1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
18 #ifndef clitkBinarizeImageGenericFilter_txx
19 #define clitkBinarizeImageGenericFilter_txx
21 /* =================================================
22 * @file clitkBinarizeImageGenericFilter.txx
23 * @author Jef Vandemeulebroucke <jef@creatis.insa-lyon.fr>
28 ===================================================*/
34 //-------------------------------------------------------------------
35 // Update with the number of dimensions
36 //-------------------------------------------------------------------
37 template<unsigned int Dimension>
39 BinarizeImageGenericFilter::UpdateWithDim(std::string PixelType)
41 if (m_Verbose) std::cout << "Image was detected to be "<<Dimension<<"D and "<< PixelType<<"..."<<std::endl;
43 if(PixelType == "short"){
44 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed short..." << std::endl;
45 UpdateWithDimAndPixelType<Dimension, signed short>();
47 // else if(PixelType == "unsigned_short"){
48 // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_short..." << std::endl;
49 // UpdateWithDimAndPixelType<Dimension, unsigned short>();
52 else if (PixelType == "unsigned_char"){
53 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and unsigned_char..." << std::endl;
54 UpdateWithDimAndPixelType<Dimension, unsigned char>();
57 // else if (PixelType == "char"){
58 // if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and signed_char..." << std::endl;
59 // UpdateWithDimAndPixelType<Dimension, signed char>();
62 if (m_Verbose) std::cout << "Launching filter in "<< Dimension <<"D and float..." << std::endl;
63 UpdateWithDimAndPixelType<Dimension, float>();
68 //-------------------------------------------------------------------
69 // Update with the number of dimensions and the pixeltype
70 //-------------------------------------------------------------------
71 template <unsigned int Dimension, class PixelType>
73 BinarizeImageGenericFilter::UpdateWithDimAndPixelType()
77 typedef itk::Image<PixelType, Dimension> InputImageType;
78 typedef itk::Image<PixelType, Dimension> OutputImageType;
81 typedef itk::ImageFileReader<InputImageType> InputReaderType;
82 typename InputReaderType::Pointer reader = InputReaderType::New();
83 reader->SetFileName( m_InputFileName);
84 typename InputImageType::Pointer input= reader->GetOutput();
87 typedef itk::BinaryThresholdImageFilter<InputImageType, OutputImageType> BinaryThresholdImageFilterType;
88 typename BinaryThresholdImageFilterType::Pointer thresholdFilter=BinaryThresholdImageFilterType::New();
89 thresholdFilter->SetInput(input);
90 if(m_ArgsInfo.lower_given) thresholdFilter->SetLowerThreshold(static_cast<PixelType>(m_ArgsInfo.lower_arg));
91 if(m_ArgsInfo.upper_given) thresholdFilter->SetUpperThreshold(static_cast<PixelType>(m_ArgsInfo.upper_arg));
92 thresholdFilter->SetInsideValue(m_ArgsInfo.inside_arg);
93 thresholdFilter->SetOutsideValue(m_ArgsInfo.outside_arg);
94 typename OutputImageType::Pointer output=thresholdFilter->GetOutput();
97 typedef itk::ImageFileWriter<OutputImageType> WriterType;
98 typename WriterType::Pointer writer = WriterType::New();
99 writer->SetFileName(m_ArgsInfo.output_arg);
100 writer->SetInput(output);
108 #endif //#define clitkBinarizeImageGenericFilter_txx