lib/maracasVisuLib/src/interface/wxWindows/Contour/ContourExtractData.cxx

   1
   2 #include "ContourExtractData.h"
   3
   4
   5 //----------------------------------------------------------------------
   6 ContourExtractData::ContourExtractData( bool okImagesResults)
   7 {
   8         this->imagedata                 = NULL;
   9         imagedataValueResult    = NULL;
  10         imagedataMaskResult             = NULL;
  11         this->okImagesResults   = okImagesResults;
  12         _typeOperation                  = 0;
  13 }
  14
  15 // ------------------------------------------------------------------------
  16
  17 ContourExtractData::~ContourExtractData()
  18 {
  19 }
  20
  21
  22 //----------------------------------------------------------------------
  23 void ContourExtractData::SetImage( vtkImageData* imagedata)
  24 {
  25         this->imagedata                 = imagedata;
  26         this->imagedata->GetScalarRange(scalarRange);
  27
  28         // RaC 20-11-09 Changes in InitLstContoursLinesYPoints
  29         int ext[6];
  30         this->imagedata->GetWholeExtent(ext);
  31         _sizeImageY = ext[3]-ext[2]+1;
  32
  33         // init vtk image result : valuesImage maskImage
  34         if (this->okImagesResults==true){  InitVtkImagesResult(); }
  35 }
  36 //----------------------------------------------------------------------
  37 void ContourExtractData::SetZtoBeAnalys( int z )
  38 {
  39         this->zImage                    = z;
  40 }
  41
  42 //------------------------------------------------------------------------
  43 void ContourExtractData::SetLstManualContourModel( std::vector<manualBaseModel*> lstManConMod)
  44 {
  45         this->lstManConMod = lstManConMod;
  46 }
  47
  48
  49 //------------------------------------------------------------------------
  50 void ContourExtractData::GetMinMaxPoint(int *minPoint,
  51                                                                                 int *maxPoint,
  52                                                                                 manualBaseModel *manualcontourmodel
  53                                                                                 )
  54 {
  55         int i;
  56         //int   np              = manualcontourmodel->GetSizeLstPoints( );  // number of control points // JPRx
  57
  58         // JSTG 26-02-08 ---------------------------------------------------------------------------------------
  59         //int nps = manualviewbaseecontour->GetNumberOfPointsSpline(); // number of points in the spline
  60         int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
  61         //------------------------------------------------------------------------------------------------------
  62
  63         // JSTG 26-02-08 ---------------------------------------------------------------------------------------
  64         //double x,y,z,t;
  65         double x,y,z;
  66         //double delta=( double ) ( np  ) / ( double ) ( nps  );
  67         manualcontourmodel->UpdateSpline();
  68         for (i=0; i<nps; i++)
  69         {
  70                 //t= delta * (double)i;
  71                 //manualcontourmodel->GetSplinePoint(t,x,y,z);
  72                 manualcontourmodel->GetSpline_i_Point(i,&x,&y,&z);
  73                 if (x<minPoint[0]){ minPoint[0]=(int)x; }
  74                 if (y<minPoint[1]){ minPoint[1]=(int)y; }
  75                 if (x>maxPoint[0]){ maxPoint[0]=(int)x; }
  76                 if (y>maxPoint[1]){ maxPoint[1]=(int)y; }
  77         }
  78         minPoint[0]--;
  79         minPoint[1]--;
  80         maxPoint[0]++;
  81         maxPoint[1]++;
  82         //------------------------------------------------------------------------------------------------------
  83 }
  84
  85 //------------------------------------------------------------------------
  86 void ContourExtractData::GetMinMaxPoint_Of_LstManConMod(        int *minPoint,
  87                                                                                                                 int *maxPoint
  88                                                                                                                 )
  89
  90 {
  91         int i,size = lstManConMod.size();
  92
  93         for(i=0 ; i<size ; i++)
  94         {
  95                 GetMinMaxPoint(minPoint,maxPoint,lstManConMod[i]);
  96         }
  97 }
  98
  99
 100 //------------------------------------------------------------------------
 101 int ContourExtractData::AnalisisContourInsideV2(int x, int y, int iContour )
 102 {
 103         bool inBorder=false;
 104         int result      = 0;
 105         int i;
 106
 107         int nps=_lstlstlstVecX1[iContour][y].size();
 108
 109         double x1,y1,x2,y2;
 110         double borderX, borderY;
 111         double xx1, yy1,xx2, yy2;
 112         double xx=x, yy=y;
 113         double d;
 114
 115         for (i=0; i<nps; i++)
 116         {
 117                 x1=_lstlstlstVecX1[iContour][y][i];
 118                 y1=_lstlstlstVecY1[iContour][y][i];
 119                 x2=_lstlstlstVecX2[iContour][y][i];
 120                 y2=_lstlstlstVecY2[iContour][y][i];
 121
 122                 borderX=x1;
 123                 borderY=y1;
 124
 125                 if (y1<y2)
 126                 {
 127                         xx1=x1; yy1=y1; xx2=x2; yy2=y2;
 128                 } else {
 129                         xx1=x2; yy1=y2; xx2=x1; yy2=y1;
 130                 }
 131
 132                 double difxx2xx1=fabs(xx2-xx1);
 133                 if (difxx2xx1==0) difxx2xx1=0.0000000001;
 134
 135                 // Finding border looking in vertical direction  AND  verifing if pixel is at right of the line
 136                 if  ( (yy>=yy1)&&(yy<=yy2) )
 137                 {
 138                         //by triangle similarity
 139                         d = ( fabs(xx2-xx1)*(yy-yy1) ) / (yy2-yy1) ;
 140                         if ( (xx1<=xx2)&&(x<(xx1+d)) )  {       result++;       }
 141                         if ( (xx1>xx2)&&(x<(xx1-d)) )   {       result++;       }
 142
 143                         if ( (yy2-yy1)/difxx2xx1 >= 1.0)
 144                         {
 145                                 if (xx1<=xx2)
 146                                 {
 147                                         borderX = xx1+d;
 148                                         borderY = y;
 149                                 } else {
 150                                         borderX = xx1-d;
 151                                         borderY = y;
 152                                 }
 153                         }
 154                 } // if point inside y
 155
 156
 157                 // Finding border looking in vertical direction
 158                 if ( ((xx1<=xx2)&&(xx>=xx1)&&(xx<xx2)) || ((xx1>xx2)&&(xx>=xx2)&&(xx<xx1)) )
 159                 {
 160                         if ( (yy2-yy1)/difxx2xx1 <= 1.0)
 161                         {
 162                                 //by triangle similarity
 163                                 d = ( fabs(xx1-xx)*(yy2-yy1) ) / difxx2xx1;
 164                                 if (yy1+d<=yy2) {
 165                                         borderX=x;
 166                                         borderY=yy1+d;
 167                                 }
 168                         }
 169                 } // if point inside x
 170
 171
 172                 //Border verification
 173                 if (   (x==(int)borderX) && (y==(int)borderY)   )  { inBorder=true; }// if point in border
 174
 175                 // Verification : border in horizontal line
 176                 if ( ((int)y1==(int)y2)  &&  ((int)y1==y) && (x1<x2) && (x>=x1) && (x<=x2))             { inBorder=true;        }
 177                 if ( ((int)y1==(int)y2)  &&  ((int)y1==y) && (x2<x1) && (x>=x2) && (x<=x1))             { inBorder=true;        }
 178
 179                 if (inBorder==true){ i=nps; }
 180         } // for i
 181
 182         if (inBorder==true)     { result=1;     }
 183
 184         return result;
 185 }
 186
 187
 188
 189 //------------------------------------------------------------------------
 190 // typeOperation=0 AND
 191 // typeOperation=1 OR
 192 // typeOperation=2 XOR
 193 bool ContourExtractData::isInside(int x, int y, int typeOperation)
 194 {
 195         bool result                             = false;
 196         int numberLeft                  = 0;
 197         int i,size                              = this->lstManConMod.size();
 198         int numberInside        = 0;
 199
 200         /* RaC 20-11-09 (C1) Changes to use the method without the image.
 201         int ext[6];
 202         imagedata->GetExtent(ext);
 203
 204         if ((x>=0) && (x<=ext[1]) && (y>=0) && (y<=ext[3]))
 205         {
 206         */
 207
 208         if (typeOperation==0)  // AND  Intersection
 209         {
 210                 for (i=0;i<size;i++)
 211                 {
 212                         // To process the statistics of the Points contour the procedure is different
 213                         // RaC 19-09-09
 214                         manualBaseModel *mbm = lstManConMod[i];
 215                         if(mbm->GetTypeModel()==7)
 216                         {
 217                                 if(mbm->IsPoint(x,y)==true)
 218                                 {
 219                                         numberLeft=1;
 220                                 }
 221                         }//if
 222                         else
 223                         {
 224                                 numberLeft =  AnalisisContourInsideV2(x,y, i );
 225                         }//else
 226
 227                         if ( (numberLeft % 2) ==1){         numberInside++;  }
 228                 }
 229                 if ( numberInside == (size) ){ result=true; }
 230         } // AND  Intersection
 231
 232         numberLeft=0;
 233
 234         if (typeOperation==1)  // OR  All
 235         {
 236                 for (i=0;i<size;i++)
 237                 {
 238                         // To process the statistics of the Points contour the procedure is different
 239                         // RaC 19-09-09
 240                         manualBaseModel *mbm = lstManConMod[i];
 241                         if(mbm->GetTypeModel()==7)
 242                         {
 243                                 if(mbm->IsPoint(x,y)==true)
 244                                 {
 245                                         numberLeft=1;
 246                                 }
 247                         }//if
 248                         else
 249                         {
 250                                 numberLeft =  AnalisisContourInsideV2(x,y, i );
 251                         }//else
 252                         if ( (numberLeft % 2) ==1){ result=true;  }
 253                 }
 254         } // OR  All
 255
 256         numberLeft=0;
 257
 258         if (typeOperation==2)  // XOR  crown
 259         {
 260                 for (i=0;i<size;i++)
 261                 {
 262                         // To process the statistics of the Points contour the procedure is different
 263                         // RaC 19-09-09
 264                         manualBaseModel *mbm = lstManConMod[i];
 265                         if(mbm->GetTypeModel()==7)
 266                         {
 267                                 if(mbm->IsPoint(x,y)==true)
 268                                 {
 269                                         numberLeft=1;
 270                                 }
 271                         }//if
 272                         else
 273                         {
 274                                 numberLeft =  numberLeft + AnalisisContourInsideV2(x,y, i );
 275                         }//else
 276
 277                 }
 278                 if ( numberLeft % 2 ==1){       result = true;  }
 279         }// XOR  crown
 280
 281
 282
 283         //RaC }
 284
 285         return result;
 286 }
 287
 288 //------------------------------------------------------------------------
 289
 290 double ContourExtractData::GetDataValue(int x, int y, int z)
 291 {
 292         //      wxVtk2DBaseView *wxvtk2dbaseview = (wxVtk2DBaseView*)wxvtkbaseview;
 293         //      int z = (int)wxvtk2dbaseview->GetVtkBaseData()->GetZ();
 294         //JSTG 13-03-08-----
 295         //EED OJO avec JS       _zz = z;
 296         //------------------
 297         double result;
 298         void *p;
 299         p = imagedata->GetScalarPointer(x,y,z);
 300
 301         if (imagedata->GetScalarType()==VTK_CHAR)
 302         {
 303                 char *pp = (char*)p;
 304                 result = (double)(*pp);
 305         }
 306         else if (imagedata->GetScalarType()==VTK_SIGNED_CHAR)
 307         {
 308                 signed char *pp = (signed char*)p;
 309                 result = (double)(*pp);
 310         }
 311         else if (imagedata->GetScalarType()==VTK_UNSIGNED_CHAR)
 312         {
 313                 unsigned char *pp = (unsigned char*)p;
 314                 result = (double)(*pp);
 315         }
 316         else if (imagedata->GetScalarType()==VTK_SHORT)
 317         {
 318                 short *pp = (short*)p;
 319                 result = (double)(*pp);
 320         }
 321         else if (imagedata->GetScalarType()==VTK_UNSIGNED_SHORT)
 322         {
 323                 unsigned short *pp = (unsigned short*)p;
 324                 result = (double)(*pp);
 325         }
 326         else if (imagedata->GetScalarType()==VTK_INT)
 327         {
 328                 int *pp = (int*)p;
 329                 result = (double)(*pp);
 330         }
 331         else if (imagedata->GetScalarType()==VTK_UNSIGNED_INT)
 332         {
 333                 unsigned int *pp = (unsigned int*)p;
 334                 result = (double)(*pp);
 335         }
 336         else if (imagedata->GetScalarType()==VTK_LONG)
 337         {
 338                 long *pp = (long*)p;
 339                 result = (double)(*pp);
 340         }
 341         else if (imagedata->GetScalarType()==VTK_UNSIGNED_LONG)
 342         {
 343                 unsigned long *pp = (unsigned long*)p;
 344                 result = (double)(*pp);
 345         }
 346         else if (imagedata->GetScalarType()==VTK_FLOAT)
 347         {
 348                 float *pp = (float*)p;
 349                 result = (double)(*pp);
 350         }
 351         else if (imagedata->GetScalarType()==VTK_DOUBLE)
 352         {
 353                 double *pp = (double*)p;
 354                 result = (double)(*pp);
 355         }
 356
 357         return result;
 358 }
 359
 360 //------------------------------------------------------------------------
 361
 362 void ContourExtractData::PutVtkImageDataResultValue( int x, int y, int z, double value )
 363 {
 364         unsigned short *pValue;
 365         unsigned short *pMask;
 366         pValue  = (unsigned short *)imagedataValueResult->GetScalarPointer(x,y,z);
 367         pMask   = (unsigned short *)imagedataMaskResult->GetScalarPointer(x,y,z);
 368         *pMask  = 255;
 369         *pValue = (unsigned short)value;
 370 }
 371
 372 //------------------------------------------------------------------------
 373 void ContourExtractData::ResetImageResult(int z)
 374 {
 375         if (okImagesResults==true)
 376         {
 377                 unsigned short *pValue;
 378                 unsigned short *pMask;
 379                 pValue  = (unsigned short *)imagedataValueResult->GetScalarPointer(0,0,z);
 380                 pMask   = (unsigned short *)imagedataMaskResult->GetScalarPointer(0,0,z);
 381
 382                 int ext[6];
 383                 imagedataValueResult->GetExtent(ext);
 384
 385                 int size = (ext[1]-ext[0]+1) * (ext[3]-ext[2]+1);
 386                 memset(pValue,0,size*2);
 387                 memset(pMask,0,size*2);
 388         } // if
 389 }
 390
 391
 392 //------------------------------------------------------------------------
 393 void ContourExtractData::CalculateImageResult()
 394 {
 395         if (okImagesResults==true)
 396         {
 397                 ResetImageResult(zImage);
 398
 399                 int minPoint[2];
 400                 int maxPoint[2];
 401                 int i,j;
 402                 double value;
 403
 404                 minPoint[0] = 999999;
 405                 minPoint[1] = 999999;
 406                 maxPoint[0] = -999999;
 407                 maxPoint[1] = -999999;
 408
 409                 GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
 410                 InitLstContoursLinesYPoints();
 411
 412                 for (j=minPoint[1]; j<=maxPoint[1]; j++)
 413                 {
 414                         for (i=minPoint[0]; i<=maxPoint[0]; i++)
 415                         {
 416
 417                                 //RaC 20-11-09 Changes specified in isInside (C1)
 418                                 int ext[6];
 419                                 imagedata->GetExtent(ext);
 420
 421                                 if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
 422                                 {
 423                   if (isInside(i,j,_typeOperation)==true)
 424                                         {
 425                                           value = GetDataValue(i,j,zImage);
 426                                           if ( (value>=scalarRange[0]) && (value<=scalarRange[1]) )
 427                                           {
 428                                                 PutVtkImageDataResultValue(i,j,zImage,  value );
 429                                           } // scalarRange
 430                                         } // if isInside
 431
 432                                 } // if ext
 433                         } // for i
 434                 } // for j
 435
 436
 437                 imagedataValueResult->Modified();
 438                 imagedataMaskResult->Modified();
 439                 imagedataValueResult->Update();
 440                 imagedataMaskResult->Update();
 441         } // if
 442
 443 }
 444
 445 //------------------------------------------------------------------------
 446 void ContourExtractData::GetValuesInsideCrown(  int *numberOfPixels,
 447                                                                                                 std::vector<double> *pLstValue,
 448                                                                                                 std::vector<double> *pLstValuePosX,
 449                                                                                                 std::vector<double> *pLstValuePosY,
 450                                                                                                 std::vector<double> *pLstValuePosZ)
 451 {
 452         pLstValue->clear();
 453         pLstValuePosX->clear();
 454         pLstValuePosY->clear();
 455         pLstValuePosZ->clear();
 456
 457         //      if (okImagesResults==true)
 458         //      {
 459         //              ResetImageResult(zImage);
 460         //      }
 461
 462         int minPoint[2];
 463         int maxPoint[2];
 464         int i,j;
 465         double value;
 466         int acum=0;
 467
 468         minPoint[0] = 999999;
 469         minPoint[1] = 999999;
 470         maxPoint[0] = -999999;
 471         maxPoint[1] = -999999;
 472
 473         GetMinMaxPoint_Of_LstManConMod(minPoint,maxPoint);
 474         InitLstContoursLinesYPoints();
 475
 476         for (j=minPoint[1]; j<=maxPoint[1]; j++)
 477         {
 478                 for (i=minPoint[0]; i<=maxPoint[0]; i++)
 479                 {
 480                         //RaC 20-11-09 Changes specified in isInside (C1)
 481                         int ext[6];
 482                         imagedata->GetExtent(ext);
 483
 484                         if ((i>=0) && (i<=ext[1]) && (j>=0) && (j<=ext[3]))
 485                         {
 486                     if (isInside(i,j,_typeOperation)==true)
 487                                 {
 488
 489                                         acum++;
 490                                         value = GetDataValue(i,j,zImage);
 491                                         if ( (value>=scalarRange[0]) && (value<=scalarRange[1]) )
 492                                         {
 493                                                 pLstValue               -> push_back( value );
 494                                                 pLstValuePosX   -> push_back( i );
 495                                                 pLstValuePosY   -> push_back( j );
 496                                                 pLstValuePosZ   -> push_back( -1 );
 497                                         } // scalarRange
 498                                 } // if isInside
 499                         } // if ext
 500                 } // for
 501         } // for
 502
 503         *numberOfPixels = acum;
 504 }
 505
 506 //------------------------------------------------------------------------
 507
 508 vtkImageData *ContourExtractData::GetVtkImageValueResult()
 509 {
 510         return imagedataValueResult;
 511 }
 512 //------------------------------------------------------------------------
 513 vtkImageData *ContourExtractData::GetVtkImageMaskResult()
 514 {
 515         return imagedataMaskResult;
 516 }
 517 // ------------------------------------------------------------------------
 518 void ContourExtractData::InitVtkImagesResult()
 519 {
 520         int ext[6];
 521         int newDim[3];
 522         double spc[3];
 523         int scalartype;
 524
 525         imagedata->GetSpacing(spc);
 526         imagedata->GetExtent(ext);
 527         newDim[0]=ext[1]-ext[0]+1;
 528         newDim[1]=ext[3]-ext[2]+1;
 529         newDim[2]=ext[5]-ext[4]+1;
 530         scalartype = imagedata->GetScalarType();
 531
 532         if (imagedataValueResult!=NULL)
 533         {
 534                 imagedataValueResult->Delete();
 535         }
 536         imagedataValueResult = vtkImageData::New();
 537         //        imagedataValueResult->SetScalarType(scalartype);
 538         imagedataValueResult->SetScalarTypeToUnsignedShort();
 539         imagedataValueResult->SetSpacing(spc);
 540         imagedataValueResult->SetDimensions( newDim );
 541         imagedataValueResult->AllocateScalars();
 542
 543         if (imagedataMaskResult!=NULL)
 544         {
 545                 imagedataMaskResult->Delete();
 546         }
 547         imagedataMaskResult  = vtkImageData::New();
 548         //        imagedataMaskResult->SetScalarType(scalartype);
 549         imagedataMaskResult->SetScalarTypeToUnsignedShort();
 550         imagedataMaskResult->SetSpacing(spc);
 551         imagedataMaskResult->SetDimensions( newDim );
 552         imagedataMaskResult->AllocateScalars();
 553 }
 554
 555
 556 //------------------------------------------------------------------------
 557 void ContourExtractData::InitVolumeStatistics()
 558 {
 559         vol_rCountRange                         = 0;
 560         vol_rsize                                       = 0;
 561         vol_minValue                            = 9999999;
 562         vol_maxValue                            =-9999999;
 563         vol_acum_average                        = 0;
 564         vol_acum_standardeviation       = 0;
 565 }
 566
 567 //------------------------------------------------------------------------
 568 void ContourExtractData::SetVolumeStatistics(int rCountRange,
 569                                                                                          int rsize,
 570                                                                                          double minValue,
 571                                                                                          double maxValue,
 572                                                                                          double acum_average,
 573                                                                                          double acum_standardeviation)
 574 {
 575         vol_rCountRange                         = vol_rCountRange + rCountRange;
 576         vol_rsize                                       = vol_rsize + rsize;
 577
 578         if (minValue<vol_minValue){ vol_minValue = minValue;  }
 579         if (maxValue>vol_maxValue){ vol_maxValue = maxValue;  }
 580
 581         vol_acum_average                        = vol_acum_average + acum_average;
 582         vol_acum_standardeviation       = vol_acum_standardeviation + acum_standardeviation;
 583 }
 584
 585 //------------------------------------------------------------------------
 586 void ContourExtractData::GetVolumeStatistics(int *vol_rCountRange,
 587                                                                                          int *vol_rsize,
 588                                                                                          double *vol_minValue,
 589                                                                                          double *vol_maxValue,
 590                                                                                          double *vol_average,
 591                                                                                          double *vol_standardeviation)
 592 {
 593         *vol_rCountRange                = this->vol_rCountRange;
 594         *vol_rsize                              = this->vol_rsize;
 595         *vol_minValue                   = this->vol_minValue;
 596         *vol_maxValue                   = this->vol_maxValue;
 597         *vol_average                    = this->vol_acum_average / this->vol_rsize;
 598         *vol_standardeviation   = sqrt(this->vol_acum_standardeviation / this->vol_rsize);
 599 }
 600
 601
 602 //------------------------------------------------------------------------
 603 void ContourExtractData::Statistics( std::vector<double> *inputLstValue,
 604                                                                         int     grayRangeMin,
 605                                                                         int     grayRangeMax,
 606                                                                         int             *rCountRange,
 607                                                                         int             *rsize,
 608                                                                         double  *rmin,
 609                                                                         double  *rmax,
 610                                                                         double  *raverage,
 611                                                                         double  *rstandardeviation
 612                                                                         )
 613 {
 614         double min                                              = 0;
 615         double max                                              = 0;
 616         double average                                  = 0;
 617         double standardeviation                 = 0;
 618         double acum_average                             = 0;
 619         double acum_standardeviation            = 0;
 620         int      size                                           = 0;
 621         int      countRange                                     = 0;
 622         double ng;
 623
 624         if (inputLstValue!=NULL)
 625         {
 626                 size=inputLstValue->size();
 627                 if (size>0){
 628                         max=(*inputLstValue)[0];
 629                         min=(*inputLstValue)[0];
 630                         // Average , countRange
 631                         int i;
 632                         for ( i=0; i<size; i++ )
 633                         {
 634                                 ng=(*inputLstValue)[i];
 635                                 acum_average = acum_average + ng;
 636                                 if (max<ng) max=ng;             // Max
 637                                 if (min>ng) min=ng;     // Min
 638                                 if ((ng>=grayRangeMin) && (ng<=grayRangeMax)) countRange++;  // countRange
 639                         } // for average
 640                         average = acum_average / size;
 641
 642                         // Standar Deviation
 643                         acum_standardeviation=0;
 644                         double tmp;
 645                         for ( i=0; i<size; i++ )
 646                         {
 647                                 tmp = (*inputLstValue)[i] - average;
 648                                 acum_standardeviation = acum_standardeviation + tmp*tmp;
 649                         } // for standar deviation
 650                         standardeviation = sqrt(acum_standardeviation/size);
 651                         SetVolumeStatistics(countRange, (*rsize),
 652                                                                 min,max,
 653                                                             acum_average,acum_standardeviation);
 654                 } // if size
 655         } // if NULL
 656
 657         // OUTPUT
 658         *rsize                          = size;
 659         *rCountRange            = countRange;
 660         *rmin                           = min;
 661         *rmax                           = max;
 662         *raverage                       = average;
 663         *rstandardeviation      = standardeviation;
 664 }
 665
 666 //------------------------------------------------------------------------
 667 void ContourExtractData::SetTypeOperation(int type)
 668 {
 669         _typeOperation=type;
 670 }
 671
 672 //------------------------------------------------------------------------
 673 void ContourExtractData::Fill_lstlstlstVecXY(int iContour, int sizeY)
 674 {
 675         int i,y;
 676         double x1,y1,z1,x2,y2,z2;
 677         manualBaseModel *manualcontourmodel= lstManConMod[iContour];
 678         int nps = manualcontourmodel->GetNumberOfPointsSpline(); // number of points in the spline
 679         manualcontourmodel->UpdateSpline();
 680         //------------------------------------------------------------------------------------------------------
 681
 682         for (y=0;y<sizeY;y++)
 683         {
 684                 manualcontourmodel->GetSpline_i_Point(0,&x1,&y1,&z1);
 685                 x1=x1+0.5; y1=y1+0.5;
 686                 for (i=1; i<nps; i++)
 687                 {
 688                         manualcontourmodel->GetSpline_i_Point(i,&x2,&y2,&z2);
 689                         x2=x2+0.5; y2=y2+0.5;
 690                         if ( ((y1<y2)&&(y>=y1)&&(y<=y2)) || ((y1>y2)&&(y>=y2)&&(y<=y1)) || ((int)y1==y) || ((int)y2==y)  )
 691                         {
 692                                 _lstlstlstVecX1[iContour][y].push_back(x1);
 693                                 _lstlstlstVecY1[iContour][y].push_back(y1);
 694                                 _lstlstlstVecX2[iContour][y].push_back(x2);
 695                                 _lstlstlstVecY2[iContour][y].push_back(y2);
 696                         }
 697                         x1=x2; y1=y2; z1=z2;
 698                 } // for i  Points in spline
 699         } // y
 700
 701 }
 702
 703 void ContourExtractData::InitLstContoursLinesYPoints()
 704 {
 705         // init InInside Optimisation
 706         int i;
 707
 708         _lstlstlstVecX1.clear();
 709         _lstlstlstVecY1.clear();
 710         _lstlstlstVecX2.clear();
 711         _lstlstlstVecY2.clear();
 712
 713         /* RaC 20-11-09
 714         int ext[6];
 715         this->imagedata->GetWholeExtent(ext);
 716         int sizeY = ext[3]-ext[2]+1;
 717         */
 718         std::vector<double> vecDouble;
 719         std::vector< std::vector<double> > vecVecDouble;
 720         for ( i=0 ; i<_sizeImageY ; i++ )
 721         {
 722                 vecVecDouble.push_back( vecDouble );
 723         }
 724
 725         //Fill structure with points
 726         int sizeContours = lstManConMod.size();
 727         for( i=0 ; i<sizeContours ; i++ )
 728         {
 729                 _lstlstlstVecX1.push_back( vecVecDouble );
 730                 _lstlstlstVecY1.push_back( vecVecDouble );
 731                 _lstlstlstVecX2.push_back( vecVecDouble );
 732                 _lstlstlstVecY2.push_back( vecVecDouble );
 733                 Fill_lstlstlstVecXY(i,_sizeImageY);
 734         }
 735
 736 }
 737
 738 void ContourExtractData::SetScalarRange(double min, double max)
 739 {
 740         scalarRange[0]=min;
 741         scalarRange[1]=max;
 742 }
 743
 744 void ContourExtractData::SetSizeImageY(int pSizeImageY)
 745 {
 746         _sizeImageY=pSizeImageY;
 747 }