2 # ---------------------------------------------------------------------
4 # Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
6 # Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
7 # Previous Authors : Laurent Guigues, Jean-Pierre Roux
8 # CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
10 # This software is governed by the CeCILL-B license under French law and
11 # abiding by the rules of distribution of free software. You can use,
12 # modify and/ or redistribute the software under the terms of the CeCILL-B
13 # license as circulated by CEA, CNRS and INRIA at the following URL
14 # http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
15 # or in the file LICENSE.txt.
17 # As a counterpart to the access to the source code and rights to copy,
18 # modify and redistribute granted by the license, users are provided only
19 # with a limited warranty and the software's author, the holder of the
20 # economic rights, and the successive licensors have only limited
23 # The fact that you are presently reading this means that you have had
24 # knowledge of the CeCILL-B license and that you accept its terms.
25 # ------------------------------------------------------------------------ */
29 #ifndef __bbgdcmvtkGetXCoherentInfoGdcmReader_h_INCLUDED__
30 #define __bbgdcmvtkGetXCoherentInfoGdcmReader_h_INCLUDED__
32 #include "bbgdcmvtk_EXPORT.h"
33 #include "bbtkAtomicBlackBox.h"
37 #include "vtkGdcmReader.h"
40 #if defined(USE_GDCM2)
41 #include "vtkGDCMImageReader.h"
45 #include "gdcmSerieHelper.h"
47 #include "vtkImageData.h"
50 typedef std::map<std::string, std::string> MapInfoDicom;
51 typedef std::vector< MapInfoDicom > VectorMapInfoDicom;
53 class bbgdcmvtk_EXPORT GetXCoherentInfoGdcmReader
55 public bbtk::AtomicBlackBox
58 BBTK_BLACK_BOX_INTERFACE(GetXCoherentInfoGdcmReader,bbtk::AtomicBlackBox);
60 BBTK_DECLARE_INPUT(In , std::vector<std::string>);
61 BBTK_DECLARE_INPUT(IPPSort , bool);
62 BBTK_DECLARE_INPUT(DicomTags , std::vector<std::string>);
63 BBTK_DECLARE_INPUT(ReadRaw , bool);
64 BBTK_DECLARE_INPUT(RespectSerieUID, bool);
66 BBTK_DECLARE_OUTPUT(Out , vtkImageData *);
67 BBTK_DECLARE_OUTPUT(OutFileNames , std::vector<std::string>);
68 BBTK_DECLARE_OUTPUT(IPP , std::vector<double>);
69 BBTK_DECLARE_OUTPUT(IOP , std::vector<double>);
70 BBTK_DECLARE_OUTPUT(PixelSpacing , std::vector<double>);
71 BBTK_DECLARE_OUTPUT(DicomInfo , VectorMapInfoDicom);
73 BBTK_PROCESS(Process);
78 vtkImageData* CreateDefaultImage();
84 GDCM_NAME_SPACE::File *f;
85 GDCM_NAME_SPACE::SerieHelper *sh;
86 vtkGdcmReader *reader;
89 vtkGDCMImageReader *reader;
93 //=================================================================
94 // UserBlackBox description
95 BBTK_BEGIN_DESCRIBE_BLACK_BOX(GetXCoherentInfoGdcmReader,bbtk::AtomicBlackBox);
96 BBTK_NAME("GetXCoherentInfoGdcmReader");
97 BBTK_AUTHOR("jpr, eduardo");
98 BBTK_DESCRIPTION("Get Dicom info from a File Set (a list of Dicom image file names) and read (as a vtkImageData)");
101 BBTK_INPUT(GetXCoherentInfoGdcmReader,In ,"List of Dicom image file names", std::vector<std::string>,"");
102 BBTK_INPUT(GetXCoherentInfoGdcmReader,IPPSort ,"Sort on Image Position Patient", bool,"");
103 BBTK_INPUT(GetXCoherentInfoGdcmReader,DicomTags ,"Dicom Tags (vector of Dicom tags ex: D0028_0030 D0020_0037)", std::vector<std::string>,"");
104 BBTK_INPUT(GetXCoherentInfoGdcmReader,ReadRaw ,"(default true) false: not read raw just dicom tags", bool,"");
105 BBTK_INPUT(GetXCoherentInfoGdcmReader,RespectSerieUID ,"(default true) Respect Serie UID to be read", bool,"");
107 BBTK_OUTPUT(GetXCoherentInfoGdcmReader,Out ,"Output image" , vtkImageData *,"");
108 BBTK_OUTPUT(GetXCoherentInfoGdcmReader,OutFileNames ,"List of the files in the good order" , std::vector<std::string>,"");
109 BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IPP ,"Image Position (Patient)" , std::vector<double>,"");
110 BBTK_OUTPUT(GetXCoherentInfoGdcmReader,IOP ,"Image Orientation (Patient)" , std::vector<double>,"");
111 BBTK_OUTPUT(GetXCoherentInfoGdcmReader,PixelSpacing ,"Pixel Spacing" , std::vector<double>,"");
112 BBTK_OUTPUT(GetXCoherentInfoGdcmReader,DicomInfo ,"vector of maps of Dicom tags" , VectorMapInfoDicom,"");
113 BBTK_END_DESCRIBE_BLACK_BOX(GetXCoherentInfoGdcmReader);
114 } // EO namespace bbgdcmvtk
116 #endif // __bbgdcmvtkGetXCoherentInfoGdcmReader_h_INCLUDED__