1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://www.centreleonberard.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ===========================================================================**/
18 #ifndef clitkAndGenericFilter_txx
19 #define clitkAndGenericFilter_txx
21 /* =================================================
22 * @file clitkAndGenericFilter.txx
28 ===================================================*/
34 //-------------------------------------------------------------------
35 // Update with the number of dimensions
36 //-------------------------------------------------------------------
37 template<unsigned int Dimension>
39 AndGenericFilter::UpdateWithDim(std::string PixelType)
41 if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
43 if(PixelType == "short"){
44 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
45 UpdateWithDimAndPixelType<Dimension, signed short>();
47 // else if(PixelType == "unsigned_short"){
48 // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
49 // UpdateWithDimAndPixelType<Dimension, unsigned short>();
52 else if (PixelType == "unsigned_char"){
53 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
54 UpdateWithDimAndPixelType<Dimension, unsigned char>();
57 // else if (PixelType == "char"){
58 // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
59 // UpdateWithDimAndPixelType<Dimension, signed char>();
62 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
63 UpdateWithDimAndPixelType<Dimension, float>();
68 //-------------------------------------------------------------------
69 // Update with the number of dimensions and the pixeltype
70 //-------------------------------------------------------------------
71 template <unsigned int Dimension, class PixelType>
73 AndGenericFilter::UpdateWithDimAndPixelType()
77 typedef itk::Image<PixelType, Dimension> InputImageType;
78 typedef itk::Image<int, Dimension> InternalImageType;
79 typedef itk::Image<PixelType, Dimension> OutputImageType;
82 typedef itk::ImageFileReader<InputImageType> InputReaderType;
83 typename InputReaderType::Pointer reader = InputReaderType::New();
84 reader->SetFileName( m_InputFileName);
86 typename InputImageType::Pointer input= reader->GetOutput();
88 // Read the second input
89 typename InputReaderType::Pointer reader2 = InputReaderType::New();
90 reader2->SetFileName( m_ArgsInfo.input2_arg);
92 typename InputImageType::Pointer input2= reader2->GetOutput();
96 typedef itk::CastImageFilter<InputImageType, InternalImageType> InputCastImageFilterType;
97 typename InputCastImageFilterType::Pointer caster= InputCastImageFilterType::New();
98 caster->SetInput(input);
99 typename InputCastImageFilterType::Pointer caster2= InputCastImageFilterType::New();
100 caster->SetInput(input2);
103 typedef itk::AndImageFilter< InternalImageType , InternalImageType , InternalImageType> AndFilterType;
104 typename AndFilterType::Pointer andFilter = AndFilterType::New();
105 andFilter->SetInput1(caster->GetOutput());
106 andFilter->SetInput2(caster2->GetOutput());
107 if (m_Verbose) std::cout<<"Performing a logical AND..."<<std::endl;
110 typedef itk::CastImageFilter<InternalImageType, OutputImageType> OutputCastImageFilterType;
111 typename OutputCastImageFilterType::Pointer caster3= OutputCastImageFilterType::New();
112 caster3->SetInput(andFilter->GetOutput());
113 typename OutputImageType::Pointer output =caster3->GetOutput();
116 typedef itk::ImageFileWriter<OutputImageType> WriterType;
117 typename WriterType::Pointer writer = WriterType::New();
118 writer->SetFileName(m_ArgsInfo.output_arg);
119 writer->SetInput(output);
127 #endif //#define clitkAndGenericFilter_txx