lib/maracasVisuLib/src/kernel/include/marInterfaceCT.h

   1 /*=========================================================================
   2
   3   Program:   wxMaracas
   4   Module:    $RCSfile: marInterfaceCT.h,v $
   5   Language:  C++
   6   Date:      $Date: 2009/05/14 13:55:08 $
   7   Version:   $Revision: 1.1 $
   8
   9   Copyright: (c) 2002, 2003
  10   License:
  11
  12      This software is distributed WITHOUT ANY WARRANTY; without even
  13      the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14      PURPOSE.  See the above copyright notice for more information.
  15
  16 =========================================================================*/
  17 #ifndef __MAR__KERNEL__INTERFACECT__HXX__
  18 #define __MAR__KERNEL__INTERFACECT__HXX__
  19
  20 //#include "marDicom.h"
  21 #include "marDicomBase.h"
  22 #include "marKVolume.h"
  23 #include "marExperimentCT.h"
  24 #include "marAxisCT.h"
  25 #include "marDynData.h"
  26
  27
  28
  29
  30 class MAR_KERNEL_EXPORT marInterfaceCT
  31 {
  32   public:
  33
  34     marInterfaceCT( );
  35     ~marInterfaceCT( );
  36
  37     bool loadParameters( std::string pFile );
  38     bool saveParameters( std::string pFile );
  39
  40     bool loadParameters( ) {return loadParameters(m_paramFileName);}
  41     bool saveParameters( ) {return saveParameters(m_paramFileName);}
  42
  43     bool initExperiment( );
  44
  45     bool saveExperiment( std::string nFile );
  46 //    bool loadExperiment( wxString nFile );
  47     bool loadExperiment( std::string nFile );
  48
  49     void reset( );
  50
  51         void            SetParamFileName(std::string pFileName);
  52         std::string GetParamFileName();
  53         void            SetDicom(marFilesBase *dicom);
  54
  55         void appendAxis( marAxis* ax );
  56         marAxisCT* getAxis( int i = -1 ) ;
  57         void setAxis( int i );
  58
  59         int   getQuantStart( );
  60         int   getQuantFinish( );
  61
  62
  63         void prepareQuantification( );
  64
  65
  66         vtkImageData*           getSliceImage( int i );
  67         vtkProbeFilter* get3DSlice( int i );
  68         double                  getTotalLength();
  69         double                  getSubAxisLength();
  70         double                  getReferenceArea();
  71         double                  getReferenceAverDiam();
  72         double                  getAverageArea(int pIni, int pEnd);
  73         int                             getNumberOfSlices( );
  74
  75         marContour*             getContour( int point, int contour );
  76     vtkPoints*          get3Dcontour( int point, int contour );
  77     vtkPolyData*        get2Dcontour( int point, int contour );
  78     vtkPoints*          get2DDiameterMin( int point, int contour );
  79     vtkPoints*          get2DDiameterMax( int point, int contour );
  80
  81         marParameters*  getParameters();
  82         marDynData*             getDynData();
  83
  84         void getVOI( int* voi ) { _experiment->getVOI(voi); };
  85         void setVOI( int* voi ) { _experiment->setVOI(voi); };
  86         int getActualQuant( );
  87         int getHealthySlice( );
  88         int getHealthySliceStart( );
  89         int getHealthySliceEnd( );
  90         void setHealthySlice( int hsS, int hs, int hsE );
  91         void setActualQuant(int act);
  92
  93         void replaceContour2D(int i,int size,double *vx,double *vy);
  94         void replaceContour2D(int size,double *vx,double *vy, int type);
  95         void cleanContours(int type);
  96         void EraseContour(int i);
  97
  98         void ClearContours();
  99     void RegenerateAxis();
 100     void RegenerateSignal();
 101     void RecalculateAxis();
 102         void ClearContoursPartial(int start);
 103
 104         void getMinMax( double& min, double& max );
 105
 106         int getNumberOfContours(int point);
 107
 108         void updateLumenPercentage(int percentage);
 109         void updateCalcPercentage(int percentage);
 110         void updateDiscontinuityThreshold(int percentage);
 111
 112         marIsocontour* loadMarIsocontour(int size, double *vx, double *vy);
 113         double performXOR(int type, std::vector<marIsocontour*> manual);
 114         double performAND(int type, std::vector<marIsocontour*> manual);
 115         double performUnion(int type, std::vector<marIsocontour*> manual);
 116
 117         void histogram(int point) ;
 118
 119
 120
 121
 122         int     getContourType(int point, int index);
 123         void                            setCalibration(bool calib);
 124         bool                            getCalibration();
 125         void                            setStartIndex(int start);
 126
 127         int                                     getPointSize();
 128         marPoint*                       getPoint(int i);
 129         void                            markUpLumen(int point);
 130         void                            generateFile();
 131
 132         marExperimentCT* GetExperiment();
 133
 134     marFilesBase*               _dicom;
 135         marParameters*          _parameters;
 136
 137
 138 protected:
 139         std::string m_paramFileName;
 140
 141 private:
 142         marExperimentCT*        _experiment;
 143 };
 144
 145 #endif // __MAR__KERNEL__INTERFACECT__HXX__