plugins/cpPluginsImageFilters/IsoImageSlicer.cxx

   1 #include <cpPluginsImageFilters/IsoImageSlicer.h>
   2 #include <cpPlugins/Image.h>
   3 #include <cpPlugins_ITKInstances/ImageFilters.h>
   4
   5 #include <cpExtensions/Algorithms/IsoImageSlicer.h>
   6 #include <cpExtensions/Algorithms/IsoImageSlicer.hxx>
   7 #include <itkAffineTransform.hxx>
   8 #include <itkMatrixOffsetTransformBase.hxx>
   9 #include <itkVariableLengthVector.hxx>
  10 #include <itkDiffusionTensor3D.hxx>
  11 #include <itkOptimizerParameters.hxx>
  12 #include <itkExtractImageFilter.hxx>
  13 #include <itkResampleImageFilter.hxx>
  14 #include <itkSymmetricSecondRankTensor.hxx>
  15 #include <itkLinearInterpolateImageFunction.hxx>
  16
  17 /*
  18   #include <itkIsoImageSlicer.h>
  19   #include <itkIsoImageSlicer.hxx>
  20   #include <itkUnaryFunctorImageFilter.hxx>
  21 */
  22
  23 // -------------------------------------------------------------------------
  24 cpPluginsImageFilters::IsoImageSlicer::
  25 IsoImageSlicer( )
  26   : Superclass( )
  27 {
  28   this->_AddInput( "Input" );
  29   this->_AddOutput< cpPlugins::Image >( "Output" );
  30
  31   std::vector< std::string > choices;
  32   choices.push_back( "float" );
  33   choices.push_back( "double" );
  34   this->m_Parameters.ConfigureAsChoices( "ScalarType", choices );
  35   this->m_Parameters.SetSelectedChoice( "ScalarType", "float" );
  36   /* TODO
  37      this->m_Parameters.ConfigureAsReal( "LowerThresholdValue" );
  38      this->m_Parameters.ConfigureAsReal( "UpperThresholdValue" );
  39      this->m_Parameters.ConfigureAsUint( "InsideValue" );
  40      this->m_Parameters.ConfigureAsUint( "OutsideValue" );
  41
  42      this->m_Parameters.SetReal( "LowerThresholdValue", 0 );
  43      this->m_Parameters.SetReal( "UpperThresholdValue", 10000 );
  44      this->m_Parameters.SetReal( "InsideValue", 1 );
  45      this->m_Parameters.SetReal( "OutsideValue", 0 );
  46   */
  47 }
  48
  49 // -------------------------------------------------------------------------
  50 cpPluginsImageFilters::IsoImageSlicer::
  51 ~IsoImageSlicer( )
  52 {
  53 }
  54
  55 // -------------------------------------------------------------------------
  56 std::string cpPluginsImageFilters::IsoImageSlicer::
  57 _GenerateData( )
  58 {
  59   auto image = this->GetInputData( "Input" )->GetITK< itk::DataObject >( );
  60   std::string cpPlugin_Image_Demangle_Pixel_AllScalars( r, _GD0, image, 3 );
  61   return( r );
  62 }
  63
  64 // -------------------------------------------------------------------------
  65 template< class _TImage >
  66 std::string cpPluginsImageFilters::IsoImageSlicer::
  67 _GD0( _TImage* image )
  68 {
  69   if( image != NULL )
  70   {
  71     auto choice = this->m_Parameters.GetSelectedChoice( "OutputResolution" );
  72     if( choice == "float" )
  73       return( this->_GD1< _TImage, float >( image ) );
  74     else if( choice == "double" )
  75       return( this->_GD1< _TImage, double >( image ) );
  76     else return( "IsoImageSlicer: no valid scalar type." );
  77   }
  78   else
  79     return(
  80       "ImageFilters::IsoImageSlicer: No valid input image."
  81       );
  82 }
  83
  84 // -------------------------------------------------------------------------
  85 template< class _TImage, class _TScalar >
  86 std::string cpPluginsImageFilters::IsoImageSlicer::
  87 _GD1( _TImage* image )
  88 {
  89   typedef
  90     cpExtensions::Algorithms::IsoImageSlicer< _TImage, _TScalar >
  91     _TFilter;
  92   typedef typename _TFilter::TVector _TVector;
  93   typedef typename _TFilter::TMatrix _TMatrix;
  94
  95   // Configure filter
  96   _TFilter* filter = this->_CreateITK< _TFilter >( );
  97   filter->SetInput( image );
  98   filter->SetInterpolator( NULL );
  99   filter->SetTranslation( _TVector( ) );
 100   filter->SetRotation( _TMatrix( ) );
 101   filter->SetSize( 1 );
 102   /* TODO
 103      filter->SetLowerThreshold( lower_val );
 104      filter->SetUpperThreshold( upper_val );
 105      filter->SetInsideValue( in_val );
 106      filter->SetOutsideValue( out_val );
 107      filter->Update( );
 108   */
 109
 110   // Connect output
 111   this->GetOutputData( "Output" )->SetITK( filter->GetOutput( ) );
 112   return( "" );
 113 }
 114
 115 #include <cpExtensions/Algorithms/BezierCurveFunction.h>
 116 #include <cpExtensions/Algorithms/BezierCurveFunction.hxx>
 117
 118 template class cpPluginsImageFilters_EXPORT cpExtensions::Algorithms::BezierCurveFunction< itk::Vector< float, 3 > >;
 119 template class cpPluginsImageFilters_EXPORT cpExtensions::Algorithms::BezierCurveFunction< itk::Vector< double, 3 > >;
 120
 121 // eof - $RCSfile$