segmentation/clitkExtractLymphStationsFilter.old.h

   1 /*=========================================================================
   2   Program:   vv                     http://www.creatis.insa-lyon.fr/rio/vv
   3
   4   Authors belong to:
   5   - University of LYON              http://www.universite-lyon.fr/
   6   - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
   7   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
   8
   9   This software is distributed WITHOUT ANY WARRANTY; without even
  10   the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  11   PURPOSE.  See the copyright notices for more information.
  12
  13   It is distributed under dual licence
  14
  15   - BSD        See included LICENSE.txt file
  16   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
  17   ======================================================================-====*/
  18
  19 #ifndef CLITKEXTRACTLYMPHSTATIONSFILTER_H
  20 #define CLITKEXTRACTLYMPHSTATIONSFILTER_H
  21
  22 // clitk
  23 #include "clitkFilterBase.h"
  24 #include "clitkFilterWithAnatomicalFeatureDatabaseManagement.h"
  25
  26 namespace clitk {
  27
  28   //--------------------------------------------------------------------
  29   /*
  30     Try to extract the LymphStations part of a thorax CT.
  31     Inputs :
  32     - Patient label image
  33     - Lungs label image
  34     - Bones label image
  35   */
  36   //--------------------------------------------------------------------
  37
  38   template <class TImageType>
  39   class ITK_EXPORT ExtractLymphStationsFilter:
  40     public virtual clitk::FilterBase,
  41     public clitk::FilterWithAnatomicalFeatureDatabaseManagement,
  42     public itk::ImageToImageFilter<TImageType, itk::Image<uchar, 3> >
  43   {
  44
  45   public:
  46     /** Standard class typedefs. */
  47     typedef itk::ImageToImageFilter<TImageType, itk::Image<uchar, 3> > Superclass;
  48     typedef ExtractLymphStationsFilter          Self;
  49     typedef itk::SmartPointer<Self>             Pointer;
  50     typedef itk::SmartPointer<const Self>       ConstPointer;
  51
  52     /** Method for creation through the object factory. */
  53     itkNewMacro(Self);
  54
  55     /** Run-time type information (and related methods). */
  56     itkTypeMacro(ExtractLymphStationsFilter, InPlaceImageFilter);
  57
  58     /** Some convenient typedefs. */
  59     typedef TImageType                       ImageType;
  60     typedef typename ImageType::ConstPointer ImageConstPointer;
  61     typedef typename ImageType::Pointer      ImagePointer;
  62     typedef typename ImageType::RegionType   ImageRegionType;
  63     typedef typename ImageType::PixelType    ImagePixelType;
  64     typedef typename ImageType::SizeType     ImageSizeType;
  65     typedef typename ImageType::IndexType    ImageIndexType;
  66     typedef typename ImageType::PointType    ImagePointType;
  67
  68     typedef uchar MaskImagePixelType;
  69     typedef itk::Image<MaskImagePixelType, 3> MaskImageType;
  70     typedef typename MaskImageType::Pointer   MaskImagePointer;
  71
  72     /** Connect inputs */
  73     //    void SetInput(const TImageType * image);
  74
  75     /** ImageDimension constants */
  76     itkStaticConstMacro(ImageDimension, unsigned int, TImageType::ImageDimension);
  77     FILTERBASE_INIT;
  78
  79     itkGetConstMacro(BackgroundValue, ImagePixelType);
  80     itkGetConstMacro(ForegroundValue, ImagePixelType);
  81     itkSetMacro(BackgroundValue, ImagePixelType);
  82     itkSetMacro(ForegroundValue, ImagePixelType);
  83
  84     itkSetMacro(FuzzyThreshold, double);
  85     itkGetConstMacro(FuzzyThreshold, double);
  86
  87   protected:
  88     ExtractLymphStationsFilter();
  89     virtual ~ExtractLymphStationsFilter() {}
  90
  91     virtual void GenerateOutputInformation();
  92     virtual void GenerateInputRequestedRegion();
  93     virtual void GenerateData();
  94
  95     MaskImagePointer m_mediastinum;
  96     MaskImagePointer m_trachea;
  97     MaskImagePointer m_working_mediastinum;
  98     MaskImagePointer m_working_trachea;
  99     MaskImagePointer m_output;
 100
 101     ImagePixelType m_BackgroundValue;
 102     ImagePixelType m_ForegroundValue;
 103     double m_CarinaZPositionInMM;
 104     bool   m_CarinaZPositionInMMIsSet;
 105     double m_MiddleLobeBronchusZPositionInMM;
 106
 107     double m_IntermediateSpacing;
 108     double m_FuzzyThreshold;
 109
 110   private:
 111     ExtractLymphStationsFilter(const Self&); //purposely not implemented
 112     void operator=(const Self&); //purposely not implemented
 113
 114   }; // end class
 115   //--------------------------------------------------------------------
 116
 117 } // end namespace clitk
 118 //--------------------------------------------------------------------
 119
 120 #ifndef ITK_MANUAL_INSTANTIATION
 121 #include "clitkExtractLymphStationsFilter.txx"
 122 #endif
 123
 124 #endif