1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #ifndef CLITKEXTRACTLUNGSGENERICFILTER_TXX
20 #define CLITKEXTRACTLUNGSGENERICFILTER_TXX
22 #include "clitkImageCommon.h"
24 //--------------------------------------------------------------------
25 template<class ArgsInfoType>
26 clitk::ExtractLungGenericFilter<ArgsInfoType>::ExtractLungGenericFilter():
27 ImageToImageGenericFilter<Self>("ExtractLung")
29 this->SetFilterBase(NULL);
31 cmdline_parser_clitkExtractLung_init(&mArgsInfo);
32 InitializeImageType<3>();
34 //--------------------------------------------------------------------
37 //--------------------------------------------------------------------
38 template<class ArgsInfoType>
39 template<unsigned int Dim>
40 void clitk::ExtractLungGenericFilter<ArgsInfoType>::InitializeImageType()
42 ADD_IMAGE_TYPE(Dim, short);
43 // ADD_IMAGE_TYPE(Dim, int);
44 // ADD_IMAGE_TYPE(Dim, float);
46 //--------------------------------------------------------------------
49 //--------------------------------------------------------------------
50 template<class ArgsInfoType>
51 void clitk::ExtractLungGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
54 SetIOVerbose(mArgsInfo.verbose_flag);
55 if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
56 if (mArgsInfo.input_given) AddInputFilename(mArgsInfo.input_arg);
57 if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
58 if (mArgsInfo.outputTrachea_given) AddOutputFilename(mArgsInfo.outputTrachea_arg);
60 //--------------------------------------------------------------------
63 //--------------------------------------------------------------------
64 // Update with the number of dimensions and the pixeltype
65 //--------------------------------------------------------------------
66 template<class ArgsInfoType>
67 template<class ImageType>
68 void clitk::ExtractLungGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
70 // Mask & output image type
71 typedef itk::Image<uchar, ImageType::ImageDimension> MaskImageType;
74 typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
77 typedef clitk::ExtractLungFilter<ImageType> FilterType;
78 typename FilterType::Pointer filter = FilterType::New();
80 // Set the filter (needed for example for threaded monitoring)
81 this->SetFilterBase(filter);
84 filter->SetArgsInfo(mArgsInfo);
85 filter->SetInput(input);
91 typename MaskImageType::Pointer output = filter->GetOutput();
92 this->template SetNextOutput<MaskImageType>(output);
93 this->template SetNextOutput<typename FilterType::MaskImageType>(filter->GetTracheaImage());
95 //--------------------------------------------------------------------
97 #endif //#define CLITKEXTRACTLUNGSGENERICFILTER_TXX