1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
18 #ifndef clitkCalculateTREGenericFilter_h
19 #define clitkCalculateTREGenericFilter_h
21 /* =================================================
22 * @file clitkCalculateTREGenericFilter.h
28 ===================================================*/
33 #include "clitkCommon.h"
34 #include "clitkCalculateTRE_ggo.h"
35 #include "clitkGenericVectorInterpolator.h"
36 #include "clitkPointListWriter.h"
37 #include "clitkPointListReader.h"
38 #include "clitkDeformationListStatisticsFilter.h"
39 #include "clitkList.h"
42 #include "itkLightObject.h"
43 #include "itkExtractImageFilter.h"
52 class ITK_EXPORT CalculateTREGenericFilter : public itk::LightObject
55 //----------------------------------------
57 //----------------------------------------
58 typedef CalculateTREGenericFilter Self;
59 typedef itk::LightObject Superclass;
60 typedef itk::SmartPointer<Self> Pointer;
61 typedef itk::SmartPointer<const Self> ConstPointer;
63 // Method for creation through the object factory
66 // Run-time type information (and related methods)
67 itkTypeMacro( CalculateTREGenericFilter, LightObject );
70 //----------------------------------------
72 //----------------------------------------
75 //----------------------------------------
77 //----------------------------------------
78 void SetArgsInfo(const args_info_clitkCalculateTRE& a)
81 m_Verbose=m_ArgsInfo.verbose_flag;
82 m_InputFileName=m_ArgsInfo.vf_arg[0];
86 //----------------------------------------
88 //----------------------------------------
93 //----------------------------------------
94 // Constructor & Destructor
95 //----------------------------------------
96 CalculateTREGenericFilter();
97 ~CalculateTREGenericFilter() {};
100 //----------------------------------------
102 //----------------------------------------
103 template <unsigned int Dimension,unsigned int Components> void ReadVectorFields(void);
104 template <unsigned int Dimension,unsigned int Components> void ProcessVectorFields(std::vector< typename itk::Image<itk::Vector<float, Components>, Dimension>::Pointer > dvfs, char** filenames);
105 template <unsigned int Dimension> void UpdateWithDim( std::vector<typename itk::Image<itk::Vector<float, Dimension>, Dimension>::Pointer > dvfs, std::vector<std::string> filenames);
108 //----------------------------------------
110 //----------------------------------------
111 args_info_clitkCalculateTRE m_ArgsInfo;
113 std::string m_InputFileName;
118 } // end namespace clitk
120 #ifndef ITK_MANUAL_INSTANTIATION
121 #include "clitkCalculateTREGenericFilter.txx"
124 #endif // #define clitkCalculateTREGenericFilter_h