1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #ifndef CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX
20 #define CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX
22 #include "clitkImageCommon.h"
24 //--------------------------------------------------------------------
25 template<class ArgsInfoType>
26 clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::ExtractLymphStationsGenericFilter():
27 ImageToImageGenericFilter<Self>("ExtractLymphStations")
30 cmdline_parser_clitkExtractLymphStations_init(&mArgsInfo);
31 InitializeImageType<3>(); // Only for 3D images
33 //--------------------------------------------------------------------
36 //--------------------------------------------------------------------
37 template<class ArgsInfoType>
38 template<unsigned int Dim>
39 void clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::InitializeImageType()
41 ADD_IMAGE_TYPE(Dim, short); // Can add float later
43 //--------------------------------------------------------------------
46 //--------------------------------------------------------------------
47 template<class ArgsInfoType>
48 void clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
51 SetIOVerbose(mArgsInfo.verbose_flag);
52 if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
53 if (mArgsInfo.input_given) AddInputFilename(mArgsInfo.input_arg);
54 if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
56 //--------------------------------------------------------------------
59 //--------------------------------------------------------------------
60 template<class ArgsInfoType>
61 template<class FilterType>
63 clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::
64 SetOptionsFromArgsInfoToFilter(FilterType * f)
66 f->SetVerboseOption(mArgsInfo.verbose_flag);
67 f->SetVerboseStep(mArgsInfo.verboseStep_flag);
68 f->SetWriteStep(mArgsInfo.writeStep_flag);
69 f->SetAFDBFilename(mArgsInfo.afdb_arg);
71 //--------------------------------------------------------------------
74 //--------------------------------------------------------------------
75 // Update with the number of dimensions and the pixeltype
76 //--------------------------------------------------------------------
77 template<class ArgsInfoType>
78 template<class ImageType>
79 void clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
82 typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
85 typedef clitk::ExtractLymphStationsFilter<ImageType> FilterType;
86 typename FilterType::Pointer filter = FilterType::New();
89 filter->SetInput(input);
90 SetOptionsFromArgsInfoToFilter<FilterType>(filter);
96 typedef uchar MaskImagePixelType;
97 typedef itk::Image<MaskImagePixelType, 3> OutputImageType;
98 typename OutputImageType::Pointer output = filter->GetOutput();
99 this->template SetNextOutput<OutputImageType>(output);
101 //--------------------------------------------------------------------
103 #endif //#define CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX