1 #=========================================================
3 INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
5 #=========================================================
7 # Add Libraries used in vv and clitk to avoid recompilation
8 FOREACH(clitkTool clitkExtractLung clitkExtractPatient)
9 WRAP_GGO(${clitkTool}_GGO_C ${clitkTool}.ggo)
10 SET(GGO_C_FILES ${GGO_C_FILES} ${${clitkTool}_GGO_C})
12 ADD_LIBRARY(clitkSegmentationGgoLib
13 clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx
14 clitkAnatomicalFeatureDatabase.cxx
17 #=========================================================
19 IF(CLITK_BUILD_SEGMENTATION)
20 WRAP_GGO(clitkConnectedComponentLabeling_GGO_C clitkConnectedComponentLabeling.ggo)
21 ADD_EXECUTABLE(clitkConnectedComponentLabeling clitkConnectedComponentLabeling.cxx ${clitkConnectedComponentLabeling_GGO_C})
22 TARGET_LINK_LIBRARIES(clitkConnectedComponentLabeling clitkCommon ${ITK_LIBRARIES})
23 SET(SEGMENTATION_INSTALL clitkConnectedComponentLabeling)
25 WRAP_GGO(clitkFillMask_GGO_C clitkFillMask.ggo)
26 ADD_EXECUTABLE(clitkFillMask clitkFillMask.cxx ${clitkFillMask_GGO_C})
27 TARGET_LINK_LIBRARIES(clitkFillMask clitkCommon ${ITK_LIBRARIES})
28 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkFillMask)
30 ADD_EXECUTABLE(clitkExtractPatient clitkExtractPatient.cxx ${clitkExtractPatient_GGO_C})
31 TARGET_LINK_LIBRARIES(clitkExtractPatient clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
32 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractPatient)
34 ADD_EXECUTABLE(clitkExtractLung clitkExtractLung.cxx ${clitkExtractLung_GGO_C})
35 TARGET_LINK_LIBRARIES(clitkExtractLung clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
36 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractLung)
38 # WRAP_GGO(clitkExtractAirwaysTreeInfo_GGO_C clitkExtractAirwaysTreeInfo.ggo)
39 # ADD_EXECUTABLE(clitkExtractAirwaysTreeInfo clitkExtractAirwaysTreeInfo.cxx ${clitkExtractAirwaysTreeInfo_GGO_C})
40 # TARGET_LINK_LIBRARIES(clitkExtractAirwaysTreeInfo clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
41 # SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractAirwaysTreeInfo)
43 WRAP_GGO(clitkExtractBones_GGO_C clitkExtractBones.ggo)
44 ADD_EXECUTABLE(clitkExtractBones clitkExtractBones.cxx ${clitkExtractBones_GGO_C})
45 TARGET_LINK_LIBRARIES(clitkExtractBones clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
46 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractBones)
48 WRAP_GGO(clitkBool_GGO_C clitkBool.ggo)
49 ADD_EXECUTABLE(clitkBool clitkBool.cxx ${clitkBool_GGO_C})
50 TARGET_LINK_LIBRARIES(clitkBool clitkCommon ${ITK_LIBRARIES} clitkSegmentationGgoLib)
51 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkBool)
53 WRAP_GGO(clitkExtractMediastinum_GGO_C clitkExtractMediastinum.ggo)
54 ADD_EXECUTABLE(clitkExtractMediastinum clitkExtractMediastinum.cxx ${clitkExtractMediastinum_GGO_C})
55 TARGET_LINK_LIBRARIES(clitkExtractMediastinum clitkCommon clitkSegmentationGgoLib ${ITK_LIBRARIES})
56 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractMediastinum)
58 WRAP_GGO(clitkExtractLymphStations_GGO_C clitkExtractLymphStations.ggo)
59 ADD_EXECUTABLE(clitkExtractLymphStations clitkExtractLymphStations.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractLymphStations_GGO_C})
60 TARGET_LINK_LIBRARIES(clitkExtractLymphStations clitkSegmentationGgoLib clitkCommon vtkHybrid)
61 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractLymphStations)
63 WRAP_GGO(clitkExtractMediastinalVessels_GGO_C clitkExtractMediastinalVessels.ggo)
64 ADD_EXECUTABLE(clitkExtractMediastinalVessels clitkExtractMediastinalVessels.cxx clitkFilterWithAnatomicalFeatureDatabaseManagement.cxx ${clitkExtractMediastinalVessels_GGO_C})
65 TARGET_LINK_LIBRARIES(clitkExtractMediastinalVessels clitkSegmentationGgoLib clitkCommon vtkHybrid)
66 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkExtractMediastinalVessels)
68 WRAP_GGO(clitkMorphoMath_GGO_C clitkMorphoMath.ggo)
69 ADD_EXECUTABLE(clitkMorphoMath clitkMorphoMath.cxx ${clitkMorphoMath_GGO_C})
70 TARGET_LINK_LIBRARIES(clitkMorphoMath clitkCommon ${ITK_LIBRARIES})
71 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkMorphoMath)
73 WRAP_GGO(clitkMorphoReconstruction_GGO_C clitkMorphoReconstruction.ggo)
74 ADD_EXECUTABLE(clitkMorphoReconstruction clitkMorphoReconstruction.cxx clitkMorphoReconstructionGenericFilter.cxx ${clitkMorphoReconstruction_GGO_C})
75 TARGET_LINK_LIBRARIES(clitkMorphoReconstruction clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES})
76 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkMorphoReconstruction)
78 WRAP_GGO(clitkCalculateDistanceMap_GGO_C clitkCalculateDistanceMap.ggo)
79 ADD_EXECUTABLE(clitkCalculateDistanceMap clitkCalculateDistanceMap.cxx clitkCalculateDistanceMapGenericFilter.cxx ${clitkCalculateDistanceMap_GGO_C})
80 TARGET_LINK_LIBRARIES(clitkCalculateDistanceMap clitkCommon ${ITK_LIBRARIES})
81 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkCalculateDistanceMap)
83 WRAP_GGO(clitkLevelSetSegmentation_GGO_C clitkLevelSetSegmentation.ggo)
84 ADD_EXECUTABLE(clitkLevelSetSegmentation clitkLevelSetSegmentation.cxx clitkLevelSetSegmentationGenericFilter.cxx ${clitkLevelSetSegmentation_GGO_C})
85 TARGET_LINK_LIBRARIES(clitkLevelSetSegmentation clitkCommon ${ITK_LIBRARIES})
86 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkLevelSetSegmentation)
88 WRAP_GGO(clitkAnd_GGO_C clitkAnd.ggo)
89 ADD_EXECUTABLE(clitkAnd clitkAnd.cxx clitkAndGenericFilter.cxx ${clitkAnd_GGO_C})
90 TARGET_LINK_LIBRARIES(clitkAnd clitkCommon ${ITK_LIBRARIES} )
91 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkAnd)
93 WRAP_GGO(clitkRegionGrowing_GGO_C clitkRegionGrowing.ggo)
94 ADD_EXECUTABLE(clitkRegionGrowing clitkRegionGrowing.cxx clitkRegionGrowingGenericFilter.cxx ${clitkRegionGrowing_GGO_C})
95 TARGET_LINK_LIBRARIES(clitkRegionGrowing clitkCommon ${ITK_LIBRARIES})
96 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkRegionGrowing)
98 WRAP_GGO(clitkDecomposeAndReconstruct_GGO_C clitkDecomposeAndReconstruct.ggo)
99 ADD_EXECUTABLE(clitkDecomposeAndReconstruct clitkDecomposeAndReconstruct.cxx clitkDecomposeAndReconstructGenericFilter.cxx ${clitkDecomposeAndReconstruct_GGO_C})
100 TARGET_LINK_LIBRARIES(clitkDecomposeAndReconstruct clitkCommon ${ITK_LIBRARIES})
101 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkDecomposeAndReconstruct)
103 WRAP_GGO(clitkMotionMask_GGO_C clitkMotionMask.ggo)
104 ADD_EXECUTABLE(clitkMotionMask clitkMotionMask.cxx clitkMotionMaskGenericFilter.cxx ${clitkMotionMask_GGO_C})
105 TARGET_LINK_LIBRARIES(clitkMotionMask clitkCommon ${ITK_LIBRARIES})
106 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkMotionMask)
108 WRAP_GGO(clitkFillImageRegion_GGO_C clitkFillImageRegion.ggo)
109 ADD_EXECUTABLE(clitkFillImageRegion clitkFillImageRegion.cxx clitkFillImageRegionGenericFilter.cxx ${clitkFillImageRegion_GGO_C})
110 TARGET_LINK_LIBRARIES(clitkFillImageRegion clitkCommon ${ITK_LIBRARIES})
111 SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkFillImageRegion)
113 # WRAP_GGO(clitkTestFilter_GGO_C clitkTestFilter.ggo)
114 # ADD_EXECUTABLE(clitkTestFilter clitkTestFilter.cxx ${clitkTestFilter_GGO_C})
115 # TARGET_LINK_LIBRARIES(clitkTestFilter clitkSegmentationGgoLib clitkCommon vtkHybrid)
116 # SET(SEGMENTATION_INSTALL ${TOOLS_INSTALL} clitkTestFilter)
118 INSTALL (TARGETS ${SEGMENTATION_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_EXECUTE WORLD_EXECUTE)
120 ENDIF(CLITK_BUILD_SEGMENTATION)
122 # ADD_EXECUTABLE(ScalarImageMarkovRandomField1 ScalarImageMarkovRandomField1.cxx)
123 # TARGET_LINK_LIBRARIES(ScalarImageMarkovRandomField1 clitkCommon ${ITK_LIBRARIES} ITKStatistics)
124 # ADD_EXECUTABLE(ScalarImageKmeansClassifier ScalarImageKmeansClassifier.cxx)
125 # TARGET_LINK_LIBRARIES(ScalarImageKmeansClassifier clitkCommon ${ITK_LIBRARIES} ITKStatistics)