lib/Interface_ManagerContour_NDimensions/wxContourMainFrame.h

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 #ifndef __wxContourMainFrame_h_INCLUDED_H__
  27 #define __wxContourMainFrame_h_INCLUDED_H__
  28
  29
  30 // -----------------------------------------------------------------------------------------------------------
  31 // WX headers inclusion.
  32 // For compilers that support precompilation, includes <wx/wx.h>.
  33 // -----------------------------------------------------------------------------------------------------------
  34
  35 #include <wx/wxprec.h>
  36 #ifdef __BORLANDC__
  37 #pragma hdrstop
  38 #endif
  39 #ifndef WX_PRECOMP
  40 #include <wx/wx.h>
  41 #endif
  42
  43
  44 //------------------------------------------------------------------------------------------------------------
  45 // Includes
  46 //------------------------------------------------------------------------------------------------------------
  47 #include "wx/aui/aui.h"
  48
  49 #include "interfMainPanel.h"
  50 #include "KernelManagerContour.h"
  51
  52 //#include "wxVtkBaseView_SceneManager.h"
  53 #include "wxInstantChooserPanel.h"
  54 #include "wxContourViewPanel.h"
  55
  56 //#include "ContourWorkspace.h"
  57 #include "ContourExtractData.h"
  58 #include "PerformingOperation.h"
  59
  60 #include "manualLineControler.h"
  61 #include "manualContourModelLine.h"
  62 #include "manualViewLine.h"
  63
  64 #include "ThresholdImageView.h"
  65 #include "ThresholdImageViewPanel.h"
  66 #include "ColorLayerImageView.h"
  67 #include "ColorLayerImageViewPanel.h"
  68
  69
  70 //ITK
  71 #include "itkImage.h"
  72 #include "itkGeodesicActiveContourLevelSetImageFilter.h"
  73
  74 #include "itkCurvatureAnisotropicDiffusionImageFilter.h"
  75 #include "itkGradientMagnitudeRecursiveGaussianImageFilter.h"
  76 #include "itkSigmoidImageFilter.h"
  77 #include "itkFastMarchingImageFilter.h"
  78 #include "itkRescaleIntensityImageFilter.h"
  79 #include "itkBinaryThresholdImageFilter.h"
  80 #include "itkZeroCrossingImageFilter.h"
  81 #include "itkCastImageFilter.h"
  82
  83 //EED10JUIN2011  #include "itkImageFileWriter.h"
  84
  85 #include "itkImageToVTKImageFilter.h"
  86 #include "itkVTKImageToImageFilter.h"
  87
  88 //VTK
  89 #include <vtkImageSeedConnectivity.h>
  90 #include <vtkImageMarchingCubes.h>
  91 #include "vtkContourFilter.h"
  92 #include "vtkMarchingContourFilter.h"
  93 #include "vtkPolyDataConnectivityFilter.h"
  94 #include "vtkCleanPolyData.h"
  95 #include "vtkImageReslice.h"
  96 #include "vtkMetaImageWriter.h"
  97 #include "vtkImageData.h"
  98 #include "vtkTransform.h"
  99 #include "vtkCamera.h"
 100 #include "vtkImageActor.h"
 101 #include <vtkImageMapToColors.h>
 102 #include <vtkLookupTable.h>
 103 #include <vtkCommand.h>
 104
 105 //#include "vtkMetaImageReader.h"
 106
 107 //------------------------------------------------------------------------------------------------------------
 108 // Events declaration
 109 //------------------------------------------------------------------------------------------------------------
 110
 111 //BEGIN_DECLARE_EVENT_TYPES()
 112 //END_DECLARE_EVENT_TYPES()
 113
 114 /** file wxContourMainFrame.h */
 115
 116
 117 //------------------------------------------------------------------------------------------------------------
 118 // Class definition
 119 //------------------------------------------------------------------------------------------------------------
 120 class interfMainPanel;
 121 class wxContourMainFrame : public wxPanel {
 122
 123         public:
 124
 125         //------------------------------------------------------------------------------------------------------------
 126         // Constructors & Destructors
 127         //------------------------------------------------------------------------------------------------------------
 128
 129
 130         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER);
 131         wxContourMainFrame(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER,std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 132
 133         ~wxContourMainFrame();
 134
 135         //------------------------------------------------------------------------------------------------------------
 136         // Creational and initialization methods
 137         //------------------------------------------------------------------------------------------------------------
 138
 139         void setVectImages(std::vector<vtkImageData*> imgs);
 140
 141         bool configurePanels( );
 142
 143         bool addNewPanel(wxPanel* panel);
 144
 145         wxAuiNotebook * createNotebook();
 146
 147         void createInstantChooserPanel(wxAuiNotebook * parent);
 148
 149         void createViewPanel(wxAuiNotebook * parent);
 150
 151         void createInstantChooserPanel(wxWindow * parent);
 152
 153         void createViewPanel(wxWindow * parent);
 154
 155         void setInstantChooserPanel(  wxInstantChooserPanel * theInstantChooserPanel );
 156
 157         void getMaskValue(vtkImageData ** mask,vtkImageData ** value,int typeContourGroup, int selection, int minZ, int maxZ);
 158
 159         void SaveImageResult(std::string directory,std::string namefile, vtkImageData* mask,vtkImageData* value);
 160
 161         void ShowToolsPanel(bool show);
 162
 163
 164         ////------------------------------------------------------------------------------------------------------------
 165         //// Methods for capturing events
 166         ////------------------------------------------------------------------------------------------------------------
 167
 168
 169         ////------------------------------------------------------------------------------------------------------------
 170         ////  Model management methods
 171         ////------------------------------------------------------------------------------------------------------------
 172
 173
 174         //------------------------------------------------------------------------------------------------------------
 175         //  Attributes getters and setters
 176         //------------------------------------------------------------------------------------------------------------
 177         static wxContourMainFrame* getInstance(wxWindow* parent, wxWindowID id,const wxString& title,const wxPoint& pos,const wxSize& size,std::vector<vtkImageData*> images, long style  = wxDEFAULT_FRAME_STYLE | wxSUNKEN_BORDER, std::string datadir="C:/Creatis/creaContoursBin/RelWithDebInfo/");
 178         static wxContourMainFrame* getInstance();
 179         static void resetInstance();
 180
 181         //------------------------------------------------------------------------------------------------------------
 182         //  Other functional methods
 183         //------------------------------------------------------------------------------------------------------------
 184
 185         /*
 186         ** This method returns the vector of images selected by the user
 187         **      return value std::vector<vtkImageData*>
 188         */
 189         std::vector<vtkImageData*> getVectImages();
 190
 191         /**
 192         **      This methods connect the event in the class interfMainPanel with the world of the appli
 193         **/
 194         void onCreateContourSpline( );
 195         void onCreateContourRectangle( );
 196         void onCreateContourCircle( );
 197         void onCreateContourLine( );
 198         void onCreateContourPoints( );
 199         void onCreateContourPolygon( );
 200         void onCreateContourBullEye(wxPanel* pan);
 201         /////////////////////////////////
 202         void onDeleteContour();
 203         void deleteContours( std::vector<std::string>  keyNamesVector );
 204         void deleteContour( std::string theKeyName );
 205         void onDeleteContoursActSlice();
 206         void onDeleteAllContours();
 207         void deleteAllContours();
 208         void setConceptValue( std::string name, int value );
 209         ConceptDataWrap* getLastConceptData();
 210         bool getIfConceptCheckedAt( std::string name, int pos );
 211         void changeInstant();
 212         int getNamesWrappingSize();
 213         std::string getNameWrapping(int i);
 214         void updateInstantOutlines();
 215         void updateInstantImageData();
 216         void updateInstantAxes();
 217         void onChangeDeep(int val);
 218 ///////////////////////////
 219         void onCopy();
 220         void onPaste();
 221         void onUndo();
 222         void onRedo();
 223         void createCopyContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 224         void createMirrorContourOf ( std::string anExistingKName, std::vector<int> &instantNoTouchData, bool append );
 225 ///////////////////////7
 226         void onLoad();
 227         void onSave();
 228         void onImport();
 229         void onTest();
 230         void openContours( FILE *pFile, FILE *pFileData, bool staticContour );
 231         void RefreshInterface();
 232         vtkImageData* getImageData();
 233         void onSegmentationOneSlice(int isovalue,int sampling,int method);
 234         void onSegmentationOneSliceITK(wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 235         void SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method );
 236         void SegmentationOneSliceITK(int x, int y, int z, wxString distance, wxString sigma, wxString alfa, wxString beta, wxString propagation, wxString iterations, wxString inflation);
 237         void Mirror( int x, int y, int z, int isovalue, int sampling, int method );
 238         int  GetImageDataSizeZ();
 239         void GetImageDataRange(double *range);
 240         void onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method);
 241
 242         //AD
 243         void referenceLine();
 244         void refLineHide();
 245         void refLineShow();
 246         void refLineChangeWidth(int width);
 247
 248         //AD
 249         void onMirror();
 250
 251         //EED
 252         void FlipContours(int typeContourFlip, int flipDirection);
 253         void FlipSelectedContours(int flipDirection);
 254         void FlipActualSliceContours(int flipDirection);
 255         void FlipAllContours(int flipDirection);
 256         void FlipLstOfContours(std::vector<std::string> lstNameThings, int flipDirection);
 257
 258 //====================================================================================================
 259
 260         void showAxis(bool show);
 261         void onRigidPressed();
 262         void onWidthOfContour(double width);
 263         int getColorWindow();
 264         int getWindowLevel();
 265         void onBrigthnessColorWindowLevel(int colorwindow,int windowlevel);
 266         void onInterpolation(bool interpolate);
 267         void onShowTextContour(bool show);
 268         void onBeforeAfterContour(bool before, bool after);
 269         void onJumpSlice(int step,int shift);
 270         void onChangeInstant(std::string name,int actual);
 271         void resetAppend();
 272         void onSpreadAdd();
 273         void onSpreadAddAll();
 274         void onSpreadGo(int type);
 275         void getInstantVector(std::vector<int>& tempVector);
 276         std::vector<std::string> getOutlinesName(int slide);
 277
 278         //
 279         //
 280         // @param typeContourGroup - int The operation id (AND,OR,XOR,ALL=3)
 281         //
 282         void    onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ,int grayRangeMin, int grayRangeMax);
 283         void    onSaveResults(std::string directory,std::string namefile, std::string filename,
 284         int     typeContourGroup, int selection, int minZ, int maxZ, bool XYZValues, bool contourImage, bool statistics);
 285         void    SaveValuesXYZ(std::string directory,std::string namefile, int typeContourGroup);
 286         void    onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow);
 287         void    onSnakePressed();
 288         void    saveFileWithContoursAutomatique();
 289         void    ShowResultImages(int typeContourGroup, int selection, int minZ, int maxZ );
 290         wxPanel *getMaskImageViewPanel(wxWindow *parent);
 291         void    SetContourGroup(int contourGroup);
 292         wxPanel *getThresholdImageViewPanel(wxWindow *parent);
 293         wxPanel *getColorLayerImageViewPanel(wxWindow *parent);
 294
 295 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 296
 297         /**
 298         * Associates the String parameter with the contour
 299         * @param label Label entered by the user
 300         * @param manualBaseModel Currently selected contour
 301         */
 302         void onPrintLabel (wxString label, manualBaseModel* manualModel);
 303
 304         /**
 305         * Calculates the size of the contour received as a parameter. Uses the measure of a pixel in millimeters.
 306         * @param manualBaseModel Currently selected contour
 307         */
 308         void onInsertCalculation(manualBaseModel* manualModel);
 309
 310         /**
 311         * Assigns and returns the value of a pixel in millimeters
 312         @ param value Measure of the pixel in millimeters
 313         */
 314         double onePixelSize(double value);
 315
 316         /**
 317         * Returns the type of the currently selected contour
 318         */
 319         int getType();
 320
 321         /**
 322         * Returns the size in pixels of the currently selected contour
 323         */
 324         double getContourSizeInPixels();
 325
 326         /**
 327         * Returns the currently selected contour. If no contour is selected returns NULL
 328         */
 329         manualBaseModel* getContour();
 330
 331         /**
 332         * Returns the Path of the data persistence file
 333         */
 334         std::string GetFileLocation();
 335
 336         /**
 337         * Assign a new path to the data persistence file
 338         @ param newFileLocation New path of the file
 339         */
 340         void SetFileLocation(std::string newFileLocation);
 341 //------------------------------------------------------------------------------------------------------------
 342
 343         void SetScalarRange(int grayRangeMin, int grayRangeMax);
 344         std::string GetStringTypeImage( vtkImageData* image);
 345
 346 //------------------------------------------------------------------------------------------------------------
 347
 348         void SetXY(int x,int y);
 349
 350
 351 private:
 352         //------------------------------------------------------------------------------------------------------------
 353         //  Private methods
 354         //------------------------------------------------------------------------------------------------------------
 355
 356
 357         //------------------------------------------------------------------------------------------------------------
 358         // Attributtes
 359         //------------------------------------------------------------------------------------------------------------
 360
 361         int _contourGroup;
 362         static wxContourMainFrame   *instance;
 363         KernelManagerContour        *kernelManager;
 364         interfMainPanel             *_pannew;
 365         PerformingOperation         *_performingOperation;
 366         std::string                 _datadir;
 367         wxContourViewPanel          *_theViewPanel;
 368         wxInstantChooserPanel       *_instantPanel;
 369
 370         //AD: 03-09: This attributes represents the reference line that is going to be used for the mirroring
 371         manualLineControler         *_refLineControl;
 372         manualContourModelLine      *_refLineModel;
 373         manualViewLine              *_refLineView;
 374
 375         wxAuiManager                m_mgr;
 376         wxAuiNotebook               *notebook;
 377         long                    m_notebook_style;
 378         long                    m_notebook_theme;
 379         int                      _numberOfVariablesStatistics;
 380
 381         // Contour Image Mask
 382         ThresholdImageView                      *_viewMaskImage;
 383         ThresholdImageViewPanel         *_viewMaskImagePanel;
 384
 385         // Threshold Image
 386         ThresholdImageView                      *_viewThresholdImage;
 387         ThresholdImageViewPanel         *_viewThresholdImagePanel;
 388
 389         // Color Layer Image
 390         ColorLayerImageViewPanel        *_viewColorLayerImagePanel;
 391         std::vector<vtkImageData*>  _images;
 392         bool                        _actorPresent;
 393
 394     // temporary variables readding .roi file
 395     int                                 _tmpReadFileImageDim[3];
 396         double                                  _tmpReadFileImageSpac[3];
 397     int                                 _tmpReadFileTypeOfTransformation;
 398     void readDimSpc(FILE *pFile, bool interactiveOption);
 399
 400
 401         /*DECLARE_CLASS(wxContourMainFrame)
 402         // any class wishing to process wxWindows events must use this macro
 403         DECLARE_EVENT_TABLE()*/
 404         bool                        _creatingContoursActive;
 405 ////////JCP 21 - 11 - 08
 406         void createContour( int typeContour );
 407         //manualContourModel * factoryManualContourModel(int typeContour);
 408         manualBaseModel * factoryManualContourModel(wxPanel* panel);
 409         ContourExtractData              *_contourextractdata;
 410
 411         void saveState();
 412         void loadState(std::string filename);
 413
 414 //      void loadContours( FILE *pFile, bool staticContour );
 415
 416         void saveFileWithContours( std::string filename );
 417         void onLoadContours(std::string fileNameContourROI, bool interactiveInterface);
 418         void SetZForAllContours(int pz);
 419
 420         int                         inredo;
 421         int                         inundo;
 422         std::string                     stundoredo;
 423         static char                 COPY;
 424
 425 //CMRU 17-08-09-----------------------------------------------------------------------------------------------
 426         wxWindow                    *infoWin2;
 427         wxPanel                     *calibrationPanel;
 428         wxPanel                     *calibrationPanelError;
 429         double                      _onePixelSize;
 430         std::string                 _imageLocation;
 431         std::string                 _fileLocation;
 432 //------------------------------------------------------------------------------------------------------------
 433
 434         wxFrame                                         *_frameShowResultImages;
 435
 436 };
 437
 438 #endif