events
 146         ////------------------------------------------------------------------------------------------------------------
 147
 148         ////------------------------------------------------------------------------------------------------------------
 149         ////  Model management methods
 150         ////------------------------------------------------------------------------------------------------------------
 151
 152         //------------------------------------------------------------------------------------------------------------
 153         //  Attributes getters and setters
 154         //------------------------------------------------------------------------------------------------------------
 155         static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 156         static wxContourMainFrame* getInstance();
 157         static void resetInstance();
 158
 159         //------------------------------------------------------------------------------------------------------------
 160         //  Other functional methods
 161         //------------------------------------------------------------------------------------------------------------
 162
 163         /*
 164         ** This method returns the vector of images selected by the user
 165         **      return value std::vector<vtkImageData*>
 166         */
 167         std::vector<vtkImageData*> getVectImages();
 168
 169         /**
 170         **      This methods connect the event in the class interfMainPanel with the world of the appli
 171         **/
 172         void onCreateContourSpline( );
 173         void onCreateContourRectangle( );
 174         void onCreateContourCircle( );
 175         void onCreateContourLine( );
 176         void onCreateContourPoints( );
 177         void onCreateContourPolygon( );
 178         void onCreateContourBullEye(wxPanel* pan);
 179         /////////////////////////////////
 180         void onDeleteContour();
 181         void deleteContours( std::vector<std::string>  keyNamesVector );
 182         void deleteContour( std::string theKeyName );
 183         void onDeleteContoursActSlice();
 184         void onDeleteAllContours();
 185         void deleteAllContours();
 186         void setConceptValue( std::string name, int value );
 187         ConceptDataWrap* getLastConceptData();
 188         bool getIfConceptCheckedAt( std::string name, int pos );
 189         void changeInstant();
 190         int getNamesWrappingSize();
 191         std::string getNameWrapping(int i);
 192         void updateInstantOutlines();
 193         void updateInstantImageData();
 194         void updateInstantAxes();
 195         void onChangeDeep(int val);
 196 ///////////////////////////
 197         void onCopy();
 198         void onPaste();
 199         void onUndo();
 200         void onRedo();
 201         void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 202         void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 203 ///////////////////////7
 204         void onLoad();
 205         void onSave();
 206         void onImport();
 207         void onTest();
 208         void openContours( FILE *pFile, FILE *pFileData, bool staticContour );
 209         void RefreshInterface();
 210         vtkImageData* getImageData();
 211         void onSegmentationOneSlice(int isovalue,int sampling,int method);
 212         void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 213         void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
 214         void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 215         void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
 216         int  GetImageDataSizeZ();
 217         void GetImageDataRange(double *range);
 218         void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
 219
 220         //AD
 221         void referenceLine();
 222         void refLineHide();
 223         void refLineShow();
 224         void refLineChangeWidth(int width);
 225
 226         //AD
 227         void onMirror();
 228
 229         //EED
 230         void FlipContours(int typeContourFlip, int flipDirection);
 231         void FlipSelectedContours(int flipDirection);
 232         void FlipActualSliceContours(int flipDirection);
 233         void FlipAllContours(int flipDirection);
 234         void FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection);
 235
 236 //====================================================================================================
 237
 238         void showAxis(bool show);
 239         void onRigidPressed();
 240         void onWidthOfContour(double width);
 241         int getColorWindow();
 242         int getWindowLevel();
 243         void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
 244         void onInterpolation(bool interpolate);
 245         void onShowTextContour(bool show);
 246         void onBeforeAfterContour(bool before, bool after);
 247         void onJumpSlice(int step,int shift);
 248         void onChangeInstant(std::string name,int actual);
 249         void resetAppend();
 250         void onSpreadAdd();
 251         void onSpreadAddAll();
 252         void onSpreadGo(int type);
 253         void getInstantVector(std::vector<int>& tempVector);
 254         std::vector<std::string> getOutlinesName(int slide);
 255
 256         //
 257         //
 258         // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
 259         //
 260         void    onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
 261         void    onSaveResults(std::string directory,std::string namefile, std::string filename,
 262         int     typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
 263         void    SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
 264         void    onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
 265         void    onSnakePressed();
 266         void    saveFileWithContoursAutomatique();
 267         void    ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
 268         wxPanel *getMaskImageViewPanel(wxWindow *parent);
 269         void    SetContourGroup(int contourGroup);
 270         wxPanel *getThresholdImageViewPanel(wxWindow *parent);
 271         wxPanel *getColorLayerImageViewPanel(wxWindow *parent);
 272
 273 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 274
 275         /**
 276         * Associates the String parameter with the contour
 277         * @param label Label entered by the user
 278         * @param manualBaseModel Currently selected contour
 279         */
 280         void onPrintLabel (wxString label, manualBaseModel* manualModel);
 281
 282         /**
 283         * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
 284         * @param manualBaseModel Currently selected contour
 285         */
 286         void onInsertCalculation(manualBaseModel* manualModel);
 287
 288         /**
 289         * Assigns and returns the value of a pixel in millimeters
 290         @ param value Measure of the pixel in millimeters
 291         */
 292         double onePixelSize(double value);
 293
 294         /**
 295         * Returns the type of the currently selected contour
 296         */
 297         int getType();
 298
 299         /**
 300         * Returns the size in pixels of the currently selected contour
 301         */
 302         double getContourSizeInPixels();
 303
 304         /**
 305         * Returns the currently selected contour. If no contour is selected returns NULL
 306         */
 307         manualBaseModel* getContour();
 308
 309         /**
 310         * Returns the Path of the data persistence file
 311         */
 312         std::string GetFileLocation();
 313
 314         /**
 315         * Assign a new path to the data persistence file
 316         @ param newFileLocation New path of the file
 317         */
 318         void SetFileLocation(std::string newFileLocation);
 319 //------------------------------------------------------------------------------------------------------------
 320
 321         void SetScalarRange(int grayRangeMin, int grayRangeMax);
 322         std::string GetStringTypeImage( vtkImageData* image);
 323
 324 //------------------------------------------------------------------------------------------------------------
 325
 326         void SetXY(int x,int y);
 327
 328
 329 private:
 330         //------------------------------------------------------------------------------------------------------------
 331         //  Private methods
 332         //------------------------------------------------------------------------------------------------------------
 333
 334
 335         //------------------------------------------------------------------------------------------------------------
 336         // Attributtes
 337         //------------------------------------------------------------------------------------------------------------
 338
 339         int _contourGroup;
 340         static wxContourMainFrame   *instance;
 341         KernelManagerContour        *kernelManager;
 342         interfMainPanel             *_pannew;
 343         PerformingOperation         *_performingOperation;
 344         std::string                 _datadir;
 345         wxContourViewPanel          *_theViewPanel;
 346         wxInstantChooserPanel       *_instantPanel;
 347
 348         //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
 349         manualLineControler         *_refLineControl;
 350         manualContourModelLine      *_refLineModel;
 351         manualViewLine              *_refLineView;
 352
 353         wxAuiManager                m_mgr;
 354         wxAuiNotebook               *notebook;
 355         long                    m_notebook_style;
 356         long                    m_notebook_theme;
 357         int                      _numberOfVariablesStatistics;
 358
 359         // Contour Image Mask
 360         ThresholdImageView                      *_viewMaskImage;
 361         ThresholdImageViewPanel         *_viewMaskImagePanel;
 362
 363         // Threshold Image
 364         ThresholdImageView                      *_viewThresholdImage;
 365         ThresholdImageViewPanel         *_viewThresholdImagePanel;
 366
 367         // Color Layer Image
 368         ColorLayerImageViewPanel        *_viewColorLayerImagePanel;
 369         std::vector<vtkImageData*>  _images;
 370         bool                        _actorPresent;
 371
 372     // temporary variables readding .roi file
 373     int                                 _tmpReadFileImageDim[3];
 374         double                                  _tmpReadFileImageSpac[3];
 375     int                                 _tmpReadFileTypeOfTransformation;
 376     void readDimSpc(FILE *pFile, bool interactiveOption);
 377
 378
 379         /*DECLARE_CLASS(wxContourMainFrame)
 380         // any class wishing to process wxWindows events must use this macro
 381         DECLARE_EVENT_TABLE()*/
 382         bool                        _creatingContoursActive;
 383 ////////JCP 21 - 11 - 08
 384         void createContour( int typeContour );
 385         //manualContourModel * factoryManualContourModel(int typeContour);
 386         manualBaseModel * factoryManualContourModel(wxPanel* panel);
 387         ContourExtractData              *_contourextractdata;
 388
 389         void saveState();
 390         void loadState(std::string filename);
 391
 392 //      void loadContours( FILE *pFile, bool staticContour );
 393
 394         void saveFileWithContours( std::string filename );
 395         void onLoadContours(std::string fileNameContourROI, bool interactiveInterface);
 396         void SetZForAllContours(int pz);
 397
 398         int                         inredo;
 399         int                         inundo;
 400         std::string                     stundoredo;
 401         static char                 COPY;
 402
 403 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 404         wxWindow                    *infoWin2;
 405         wxPanel                     *calibrationPanel;
 406         wxPanel                     *calibrationPanelError;
 407         double                      _onePixelSize;
 408         std::string                 _imageLocation;
 409         std::string                 _fileLocation;
 410 //------------------------------------------------------------------------------------------------------------
 411
 412         wxFrame                                         *_frameShowResultImages;
 413
 414 };
 415
 416 #endif