1 /*=========================================================================
3 Module: $RCSfile: bbitkImageSeriesReader.cxx,v $
5 Date: $Date: 2008/10/17 08:18:21 $
6 Version: $Revision: 1.6 $
7 =========================================================================*/
9 /* ---------------------------------------------------------------------
11 * Copyright (c) CREATIS-LRMN (Centre de Recherche en Imagerie Medicale)
12 * Authors : Eduardo Davila, Laurent Guigues, Jean-Pierre Roux
14 * This software is governed by the CeCILL-B license under French law and
15 * abiding by the rules of distribution of free software. You can use,
16 * modify and/ or redistribute the software under the terms of the CeCILL-B
17 * license as circulated by CEA, CNRS and INRIA at the following URL
18 * http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
19 * or in the file LICENSE.txt.
21 * As a counterpart to the access to the source code and rights to copy,
22 * modify and redistribute granted by the license, users are provided only
23 * with a limited warranty and the software's author, the holder of the
24 * economic rights, and the successive licensors have only limited
27 * The fact that you are presently reading this means that you have had
28 * knowledge of the CeCILL-B license and that you accept its terms.
29 * ------------------------------------------------------------------------ */
37 #include "bbitkImageSeriesReader.h"
38 #include "bbitkPackage.h"
39 #include "itkImageSeriesReader.h"
43 BBTK_BLACK_BOX_IMPLEMENTATION(ImageSeriesReader,bbtk::AtomicBlackBox);
45 BBTK_ADD_BLACK_BOX_TO_PACKAGE(itk,ImageSeriesReader);
47 void ImageSeriesReader::Read()
49 const std::vector<std::string>& filenames = bbGetInputFileNames();
50 if (!filenames.size())
52 typedef Image_uint8_t_2_ptr itype;
53 Image_uint8_t_2::Pointer p = Image_uint8_t_2::New();
54 Image_uint8_t_2::IndexType i;
56 Image_uint8_t_2::SizeType s;
58 Image_uint8_t_2::RegionType r(i,s);
62 bbSetOutputOut(p.GetPointer());
64 //bbtkError("Void vector passed to "<<bbGetFullName());
67 std::string filename = filenames[0];
69 itk::ImageIOBase::Pointer genericReader =
70 itk::ImageIOFactory::CreateImageIO(filename.c_str(),
71 itk::ImageIOFactory::ReadMode);
74 bbtkError(bbGetFullName()<<" : File format unknown (while reading \"" << filename << "\")");
76 genericReader->SetFileName(filename.c_str());
77 genericReader->ReadImageInformation();
79 bbtk::TypeInfo typ = GetITKImagePtrTypeInfoFromPixelTypeInfoAndDimension(genericReader->GetComponentTypeInfo(), genericReader->GetNumberOfDimensions());
81 BBTK_TEMPLATE_ITK_IMAGE_SWITCH(typ,Read);
89 void ImageSeriesReader::Read()
91 bbtkDebugMessageInc("Core",9,"bbitk::ImageSeriesReader<"
93 <<">::Read()"<<std::endl);
95 typedef T itkImageType;
96 typedef itk::ImageSeriesReader< itkImageType > itkReaderType;
98 typename itkReaderType::Pointer reader = itkReaderType::New();
99 const std::vector<std::string>& filenames = bbGetInputFileNames();
100 reader->SetFileNames(filenames);
101 try { reader->Update(); }
102 catch( std::exception& e )
104 bbtkError("could not read image series : "<<e.what());
107 reader->GetOutput()->Register();
108 // if (bbGetOutputOut())
109 bbSetOutputOut ( reader->GetOutput() );
111 bbtkDebugDecTab("Core",9);