1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #ifndef CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX
20 #define CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX
22 #include "clitkImageCommon.h"
24 //--------------------------------------------------------------------
25 template<class ArgsInfoType>
26 clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::ExtractLymphStationsGenericFilter():
27 ImageToImageGenericFilter<Self>("ExtractLymphStations")
30 cmdline_parser_clitkExtractLymphStations_init(&mArgsInfo);
31 InitializeImageType<3>();
33 //--------------------------------------------------------------------
36 //--------------------------------------------------------------------
37 template<class ArgsInfoType>
38 template<unsigned int Dim>
39 void clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::InitializeImageType()
41 ADD_IMAGE_TYPE(Dim, uchar);
42 // ADD_IMAGE_TYPE(Dim, short);
43 // ADD_IMAGE_TYPE(Dim, int);
44 // ADD_IMAGE_TYPE(Dim, float);
46 //--------------------------------------------------------------------
49 //--------------------------------------------------------------------
50 template<class ArgsInfoType>
51 void clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
54 SetIOVerbose(mArgsInfo.verbose_flag);
55 if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
56 if (mArgsInfo.mediastinum_given) AddInputFilename(mArgsInfo.mediastinum_arg);
57 if (mArgsInfo.trachea_given) AddInputFilename(mArgsInfo.trachea_arg);
58 if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
60 //--------------------------------------------------------------------
63 //--------------------------------------------------------------------
64 // Update with the number of dimensions and the pixeltype
65 //--------------------------------------------------------------------
66 template<class ArgsInfoType>
67 template<class ImageType>
68 void clitk::ExtractLymphStationsGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
71 typename ImageType::Pointer mediastinum = this->template GetInput<ImageType>(0);
72 typename ImageType::Pointer trachea = this->template GetInput<ImageType>(1);
75 typedef clitk::ExtractLymphStationsFilter<ImageType> FilterType;
76 typename FilterType::Pointer filter = FilterType::New();
79 filter->SetInputMediastinumLabelImage(mediastinum, 0); // change 0 with BG
80 filter->SetInputTracheaLabelImage(trachea, 0); // change 0 with BG
81 filter->SetArgsInfo(mArgsInfo);
87 // catch(std::runtime_error e) {
90 // if (filter->HasError()) {
91 // SetLastError(filter->GetLastError());
97 typename ImageType::Pointer output = filter->GetOutput();
98 this->template SetNextOutput<ImageType>(output);
100 //--------------------------------------------------------------------
102 #endif //#define CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX