lib/maracasVisuLib/src/kernel/include/marSimpleDicom.h

   1 /*# ---------------------------------------------------------------------
   2 #
   3 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
   4 #                        pour la Sant�)
   5 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
   6 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
   7 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
   8 #
   9 #  This software is governed by the CeCILL-B license under French law and
  10 #  abiding by the rules of distribution of free software. You can  use,
  11 #  modify and/ or redistribute the software under the terms of the CeCILL-B
  12 #  license as circulated by CEA, CNRS and INRIA at the following URL
  13 #  http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  14 #  or in the file LICENSE.txt.
  15 #
  16 #  As a counterpart to the access to the source code and  rights to copy,
  17 #  modify and redistribute granted by the license, users are provided only
  18 #  with a limited warranty  and the software's author,  the holder of the
  19 #  economic rights,  and the successive licensors  have only  limited
  20 #  liability.
  21 #
  22 #  The fact that you are presently reading this means that you have had
  23 #  knowledge of the CeCILL-B license and that you accept its terms.
  24 # ------------------------------------------------------------------------ */
  25
  26 /*=========================================================================
  27
  28  Program:   wxMaracas
  29  Module:    $RCSfile: marSimpleDicom.h,v $
  30  Language:  C++
  31  Date:      $Date: 2012/11/15 14:15:31 $
  32  Version:   $Revision: 1.2 $
  33
  34   Copyright: (c) 2002, 2003
  35   License:
  36
  37    This software is distributed WITHOUT ANY WARRANTY; without even
  38    the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  39    PURPOSE.  See the above copyright notice for more information.
  40
  41 =========================================================================*/
  42
  43 #ifndef __MAR__KERNEL__MARSIMPLEDICOM__HXX__
  44 #define __MAR__KERNEL__MARSIMPLEDICOM__HXX__
  45
  46 #include "marDicomBase.h"
  47
  48 #include "volume.hxx"
  49 #include <wx/string.h>
  50 #include <wx/gauge.h>
  51 // PS -> #include <gdcm.h>
  52 // PS -> #include <gdcmHeaderHelper.h>
  53 #include <vector>
  54 // PS -> #include <gdcmElValSet.h>
  55
  56 typedef std::vector<wxArrayString> SerieInfo;  //DICOM info for each serie
  57                                                                                            /**
  58 * Shouldn't we break the dependencies to wx ???
  59 *
  60 * We use vector instead of list for efficiency: for access time
  61 * futhermore the number of patient is not changing a lot, so we
  62 * might add the number of patient to params.dat, to allocate the right
  63 * number of vector
  64 *
  65 */
  66
  67 // EED Borrame
  68 //class MAR_KERNEL_EXPORT marGdcmDicom : public marObject
  69
  70 class marSimpleDicom : public marFilesBase
  71 {
  72 public:
  73
  74     enum DicomTags
  75     {
  76                 ID_File_Name = 0                   ,
  77                         ID_SOP_Class_UID                   ,//!0008 0016 UI ID SOP Class UID
  78                         ID_SOP_Instance_UID                ,//!0008 0018 UI ID SOP Instance UID
  79                         ID_Study_Date                      ,//!0008 0020 DA ID Study Date
  80                         ID_Series_Date                     ,//!0008 0021 DA ID Series Date
  81                         ID_Acquisition_Date                ,//!0008 0022 DA ID Acquisition Date
  82                         ID_Image_Date                      ,//!0008 0023 DA ID Image Date
  83                         ID_Study_Time                      ,//!0008 0030 TM ID Study Time
  84                         ID_Series_Time                     ,//!0008 0031 TM ID Series Time
  85                         ID_Acquisition_Time                ,//!0008 0032 TM ID Acquisition Time
  86                         ID_Image_Time                      ,//!0008 0033 TM ID Image Time
  87                         ID_Modality                        ,//!0008 0060 CS ID Modality
  88                         ID_Manufacturer                    ,//!0008 0070 LO ID Manufacturer
  89                         ID_Institution_Name                ,//!0008 0080 LO ID Institution Name
  90                         ID_Study_Description               ,//!0008 1030 LO ID Study Description
  91                         ID_Series_Description              ,//!0008 103e LO ID Series Description
  92                         ID_Admitting_Diagnoses_Description ,//!0008 1080 LO ID Admitting Diagnoses Description
  93                         ID_Patient_Name                    ,//!0010 0010 PN PAT Patient Name
  94                         ID_Patient_ID                      ,//!0010 0020 LO PAT Patient ID
  95                         ID_Body_Part_Examined              ,//!0018 0015 CS ACQ Body Part Examined
  96                         ID_Scanning_Sequence               ,//!0018 0020 CS ACQ Scanning Sequence
  97                         ID_Sequence_Variant                ,//!0018 0021 CS ACQ Sequence Variant
  98                         ID_Scan_Options                    ,//!0018 0022 CS ACQ Scan Options
  99                         ID_MR_Acquisition_Type             ,//!0018 0023 CS ACQ MR Acquisition Type
 100                         ID_Sequence_Name                   ,//!0018 0024 SH ACQ Sequence Name
 101                         ID_Slice_Thickness                 ,//!0018 0050 DS ACQ Slice Thickness
 102                         ID_Repetition_Time                 ,//!0018 0080 DS ACQ Repetition Time
 103                         ID_Echo_Time                       ,//!0018 0081 DS ACQ Echo Time
 104                         ID_Inversion_Time                  ,//!0018 0082 DS ACQ Inversion Time
 105                         ID_Number_of_Averages              ,//!0018 0083 DS ACQ Number of Averages
 106                         ID_Imaging_Frequency               ,//!0018 0084 DS ACQ Imaging Frequency
 107                         ID_Imaged_Nucleus                  ,//!0018 0085 SH ACQ Imaged Nucleus
 108                         ID_Echo_Number                     ,//!0018 0086 IS ACQ Echo Number
 109                         ID_Magnetic_Field_Strength         ,//!0018 0087 DS ACQ Magnetic Field Strength
 110                         ID_Spacing_Between_Slices          ,//!0018 0088 DS ACQ Spacing Between Slices
 111                         ID_Echo_Train_Length               ,//!0018 0091 IS ACQ Echo Train Length
 112                         ID_Percent_Sampling                ,//!0018 0093 DS ACQ Percent Sampling
 113                         ID_Percent_Phase_Field_of_View     ,//!0018 0094 DS ACQ Percent Phase Field of View
 114                         ID_Receiving_Coil                  ,//!0018 1250 SH ACQ Receiving Coil
 115                         ID_Patient_Position                ,//!0018 5100 CS ACQ Patient Position
 116                         ID_Study_Instance_UID              ,//!0020 000d UI REL Study Instance UID
 117                         ID_Series_Instance_UID             ,//!0020 000e UI REL Series Instance UID
 118                         ID_Study_ID                        ,//!0020 0010 SH REL Study ID
 119                         ID_Series_Number                   ,//!0020 0011 IS REL Series Number
 120                         ID_Acquisition_Number              ,//!0020 0012 IS REL Acquisition Number
 121                         ID_Image_Number                    ,//!0020 0013 IS REL Image Number
 122                         ID_Patient_Orientation             ,//!0020 0020 CS REL Patient Orientation
 123                         ID_Image_Position                  ,//!0020 0030 RET REL Image Position
 124                         ID_Image_Position_Patient          ,//!0020 0032 DS REL Image Position Patient
 125                         ID_Image_Orientation               ,//!0020 0035 RET REL Image Orientation
 126                         ID_Image_Orientation_Patient       ,//!0020 0037 DS REL Image Orientation (Patient)
 127                         ID_Location                        ,//!0020 0050 RET REL Location
 128                         ID_Frame_of_Reference_UID          ,//!0020 0052 UI REL Frame of Reference UID
 129                         ID_Slice_Location                  ,//!0020 1041 DS REL Slice Location
 130                         ID_Image_Comments                  ,//!0020 4000 LT REL Image Comments
 131                         ID_Pixel_Spacing                   ,//!0028 0030 DS IMG Pixel Spacing
 132                         ID_Window_Center                   ,//!0028 1050 DS IMG Window Center
 133                         ID_Window_Width                    ,//!0028 1051 DS IMG Window Width
 134                         ID_dicom_tags_count
 135     };
 136
 137 public:
 138         void SetVolumeData( int dimX,
 139                                                 int dimY,
 140                                                 int dimZ,
 141                                 float spacingX,
 142                                                 float spacingY,
 143                                                 float spacingZ,
 144                                                 float rescaleSlope,
 145                                                 float rescaleIntercept,
 146                                                 unsigned short * pixels);
 147
 148     marSimpleDicom( marParameters* p = NULL );
 149
 150     virtual ~marSimpleDicom( );
 151
 152     /**
 153         Function which return an *ordered* array string
 154         The string is ordered so that filename are in the right order
 155     */
 156 // PS ->     wxArrayString getStudyInfo( ) { return( m_DicomInfo[m_ActualStudy][0] ); }
 157 // PS ->     int getNumberOfStudies( ) { return m_DicomInfo.size(); }
 158 // PS ->     wxArrayString getSerieInfo( ) { return( m_DicomInfo[m_ActualStudy][m_ActualSerie] ); }
 159 // PS ->     int getNumberOfSeries( ) { return m_DicomInfo[m_ActualStudy].size(); }
 160
 161
 162 // PS ->     int getNumberOfFiles( )
 163 // PS ->     {
 164 // PS ->                return m_DicomInfo[m_ActualStudy][m_ActualSerie].GetCount();
 165 // PS ->     }
 166
 167         void SetInvestSliceOrder(bool investSliceOrder);
 168
 169     void loadActualSerie(wxGauge* gauge );
 170
 171 // PS ->     wxArrayString getImageNumbers( )
 172 // PS ->     {
 173 // PS ->                wxArrayString imageNumbers;
 174 // PS ->                std::list<gdcmHeaderHelper*> flist = helper->GetGdcmFileList();
 175 // PS ->                for(std::list<gdcmHeaderHelper*>::iterator it = flist.begin();
 176 // PS ->                it != flist.end(); it++ )
 177 // PS ->                {
 178 // PS ->                        imageNumbers.Add( wxString::Format("%d", (*it)->GetImageNumber()) );
 179 // PS ->                }
 180 // PS ->                return( imageNumbers );
 181 // PS ->     }
 182
 183         // PS ->     void loadVolume( bool force = false, wxGauge* gauge = NULL);
 184     void loadVolumeDXMM( bool force = false, wxGauge* gauge = NULL);
 185
 186 // PS ->
 187 // PS ->     bool setActualStudy( unsigned int studynumber )
 188 // PS ->     {
 189 // PS ->                m_ActualStudy = studynumber;
 190 // PS ->                return true;
 191 // PS ->     }
 192 // PS ->     bool setActualSerie( unsigned int serienumber )
 193 // PS ->     {
 194 // PS ->                m_ActualSerie = serienumber;
 195 // PS ->                return true;
 196 // PS ->     }
 197 // PS ->
 198     /**
 199         * General methods
 200         */
 201     void reset( );
 202     void copyFrom( const marObject& from );
 203
 204     /**
 205         * Persistence methods
 206         */
 207     bool save( std::ofstream& os );
 208     bool load( std::ifstream& is );
 209
 210 // PS ->     void FillDicomInfo();
 211
 212 // PS ->     wxString GetPatientName()
 213 // PS ->        {
 214 // PS ->                return wxString( helper->GetGdcmHeader()->GetPubElValByNumber(0x0010,0x0010).c_str()).Trim();//0010 0010 PN PAT Patient Name
 215 // PS ->        }
 216
 217   private:
 218
 219 // PS ->          wxArrayString gdcmGetExamInfo( wxString directoryname );
 220
 221           std::vector< SerieInfo > m_DicomInfo;
 222           unsigned int m_ActualStudy;
 223           unsigned int m_ActualSerie;
 224
 225 // PS ->          gdcmSerieHeaderHelper *helper;
 226           unsigned short * m_pSlicesPixels;
 227           int   m_nX, m_nY, m_nSlices;
 228           float m_PixelSpacingColumn,m_PixelSpacingRow,m_PixelSpacingSlice;
 229           float m_RescaleSlope, m_RescaleIntercept;
 230           bool  _investSliceOrder;
 231 };
 232
 233 #endif // __MAR__KERNEL__MARSIMPLEDICOM__HXX__