1 #File clitkExtractMediastinum.ggo
2 package "clitkExtractMediastinum"
4 purpose "Extract mediastinum with help of patient/lungs/bones mask"
6 option "config" - "Config file" string no
7 option "imagetypes" - "Display allowed image types" flag off
8 option "verbose" v "Verbose" flag off
9 option "verboseStep" - "Verbose each step" flag off
10 option "writeStep" w "Write image at each step" flag off
11 option "verboseOption" - "Display options values" flag off
12 option "verboseWarningOff" - "Do not display warning" flag off
13 option "verboseMemory" - "Display memory usage" flag off
17 option "input" i "Input CT filename" string yes
18 option "afdb" a "Input Anatomical Feature DB" string no
19 option "useBones" - "If set : do use bones mask (when image is not injected)" flag off
21 option "output" o "Output lungs mask filename" string yes
23 section "Step 1 : Left/Right limits with lungs"
24 option "spacing" - "Intermediate resampling spacing" double no default="6"
25 option "fuzzy1" - "Fuzzy relative position threshold" double no default="0.5"
27 section "Step 2 : Ant/Post limits with bones"
28 option "fuzzy2" - "Fuzzy relative position threshold" double no default="0.6"
29 option "antSpine" - "Distance max to anterior part of the spine in mm" double no default="10"
31 section "Step 3 : Inf limits with Lung"
32 option "fuzzy3" - "Fuzzy relative position threshold" double no default="0.05"
34 section "Step x : threshold for removing bones and injected parts"
35 option "upper" - "Upper threshold" double no default="150"
36 option "lower" - "Lower threshold" double no default="-200"