1 #File clitkExtractLymphStations.ggo
2 package "clitkExtractLymphStations"
4 purpose "Extract LymphStations with help of TODO"
6 option "config" - "Config file" string no
7 option "imagetypes" - "Display allowed image types" flag off
8 option "verbose" v "Verbose" flag off
9 option "verboseStep" - "Verbose each step" flag off
10 option "writeStep" w "Write image at each step" flag off
11 option "verboseOption" - "Display options values" flag off
12 option "verboseWarningOff" - "Do not display warning" flag off
13 option "verboseMemory" - "Display memory usage" flag off
17 option "afdb" a "Input Anatomical Feature DB" string no
18 option "input" i "Input filename" string no
19 option "output" o "Output lungs mask filename" string no
20 option "station" - "Force to compute station even if already exist in the DB" string no multiple
22 section "Options for Station 8"
23 option "maxAntSpine" - "Distance max to anterior part of the spine in mm" double no default="10"
24 option "esophagusDilatationForAnt" - "Dilatation of esophagus, in mm, for 'anterior' limits (default=15,2,1)" double no multiple
25 option "esophagusDilatationForRight" - "Dilatation of esophagus, in mm, for 'right' limits (default=5,10,1)" double no multiple
26 option "tS8_Esophagus" - "Threshold for 'Post' to dilated Esophagus" double default="0.5" no
27 option "injectedThresholdForS8" - "Threshold injected areas in the ct" double default="150" no
29 section "Options for Station 7"
30 option "tS7_Bronchi" - "Threshold for Left/Right bronchi" double default="0.1" no
31 option "tS7_LeftSuperiorPulmonaryVein" - "Threshold for LeftSuperiorPulmonaryVein" double default="0.3" no
32 option "tS7_RightSuperiorPulmonaryVein" - "Threshold for RightSuperiorPulmonaryVein" double default="0.2" no
33 option "tS7_RightPulmonaryArtery" - "Threshold for RightPulmonaryArtery" double default="0.3" no
34 option "tS7_LeftPulmonaryArtery" - "Threshold for LeftPulmonaryArtery (NOT USEFUL YET)" double default="0.5" no
35 option "tS7_SVC" - "Threshold for SVC" double default="0.2" no
37 section "Options for Station 3A"
38 option "tS3A_Sternum" - "Threshold for Post to Sternum" double default="0.5" no
39 option "tS3A_SubclavianArtery" - "Threshold for Ant to SubclavianArtery" double default="0.2" no
41 section "Options for Station 2RL"
42 option "tS2RL_CommonCarotidArtery" - "Threshold for NotAntTo to CommonCarotidArtery" double default="0.7" no
43 option "tS2RL_BrachioCephalicTrunk" - "Threshold for NotAntTo to BrachioCephalicTrunk" double default="0.7" no
44 option "tS2RL_BrachioCephalicVein" - "Threshold for NotAntTo to BrachioCephalicVein" double default="0.3" no
45 option "tS2RL_Aorta" - "Threshold for RightTo to Aorta" double default="0.7" no
46 option "tS2RL_SubclavianArteryRight" - "Threshold for NotLeft to SubclavianArteryRight" double default="0.5" no
47 option "tS2RL_SubclavianArteryLeft" - "Threshold for NotRight to SubclavianArteryLeft" double default="0.8" no