1 #include "ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.h"
2 #include "MinimumSpanningTree.h"
4 #include <cpPlugins/Image.h>
5 #include <fpa/Image/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.h>
6 #include <fpa/Base/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.hxx>
7 #include <fpa/Image/ExtractEndPointsAndBifurcationsFromMinimumSpanningTree.hxx>
9 // -------------------------------------------------------------------------
10 fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree::
11 ExtractEndPointsAndBifurcationsFromMinimumSpanningTree( )
14 this->_AddInput( "CostsImage" );
15 this->_AddInput( "DistanceMap" );
16 this->_AddInput( "MST" );
17 this->_AddOutput< cpPlugins::DataObject >( "EndPoints" );
18 this->_AddOutput< cpPlugins::DataObject >( "Bifurcations" );
19 this->_AddOutput< cpPlugins::DataObject >( "Collisions" );
21 this->m_Parameters.ConfigureAsBool( "SquaredDistanceMap" );
22 this->m_Parameters.SetBool( "SquaredDistanceMap", false );
25 // -------------------------------------------------------------------------
26 fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree::
27 ~ExtractEndPointsAndBifurcationsFromMinimumSpanningTree( )
31 // -------------------------------------------------------------------------
32 std::string fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree::
35 auto image = this->GetInputData( "CostsImage" )->GetITK< itk::DataObject >( );
36 std::string r = cpPlugin_Image_Demangle_Pixel_Dim( _GD0, image, float, 2 );
37 if( r != "" ) r = cpPlugin_Image_Demangle_Pixel_Dim( _GD0, image, double, 2 );
38 if( r != "" ) r = cpPlugin_Image_Demangle_Pixel_Dim( _GD0, image, float, 3 );
39 if( r != "" ) r = cpPlugin_Image_Demangle_Pixel_Dim( _GD0, image, double, 3 );
43 // -------------------------------------------------------------------------
44 template< class _TImage >
45 std::string fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree::
46 _GD0( _TImage* image )
48 typedef fpa::Image::MinimumSpanningTree< _TImage::ImageDimension > _TMST;
49 typedef fpa::Image::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree< _TImage, _TMST > _TFilter;
51 // Check input objects' integrity
54 "fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree: No valid input costs image."
56 auto dmap = this->GetInputData( "DistanceMap" )->GetITK< _TImage >( );
59 "fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree: Distance map does not have the same type as the costs image."
61 auto mst = this->GetInputData( "MST" )->GetITK< _TMST >( );
64 "fpaPlugins::ExtractEndPointsAndBifurcationsFromMinimumSpanningTree: No valid input tree."
67 // Create filter and connect inputs
68 _TFilter* filter = this->_CreateITK< _TFilter >( );
69 filter->SetCostsImage( image );
70 filter->SetDistanceMap( dmap );
71 filter->SetMinimumSpanningTree( mst );
72 filter->SetSquaredDistanceMap(
73 this->m_Parameters.GetBool( "SquaredDistanceMap" )
77 this->GetOutputData( "EndPoints" )->SetITK( filter->GetEndPoints( ) );
78 this->GetOutputData( "Bifurcations" )->SetITK( filter->GetBifurcations( ) );
79 this->GetOutputData( "Collisions" )->SetITK( filter->GetCollisions( ) );