1 #File clitkExtractLymphStations.ggo
2 package "clitkExtractLymphStations"
4 purpose "Extract LymphStations with help of TODO"
6 option "config" - "Config file" string no
7 option "imagetypes" - "Display allowed image types" flag off
8 option "verbose" v "Verbose" flag off
9 option "verboseStep" - "Verbose each step" flag off
10 option "writeStep" w "Write image at each step" flag off
11 option "verboseOption" - "Display options values" flag off
12 option "verboseWarningOff" - "Do not display warning" flag off
13 option "verboseMemory" - "Display memory usage" flag off
17 option "afdb" a "Input Anatomical Feature DB" string no
18 option "afdb_path" p "Input path for image in AFDB" string default="./" no
19 option "input" i "Input filename" string no
20 option "support_limits" - "Filename to read the support limits" string yes
21 option "check_support_limits" - "Display stat on the support limits" flag off
22 option "output" o "Output lungs mask filename" string no
24 section "Options for all stations"
25 option "force_support" - "Force to compute all supports even if already available" flag off
26 option "station" - "Force to compute this station even if already exist in the DB" string no multiple
27 option "relpos" - "List of filenames for relativeposition operations" string no multiple
31 # section "Options for Station 3A"
32 # section "Options for Station 2RL"
33 # section "Options for Station 1RL"
35 section "Options for Station 8"
36 option "S8_esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
37 option "S8_esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
38 option "S8_ft_Esophagus" - "Fuzzy Threshold for 'Post' to dilated Esophagus" double default="0.5" no
40 section "Options for Station 7"
41 option "S7_ft_Bronchi" - "Fuzzy Threshold for Left/Right bronchi" double default="0.1" no
42 option "S7_ft_LeftSuperiorPulmonaryVein" - "Fuzzy Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no
43 option "S7_ft_RightSuperiorPulmonaryVein" - "Fuzzy Threshold for RightSuperiorPulmonaryVein" double default="0.2" no
44 option "S7_ft_RightPulmonaryArtery" - "Fuzzy Threshold for RightPulmonaryArtery" double default="0.3" no
45 option "S7_ft_LeftPulmonaryArtery" - "Fuzzy Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no
46 option "S7_ft_SVC" - "Fuzzy Threshold for SVC" double default="0.2" no
47 option "S7_UseMostInferiorPartOnly" - "Inferior separation with S8." flag off