lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.h

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 #ifndef __wxContourMainFrame_h_INCLUDED_H__
  27 #define __wxContourMainFrame_h_INCLUDED_H__
  28
  29
  30 // -----------------------------------------------------------------------------------------------------------
  31 // WX headers inclusion.
  32 // For compilers that support precompilation, includes <wx/wx.h>.
  33 // -----------------------------------------------------------------------------------------------------------
  34
  35 #include <wx/wxprec.h>
  36 #ifdef __BORLANDC__
  37 #pragma hdrstop
  38 #endif
  39 #ifndef WX_PRECOMP
  40 #include <wx/wx.h>
  41 #endif
  42
  43
  44 //------------------------------------------------------------------------------------------------------------
  45 // Includes
  46 //------------------------------------------------------------------------------------------------------------
  47 #include "wx/aui/aui.h"
  48
  49 #include "interfMainPanel.h"
  50 #include "KernelManagerContour.h"
  51
  52 //#include "wxVtkBaseView_SceneManager.h"
  53 #include "wxInstantChooserPanel.h"
  54 #include "wxContourViewPanel.h"
  55
  56 //#include "ContourWorkspace.h"
  57 #include "ContourExtractData.h"
  58 #include "PerformingOperation.h"
  59
  60 #include "manualLineControler.h"
  61 #include "manualContourModelLine.h"
  62 #include "manualViewLine.h"
  63
  64 #include "ThresholdImageView.h"
  65 #include "ThresholdImageViewPanel.h"
  66 #include "ColorLayerImageView.h"
  67 #include "ColorLayerImageViewPanel.h"
  68
  69
  70 //ITK
  71 #include "itkImage.h"
  72 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
  73
  74 #include "itkCurvatureAnisotropicDiffusionImageFilter.h"
  75 #include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
  76 #include "itkSigmoidImageFilter.h"
  77 #include "itkFastMarchingImageFilter.h"
  78 #include "itkRescaleIntensityImageFilter.h"
  79 #include "itkBinaryThresholdImageFilter.h"
  80 #include "itkZeroCrossingImageFilter.h"
  81 #include "itkCastImageFilter.h"
  82
  83 //EED10JUIN2011  #include "itkImageFileWriter.h"
  84
  85 //EED2020-03-18
  86 #undef Success
  87
  88 #include "itkImageToVTKImageFilter.h"
  89 #include "itkVTKImageToImageFilter.h"
  90
  91 //VTK
  92 #include <vtkImageSeedConnectivity.h>
  93 #include <vtkImageMarchingCubes.h>
  94 #include "vtkContourFilter.h"
  95 #include "vtkMarchingContourFilter.h"
  96 #include "vtkPolyDataConnectivityFilter.h"
  97 #include "vtkCleanPolyData.h"
  98 #include "vtkImageReslice.h"
  99 #include "vtkMetaImageWriter.h"
 100 #include "vtkImageData.h"
 101 #include "vtkTransform.h"
 102 #include "vtkCamera.h"
 103 #include "vtkImageActor.h"
 104 #include <vtkImageMapToColors.h>
 105 #include <vtkLookupTable.h>
 106 #include <vtkCommand.h>
 107
 108 //#include "vtkMetaImageReader.h"
 109
 110 //------------------------------------------------------------------------------------------------------------
 111 // Events declaration
 112 //------------------------------------------------------------------------------------------------------------
 113
 114 //BEGIN_DECLARE_EVENT_TYPES()
 115 //END_DECLARE_EVENT_TYPES()
 116
 117 /** file wxContourMainFrame.h */
 118
 119
 120 //------------------------------------------------------------------------------------------------------------
 121 // Class definition
 122 //------------------------------------------------------------------------------------------------------------
 123 class interfMainPanel;
 124 class wxContourMainFrame : public wxPanel {
 125         public:
 126         //------------------------------------------------------------------------------------------------------------
 127         // Constructors & Destructors
 128         //------------------------------------------------------------------------------------------------------------
 129         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
 130         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 131         ~wxContourMainFrame();
 132         //------------------------------------------------------------------------------------------------------------
 133         // Creational and initialization methods
 134         //------------------------------------------------------------------------------------------------------------
 135         void setVectImages(std::vector<vtkImageData*> imgs);
 136         bool configurePanels( );
 137         bool addNewPanel(wxPanel* panel);
 138         wxAuiNotebook * createNotebook();
 139         void createInstantChooserPanel(wxAuiNotebook * parent);
 140         void createViewPanel(wxAuiNotebook * parent);
 141         void createInstantChooserPanel(wxWindow * parent);
 142         void createViewPanel(wxWindow * parent);
 143         void setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel );
 144         void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
 145         void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
 146         void ShowToolsPanel(bool show);
 147         ////------------------------------------------------------------------------------------------------------------
 148         //// Methods for capturing events
 149         ////------------------------------------------------------------------------------------------------------------
 150
 151         ////------------------------------------------------------------------------------------------------------------
 152         ////  Model management methods
 153         ////------------------------------------------------------------------------------------------------------------
 154
 155         //------------------------------------------------------------------------------------------------------------
 156         //  Attributes getters and setters
 157         //------------------------------------------------------------------------------------------------------------
 158         static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 159         static wxContourMainFrame* getInstance();
 160         static void resetInstance();
 161
 162         //------------------------------------------------------------------------------------------------------------
 163         //  Other functional methods
 164         //------------------------------------------------------------------------------------------------------------
 165
 166         /*
 167         ** This method returns the vector of images selected by the user
 168         **      return value std::vector<vtkImageData*>
 169         */
 170         std::vector<vtkImageData*> getVectImages();
 171
 172         /**
 173         **      This methods connect the event in the class interfMainPanel with the world of the appli
 174         **/
 175         void onCreateContourSpline( );
 176         void onCreateContourRectangle( );
 177         void onCreateContourCircle( );
 178         void onCreateContourLine( );
 179         void onCreateContourPoints( );
 180         void onCreateContourPolygon( );
 181         void onCreateContourBullEye(wxPanel* pan);
 182         /////////////////////////////////
 183         void onDeleteContour();
 184         void deleteContours( std::vector<std::string>  keyNamesVector );
 185         void deleteContour( std::string theKeyName );
 186         void onDeleteContoursActSlice();
 187         void onDeleteAllContours();
 188         void deleteAllContours();
 189         void setConceptValue( std::string name, int value );
 190         ConceptDataWrap* getLastConceptData();
 191         bool getIfConceptCheckedAt( std::string name, int pos );
 192         void changeInstant();
 193         int getNamesWrappingSize();
 194         std::string getNameWrapping(int i);
 195         void updateInstantOutlines();
 196         void updateInstantImageData();
 197         void updateInstantAxes();
 198         void onChangeDeep(int val);
 199 ///////////////////////////
 200         void onCopy();
 201         void onPaste();
 202         void onUndo();
 203         void onRedo();
 204         void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 205         void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 206 ///////////////////////7
 207         void onLoad();
 208         void onSave();
 209         void onImport();
 210         void onTest();
 211         void openContours( FILE *pFile, FILE *pFileData, bool staticContour );
 212         void RefreshInterface();
 213         vtkImageData* getImageData();
 214         void onSegmentationOneSlice(int isovalue,int sampling,int method);
 215         void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 216         void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
 217         void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 218         void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
 219         int  GetImageDataSizeZ();
 220         void GetImageDataRange(double *range);
 221         void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
 222
 223         //AD
 224         void referenceLine();
 225         void refLineHide();
 226         void refLineShow();
 227         void refLineChangeWidth(int width);
 228
 229         //AD
 230         void onMirror();
 231
 232         //EED
 233         void FlipContours(int typeContourFlip, int flipDirection);
 234         void FlipSelectedContours(int flipDirection);
 235         void FlipActualSliceContours(int flipDirection);
 236         void FlipAllContours(int flipDirection);
 237         void FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection);
 238
 239 //====================================================================================================
 240
 241         void showAxis(bool show);
 242         void onRigidPressed();
 243         void onWidthOfContour(double width);
 244         int getColorWindow();
 245         int getWindowLevel();
 246         void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
 247         void onInterpolation(bool interpolate);
 248         void onShowTextContour(bool show);
 249         void onBeforeAfterContour(bool before, bool after);
 250         void onJumpSlice(int step,int shift);
 251         void onChangeInstant(std::string name,int actual);
 252         void resetAppend();
 253         void onSpreadAdd();
 254         void onSpreadAddAll();
 255         void onSpreadGo(int type);
 256         void getInstantVector(std::vector<int>& tempVector);
 257         std::vector<std::string> getOutlinesName(int slide);
 258
 259         //
 260         //
 261         // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
 262         //
 263         void    onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
 264         void    onSaveResults(std::string directory,std::string namefile, std::string filename,
 265         int     typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
 266         void    SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
 267         void    onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
 268         void    onSnakePressed();
 269         void    saveFileWithContoursAutomatique();
 270         void    ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
 271         wxPanel *getMaskImageViewPanel(wxWindow *parent);
 272         void    SetContourGroup(int contourGroup);
 273         wxPanel *getThresholdImageViewPanel(wxWindow *parent);
 274         wxPanel *getColorLayerImageViewPanel(wxWindow *parent);
 275         void    SetColorLayerImage(vtkImageData*);
 276
 277 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 278
 279         /**
 280         * Associates the String parameter with the contour
 281         * @param label Label entered by the user
 282         * @param manualBaseModel Currently selected contour
 283         */
 284         void onPrintLabel (wxString label, manualBaseModel* manualModel);
 285
 286         /**
 287         * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
 288         * @param manualBaseModel Currently selected contour
 289         */
 290         void onInsertCalculation(manualBaseModel* manualModel);
 291
 292         /**
 293         * Assigns and returns the value of a pixel in millimeters
 294         @ param value Measure of the pixel in millimeters
 295         */
 296         double onePixelSize(double value);
 297
 298         /**
 299         * Returns the type of the currently selected contour
 300         */
 301         int getType();
 302
 303         /**
 304         * Returns the size in pixels of the currently selected contour
 305         */
 306         double getContourSizeInPixels();
 307
 308         /**
 309         * Returns the currently selected contour. If no contour is selected returns NULL
 310         */
 311         manualBaseModel* getContour();
 312
 313         /**
 314         * Returns the Path of the data persistence file
 315         */
 316         std::string GetFileLocation();
 317
 318         /**
 319         * Assign a new path to the data persistence file
 320         @ param newFileLocation New path of the file
 321         */
 322         void SetFileLocation(std::string newFileLocation);
 323 //------------------------------------------------------------------------------------------------------------
 324
 325         void SetScalarRange(int grayRangeMin, int grayRangeMax);
 326         std::string GetStringTypeImage( vtkImageData* image);
 327
 328 //------------------------------------------------------------------------------------------------------------
 329
 330         void SetXY(int x,int y);
 331
 332
 333 private:
 334         //------------------------------------------------------------------------------------------------------------
 335         //  Private methods
 336         //------------------------------------------------------------------------------------------------------------
 337
 338
 339         //------------------------------------------------------------------------------------------------------------
 340         // Attributtes
 341         //------------------------------------------------------------------------------------------------------------
 342
 343         int                                             _contourGroup;
 344         static wxContourMainFrame   *instance;
 345         KernelManagerContour        *kernelManager;
 346         interfMainPanel             *_pannew;
 347         PerformingOperation         *_performingOperation;
 348         std::string                 _datadir;
 349         wxContourViewPanel          *_theViewPanel;
 350         wxInstantChooserPanel       *_instantPanel;
 351
 352         //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
 353         manualLineControler         *_refLineControl;
 354         manualContourModelLine      *_refLineModel;
 355         manualViewLine              *_refLineView;
 356
 357         wxAuiManager                m_mgr;
 358         wxAuiNotebook               *notebook;
 359     long                                                m_notebook_style;
 360     long                        m_notebook_theme;
 361     int                          _numberOfVariablesStatistics;
 362
 363         // Contour Image Mask
 364         ThresholdImageView                      *_viewMaskImage;
 365         ThresholdImageViewPanel         *_viewMaskImagePanel;
 366
 367         // Threshold Image
 368         ThresholdImageView                      *_viewThresholdImage;
 369         ThresholdImageViewPanel         *_viewThresholdImagePanel;
 370
 371         // Color Layer Image
 372         ColorLayerImageViewPanel        *_viewColorLayerImagePanel;
 373         std::vector<vtkImageData*>  _images;
 374         bool                        _actorPresent;
 375
 376     // temporary variables readding .roi file
 377     int                                 _tmpReadFileImageDim[3];
 378         double                                  _tmpReadFileImageSpac[3];
 379     int                                 _tmpReadFileTypeOfTransformation;
 380     void readDimSpc(FILE *pFile, bool interactiveOption);
 381
 382
 383         /*DECLARE_CLASS(wxContourMainFrame)
 384         // any class wishing to process wxWindows events must use this macro
 385         DECLARE_EVENT_TABLE()*/
 386         bool                        _creatingContoursActive;
 387 ////////JCP 21 - 11 - 08
 388         void createContour( int typeContour );
 389         //manualContourModel * factoryManualContourModel(int typeContour);
 390         manualBaseModel * factoryManualContourModel(wxPanel* panel);
 391         ContourExtractData              *_contourextractdata;
 392
 393         void saveState();
 394         void loadState(std::string filename);
 395
 396 //      void loadContours( FILE *pFile, bool staticContour );
 397
 398         void saveFileWithContours( std::string filename );
 399         void onLoadContours(std::string fileNameContourROI, bool interactiveInterface);
 400         void SetZForAllContours(int pz);
 401
 402         int                         inredo;
 403         int                         inundo;
 404         std::string                     stundoredo;
 405         static char                 COPY;
 406
 407 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 408         wxWindow                    *infoWin2;
 409         wxPanel                     *calibrationPanel;
 410         wxPanel                     *calibrationPanelError;
 411         double                      _onePixelSize;
 412         std::string                 _imageLocation;
 413         std::string                 _fileLocation;
 414 //------------------------------------------------------------------------------------------------------------
 415
 416         wxFrame                                         *_frameShowResultImages;
 417
 418 };
 419
 420 #endif