1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #ifndef CLITKEXTRACTBONESSGENERICFILTER_TXX
20 #define CLITKEXTRACTBONESSGENERICFILTER_TXX
22 #include "clitkImageCommon.h"
24 //--------------------------------------------------------------------
25 template<class ArgsInfoType>
26 clitk::ExtractBonesGenericFilter<ArgsInfoType>::ExtractBonesGenericFilter():
27 ImageToImageGenericFilter<Self>("ExtractBones")
30 cmdline_parser_clitkExtractBones_init(&mArgsInfo);
31 InitializeImageType<3>();
33 //--------------------------------------------------------------------
36 //--------------------------------------------------------------------
37 template<class ArgsInfoType>
38 template<unsigned int Dim>
39 void clitk::ExtractBonesGenericFilter<ArgsInfoType>::InitializeImageType()
41 ADD_IMAGE_TYPE(Dim, short);
42 // ADD_IMAGE_TYPE(Dim, int);
43 // ADD_IMAGE_TYPE(Dim, float);
45 //--------------------------------------------------------------------
48 //--------------------------------------------------------------------
49 template<class ArgsInfoType>
50 void clitk::ExtractBonesGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
53 SetIOVerbose(mArgsInfo.verbose_flag);
54 if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
55 if (mArgsInfo.input_given) AddInputFilename(mArgsInfo.input_arg);
56 if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
58 //--------------------------------------------------------------------
61 //--------------------------------------------------------------------
62 // Update with the number of dimensions and the pixeltype
63 //--------------------------------------------------------------------
64 template<class ArgsInfoType>
65 template<class ImageType>
66 void clitk::ExtractBonesGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
68 // Mask & output image type
69 typedef itk::Image<uchar, ImageType::ImageDimension> OutputImageType;
72 typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
75 typedef clitk::ExtractBonesFilter<ImageType, OutputImageType> FilterType;
76 typename FilterType::Pointer filter = FilterType::New();
79 filter->SetArgsInfo(mArgsInfo);
80 filter->SetInput(input);
86 if (filter->HasError()) {
87 SetLastError(filter->GetLastError());
93 typename OutputImageType::Pointer output = filter->GetOutput();
94 this->template SetNextOutput<OutputImageType>(output);
96 //--------------------------------------------------------------------
98 #endif //#define CLITKEXTRACTBONESSGENERICFILTER_TXX