1 /*# ---------------------------------------------------------------------
3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
9 # This software is governed by the CeCILL-B license under French law and
10 # abiding by the rules of distribution of free software. You can use,
11 # modify and/ or redistribute the software under the terms of the CeCILL-B
12 # license as circulated by CEA, CNRS and INRIA at the following URL
13 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
14 # or in the file LICENSE.txt.
16 # As a counterpart to the access to the source code and rights to copy,
17 # modify and redistribute granted by the license, users are provided only
18 # with a limited warranty and the software's author, the holder of the
19 # economic rights, and the successive licensors have only limited
22 # The fact that you are presently reading this means that you have had
23 # knowledge of the CeCILL-B license and that you accept its terms.
24 # ------------------------------------------------------------------------ */
26 #ifndef __wxContourMainFrame_h_INCLUDED_H__
27 #define __wxContourMainFrame_h_INCLUDED_H__
30 // -----------------------------------------------------------------------------------------------------------
31 // WX headers inclusion.
32 // For compilers that support precompilation, includes <wx/wx.h>.
33 // -----------------------------------------------------------------------------------------------------------
35 #include <wx/wxprec.h>
44 //------------------------------------------------------------------------------------------------------------
46 //------------------------------------------------------------------------------------------------------------
47 #include "wx/aui/aui.h"
49 #include "interfMainPanel.h"
50 #include "KernelManagerContour.h"
52 //#include "wxVtkBaseView_SceneManager.h"
53 #include "wxInstantChooserPanel.h"
54 #include "wxContourViewPanel.h"
56 //#include "ContourWorkspace.h"
57 #include "ContourExtractData.h"
58 #include "PerformingOperation.h"
60 #include "manualLineControler.h"
61 #include "manualContourModelLine.h"
62 #include "manualViewLine.h"
64 #include "ThresholdImageView.h"
65 #include "ThresholdImageViewPanel.h"
66 #include "ColorLayerImageView.h"
67 #include "ColorLayerImageViewPanel.h"
72 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
74 #include "itkCurvatureAnisotropicDiffusionImageFilter.h"
75 #include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
76 #include "itkSigmoidImageFilter.h"
77 #include "itkFastMarchingImageFilter.h"
78 #include "itkRescaleIntensityImageFilter.h"
79 #include "itkBinaryThresholdImageFilter.h"
80 #include "itkZeroCrossingImageFilter.h"
81 #include "itkCastImageFilter.h"
83 //EED10JUIN2011 #include "itkImageFileWriter.h"
85 #include "itkImageToVTKImageFilter.h"
86 #include "itkVTKImageToImageFilter.h"
89 #include <vtkImageSeedConnectivity.h>
90 #include <vtkImageMarchingCubes.h>
91 #include "vtkContourFilter.h"
92 #include "vtkMarchingContourFilter.h"
93 #include "vtkPolyDataConnectivityFilter.h"
94 #include "vtkCleanPolyData.h"
95 #include "vtkImageReslice.h"
96 #include "vtkMetaImageWriter.h"
97 #include "vtkImageData.h"
98 #include "vtkTransform.h"
99 #include "vtkCamera.h"
100 #include "vtkImageActor.h"
101 #include <vtkImageMapToColors.h>
102 #include <vtkLookupTable.h>
103 #include <vtkCommand.h>
105 //#include "vtkMetaImageReader.h"
107 //------------------------------------------------------------------------------------------------------------
108 // Events declaration
109 //------------------------------------------------------------------------------------------------------------
111 //BEGIN_DECLARE_EVENT_TYPES()
112 //END_DECLARE_EVENT_TYPES()
114 /** file wxContourMainFrame.h */
117 //------------------------------------------------------------------------------------------------------------
119 //------------------------------------------------------------------------------------------------------------
120 class interfMainPanel;
121 class wxContourMainFrame : public wxPanel {
125 //------------------------------------------------------------------------------------------------------------
126 // Constructors & Destructors
127 //------------------------------------------------------------------------------------------------------------
130 wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
131 wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
133 ~wxContourMainFrame();
135 //------------------------------------------------------------------------------------------------------------
136 // Creational and initialization methods
137 //------------------------------------------------------------------------------------------------------------
139 void setVectImages(std::vector<vtkImageData*> imgs);
141 bool configurePanels( );
143 bool addNewPanel(wxPanel* panel);
145 wxAuiNotebook * createNotebook();
147 void createInstantChooserPanel(wxAuiNotebook * parent);
149 void createViewPanel(wxAuiNotebook * parent);
151 void createInstantChooserPanel(wxWindow * parent);
153 void createViewPanel(wxWindow * parent);
155 void setInstantChooserPanel( wxInstantChooserPanel * theInstantChooserPanel );
157 void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
159 void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
161 void ShowToolsPanel(bool show);
164 ////------------------------------------------------------------------------------------------------------------
165 //// Methods for capturing events
166 ////------------------------------------------------------------------------------------------------------------
169 ////------------------------------------------------------------------------------------------------------------
170 //// Model management methods
171 ////------------------------------------------------------------------------------------------------------------
174 //------------------------------------------------------------------------------------------------------------
175 // Attributes getters and setters
176 //------------------------------------------------------------------------------------------------------------
177 static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
178 static wxContourMainFrame* getInstance();
179 static void resetInstance();
181 //------------------------------------------------------------------------------------------------------------
182 // Other functional methods
183 //------------------------------------------------------------------------------------------------------------
186 ** This method returns the vector of images selected by the user
187 ** return value std::vector<vtkImageData*>
189 std::vector<vtkImageData*> getVectImages();
192 ** This methods connect the event in the class interfMainPanel with the world of the appli
194 void onCreateContourSpline( );
195 void onCreateContourRectangle( );
196 void onCreateContourCircle( );
197 void onCreateContourLine( );
198 void onCreateContourPoints( );
199 void onCreateContourPolygon( );
200 void onCreateContourBullEye(wxPanel* pan);
201 /////////////////////////////////
202 void onDeleteContour();
203 void deleteContours( std::vector<std::string> keyNamesVector );
204 void deleteContour( std::string theKeyName );
205 void onDeleteContoursActSlice();
206 void onDeleteAllContours();
207 void deleteAllContours();
208 void setConceptValue( std::string name, int value );
209 ConceptDataWrap* getLastConceptData();
210 bool getIfConceptCheckedAt( std::string name, int pos );
212 void changeInstant();
214 int getNamesWrappingSize();
216 std::string getNameWrapping(int i);
218 void updateInstantOutlines();
219 void updateInstantImageData();
220 void updateInstantAxes();
222 void onChangeDeep(int val);
224 ///////////////////////////
229 void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
230 void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
231 ///////////////////////7
236 void openContours( FILE *pFile, FILE *pFileData, bool staticContour );
238 void RefreshInterface();
240 vtkImageData* getImageData();
242 void onSegmentationOneSlice(int isovalue,int sampling,int method);
243 void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
244 void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
245 void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
246 void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
247 int GetImageDataSizeZ();
248 void GetImageDataRange(double *range);
249 void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
252 void referenceLine();
255 void refLineChangeWidth(int width);
261 void FlipContours(int typeContourFlip, int flipDirection);
262 void FlipSelectedContours(int flipDirection);
263 void FlipActualSliceContours(int flipDirection);
264 void FlipAllContours(int flipDirection);
265 void FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection);
268 //====================================================================================================
270 void showAxis(bool show);
271 void onRigidPressed();
272 void onWidthOfContour(double width);
273 int getColorWindow();
274 int getWindowLevel();
275 void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
276 void onInterpolation(bool interpolate);
277 void onChangeInstant(std::string name,int actual);
280 void onSpreadAddAll();
281 void onSpreadGo(int type);
282 void getInstantVector(std::vector<int>& tempVector);
283 std::vector<std::string> getOutlinesName(int slide);
287 // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
289 void onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
290 void onSaveResults(std::string directory,std::string namefile, std::string filename,
291 int typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
292 void SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
293 void onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
294 void onSnakePressed();
295 void saveFileWithContoursAutomatique();
296 void ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
297 wxPanel *getMaskImageViewPanel(wxWindow *parent);
298 void SetContourGroup(int contourGroup);
299 wxPanel *getThresholdImageViewPanel(wxWindow *parent);
300 wxPanel *getColorLayerImageViewPanel(wxWindow *parent);
303 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
306 * Associates the String parameter with the contour
307 * @param label Label entered by the user
308 * @param manualBaseModel Currently selected contour
310 void onPrintLabel (wxString label, manualBaseModel* manualModel);
313 * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
314 * @param manualBaseModel Currently selected contour
316 void onInsertCalculation(manualBaseModel* manualModel);
319 * Assigns and returns the value of a pixel in millimeters
320 @ param value Measure of the pixel in millimeters
322 double onePixelSize(double value);
325 * Returns the type of the currently selected contour
330 * Returns the size in pixels of the currently selected contour
332 double getContourSizeInPixels();
335 * Returns the currently selected contour. If no contour is selected returns NULL
337 manualBaseModel* getContour();
340 * Returns the Path of the data persistence file
342 std::string GetFileLocation();
345 * Assign a new path to the data persistence file
346 @ param newFileLocation New path of the file
348 void SetFileLocation(std::string newFileLocation);
349 //------------------------------------------------------------------------------------------------------------
351 void SetScalarRange(int grayRangeMin, int grayRangeMax);
353 //------------------------------------------------------------------------------------------------------------
356 //------------------------------------------------------------------------------------------------------------
358 //------------------------------------------------------------------------------------------------------------
361 //------------------------------------------------------------------------------------------------------------
363 //------------------------------------------------------------------------------------------------------------
366 static wxContourMainFrame *instance;
367 KernelManagerContour *kernelManager;
368 interfMainPanel *_pannew;
369 PerformingOperation *_performingOperation;
370 std::string _datadir;
371 wxContourViewPanel *_theViewPanel;
372 wxInstantChooserPanel *_instantPanel;
374 //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
375 manualLineControler *_refLineControl;
376 manualContourModelLine *_refLineModel;
377 manualViewLine *_refLineView;
380 wxAuiNotebook *notebook;
381 long m_notebook_style;
382 long m_notebook_theme;
383 int _numberOfVariablesStatistics;
385 // Contour Image Mask
386 ThresholdImageView *_viewMaskImage;
387 ThresholdImageViewPanel *_viewMaskImagePanel;
390 ThresholdImageView *_viewThresholdImage;
391 ThresholdImageViewPanel *_viewThresholdImagePanel;
394 ColorLayerImageViewPanel *_viewColorLayerImagePanel;
395 std::vector<vtkImageData*> _images;
398 // temporary variables readding .roi file
399 int _tmpReadFileImageDim[3];
400 double _tmpReadFileImageSpac[3];
401 int _tmpReadFileTypeOfTransformation;
402 void readDimSpc(FILE *pFile, bool interactiveOption);
405 /*DECLARE_CLASS(wxContourMainFrame)
406 // any class wishing to process wxWindows events must use this macro
407 DECLARE_EVENT_TABLE()*/
408 bool _creatingContoursActive;
409 ////////JCP 21 - 11 - 08
410 void createContour( int typeContour );
411 //manualContourModel * factoryManualContourModel(int typeContour);
412 manualBaseModel * factoryManualContourModel(wxPanel* panel);
413 ContourExtractData *_contourextractdata;
416 void loadState(std::string filename);
418 // void loadContours( FILE *pFile, bool staticContour );
420 void saveFileWithContours( std::string filename );
421 void onLoadContours(std::string fileNameContourROI, bool interactiveInterface);
422 void SetZForAllContours(int pz);
426 std::string stundoredo;
429 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
431 wxPanel *calibrationPanel;
432 wxPanel *calibrationPanelError;
433 double _onePixelSize;
434 std::string _imageLocation;
435 std::string _fileLocation;
436 //------------------------------------------------------------------------------------------------------------