1 #=========================================================
3 INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
5 #=========================================================
7 # Add Libraries used in vv and clitk to avoid recompilation
8 FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
9 WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
10 SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
12 ADD_LIBRARY(clitkSegmentationGgoLib
13 clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
14 clitkAnatomicalFeatureDatabase.cxx
17 #=========================================================
19 IF(CLITK_BUILD_SEGMENTATION)
20 WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
21 ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
22 TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
23 SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
25 WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
26 ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C})
27 TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ${ITK_LIBRARIES})
28 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillMask)
30 ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
31 TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
32 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractPatient)
34 ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C})
35 TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
36 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLung)
38 # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo)
39 # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C})
40 # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
41 # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractAirwaysTreeInfo)
43 WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
44 ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
45 TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
46 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractBones)
48 WRAP_GGO(clitkBool_GGO_C clitkBool.ggo)
49 ADD_EXECUTABLE(clitkBool clitkBool.cxx ${clitkBool_GGO_C})
50 TARGET_LINK_LIBRARIES(clitkBool clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
51 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkBool)
53 WRAP_GGO(clitkRelativePosition_GGO_C ../tools/clitkRelativePosition.ggo)
55 WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
56 ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C} ${clitkRelativePosition_GGO_C})
57 TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES})
58 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinum)
60 WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
61 ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C} ${clitkRelativePosition_GGO_C})
62 TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
63 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractLymphStations)
65 WRAP_GGO(clitkExtractMediastinalVessels_GGO_C clitkExtractMediastinalVessels.ggo)
66 ADD_EXECUTABLE(clitkExtractMediastinalVessels clitkExtractMediastinalVessels.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractMediastinalVessels_GGO_C})
67 TARGET_LINK_LIBRARIES(clitkExtractMediastinalVessels clitkSegmentationGgoLib clitkCommon vtkHybrid)
68 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkExtractMediastinalVessels)
70 WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
71 ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
72 TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
73 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoMath)
75 WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
76 ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
77 TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
78 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMorphoReconstruction)
80 WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
81 ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
82 TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ${ITK_LIBRARIES})
83 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkCalculateDistanceMap)
85 WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
86 ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
87 TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ${ITK_LIBRARIES})
88 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkLevelSetSegmentation)
90 WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
91 ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
92 TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} )
93 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkAnd)
95 WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
96 ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
97 TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES})
98 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkRegionGrowing)
100 WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
101 ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
102 TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
103 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkDecomposeAndReconstruct)
105 WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
106 ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
107 TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
108 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkMotionMask)
110 WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
111 ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
112 TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ${ITK_LIBRARIES})
113 SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkFillImageRegion)
115 # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
116 # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
117 # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
118 # SET(SEGMENTATION_INSTALL ${SEGMENTATION_INSTALL} clitkTestFilter)
120 SET_TARGET_PROPERTIES(${SEGMENTATION_INSTALL} PROPERTIES INSTALL_RPATH "${VTK_DIR}:${ITK_DIR}" )
121 INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
123 ENDIF(CLITK_BUILD_SEGMENTATION)
125 # ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
126 # TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
127 # ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
128 # TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)