1 ###############################################################################
3 # FILE: midp_template.conf
4 # AUTHOR: RĂ´mulo Pinho 05/08/2011
6 # Template configuration file for create_midP-2.0.sh. Values between <> must be
7 # changed according to the methods.
9 ###############################################################################
17 # script step to be executed (mask, registration, midp, all)
18 # midp depends on registration, which depends on mask
21 # indicate if midp images are computed with the in and out
25 # indicate which masks are used in the registration (mm, lungs, patient). if
26 # "patient", only the patient mask is used, and midp_combined_vf is
32 # interpolation algorithm for resampling (see clitkResampleImage)
33 mask_interpolation_algorithm="<MASK_INTERPOLATION_ALGORITHM>"
34 # interpolation spacing (in mm)
35 mask_interpolation_spacing=<MASK_INTERPOLATION_SPACING>
37 # registration method (blut, elastix)
40 # registration parameters (depend on registration method - see descriptions)
43 # b-spline spacing (blut, elastix)
44 bspline_spacing=<BSPLINE_SPACING>
46 # multi-resolution levels
49 # number of histogram bins (blut, elastix)
50 nb_hist_bins=<NB_HIST_BINS>
52 # number of points (samples) to calculate metric
53 # (blut: percentage of image size; elastix: absolute number)
54 nb_samples=<NBSAMPLES>
56 # algorithm used to sample points for the metric
58 sampling_algo="<SAMPLING_ALGO>"
60 # number of iterations (blut, elastix)
63 # tolerance (stop condition for the metric) (blut)
66 # metric used in the registration
67 # (blut: see clitkBLUTDIR; elastix: see docs)
71 # (blut: see clitkBLUTDIR; elastix: see docs)
72 interpolator="<INTERPOLATOR>"
75 # (blut: see clitkBLUTDIR; elastix: see docs)
76 optimizer="<OPTIMIZER>"