1 #File clitkExtractLymphStations.ggo
2 package "clitkExtractLymphStations"
4 purpose "Extract LymphStations with help of TODO"
6 option "config" - "Config file" string no
7 option "imagetypes" - "Display allowed image types" flag off
8 option "verbose" v "Verbose" flag off
9 option "verboseStep" - "Verbose each step" flag off
10 option "writeStep" w "Write image at each step" flag off
11 option "verboseOption" - "Display options values" flag off
12 option "verboseWarningOff" - "Do not display warning" flag off
13 option "verboseMemory" - "Display memory usage" flag off
17 option "afdb" a "Input Anatomical Feature DB" string no
18 option "input" i "Input filename" string no
19 option "output" o "Output lungs mask filename" string no
20 option "station" - "Force to compute station even if already exist in the DB" string no multiple
21 option "nosupport" - "Do not recompute the station supports if already available" flag off
24 section "Options for Station 3A"
25 option "S3A_ft_SVC" - "Fuzzy Threshold for NotPost to SVC" double default="0.5" no
26 option "S3A_ft_Bones" - "Fuzzy Threshold for Post to Bones" double default="0.5" no
27 option "S3A_t_Bones" - "Binary HU Threshold for bones" double default="250" no
28 option "S3A_ft_Aorta" - "Fuzzy Threshold for NotPost to Aorta" double default="0.5" no
29 option "S3A_ft_SubclavianArtery" - "Fuzzy Threshold for Ant to SubclavianArtery" double default="0.2" no
32 section "Options for Station 8"
33 option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
34 option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
35 option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no
37 section "Options for Station 7"
38 option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no
39 option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no
40 option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no
41 option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no
42 option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no
43 option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no
44 option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off
46 section "Options for Station 2RL"
47 option "S2RL_ft_CommonCarotidArtery" - "Threshold for NotAntTo to CommonCarotidArtery" double default="0.7" no
48 option "S2RL_ft_BrachioCephalicTrunk" - "Threshold for NotAntTo to BrachioCephalicTrunk" double default="0.7" no
49 option "S2RL_ft_BrachioCephalicVein" - "Threshold for NotAntTo to BrachioCephalicVein" double default="0.3" no
50 option "S2RL_ft_Aorta" - "Threshold for RightTo to Aorta" double default="0.7" no
51 option "S2RL_ft_SubclavianArteryRight" - "Threshold for NotLeft to SubclavianArteryRight" double default="0.5" no
52 option "S2RL_ft_SubclavianArteryLeft" - "Threshold for NotRight to SubclavianArteryLeft" double default="0.8" no