1 /*=========================================================================
2 Program: vv http://www.creatis.insa-lyon.fr/rio/vv
5 - University of LYON http://www.universite-lyon.fr/
6 - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
7 - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
9 This software is distributed WITHOUT ANY WARRANTY; without even
10 the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
11 PURPOSE. See the copyright notices for more information.
13 It is distributed under dual licence
15 - BSD See included LICENSE.txt file
16 - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
17 ======================================================================-====*/
19 #ifndef CLITKEXTRACTMEDIASTINUMSGENERICFILTER_TXX
20 #define CLITKEXTRACTMEDIASTINUMSGENERICFILTER_TXX
22 #include "clitkImageCommon.h"
24 //--------------------------------------------------------------------
25 template<class ArgsInfoType>
26 clitk::ExtractMediastinumGenericFilter<ArgsInfoType>::ExtractMediastinumGenericFilter():
27 ImageToImageGenericFilter<Self>("ExtractMediastinum")
30 cmdline_parser_clitkExtractMediastinum_init(&mArgsInfo);
31 InitializeImageType<3>();
33 //--------------------------------------------------------------------
36 //--------------------------------------------------------------------
37 template<class ArgsInfoType>
38 template<unsigned int Dim>
39 void clitk::ExtractMediastinumGenericFilter<ArgsInfoType>::InitializeImageType()
41 ADD_IMAGE_TYPE(Dim, short);
42 // ADD_IMAGE_TYPE(Dim, short);
43 // ADD_IMAGE_TYPE(Dim, int);
44 // ADD_IMAGE_TYPE(Dim, float);
46 //--------------------------------------------------------------------
49 //--------------------------------------------------------------------
50 template<class ArgsInfoType>
51 void clitk::ExtractMediastinumGenericFilter<ArgsInfoType>::SetArgsInfo(const ArgsInfoType & a)
54 SetIOVerbose(mArgsInfo.verbose_flag);
55 if (mArgsInfo.imagetypes_flag) this->PrintAvailableImageTypes();
56 if (mArgsInfo.input_given) AddInputFilename(mArgsInfo.input_arg);
57 //if (mArgsInfo.patient_given) AddInputFilename(mArgsInfo.patient_arg);
58 //if (mArgsInfo.lung_given) AddInputFilename(mArgsInfo.lung_arg);
59 //if (mArgsInfo.bones_given) AddInputFilename(mArgsInfo.bones_arg);
60 //if (mArgsInfo.trachea_given) AddInputFilename(mArgsInfo.trachea_arg);
61 if (mArgsInfo.output_given) AddOutputFilename(mArgsInfo.output_arg);
63 //--------------------------------------------------------------------
66 //--------------------------------------------------------------------
67 // Update with the number of dimensions and the pixeltype
68 //--------------------------------------------------------------------
69 template<class ArgsInfoType>
70 template<class ImageType>
71 void clitk::ExtractMediastinumGenericFilter<ArgsInfoType>::UpdateWithInputImageType()
74 typename ImageType::Pointer input = this->template GetInput<ImageType>(0);
75 // typename ImageType::Pointer patient = this->template GetInput<ImageType>(0);
76 // typename ImageType::Pointer lung = this->template GetInput<ImageType>(1);
77 // typename ImageType::Pointer bones = this->template GetInput<ImageType>(2);
78 // typename ImageType::Pointer trachea = this->template GetInput<ImageType>(3);
81 typedef clitk::ExtractMediastinumFilter<ImageType> FilterType;
82 typename FilterType::Pointer filter = FilterType::New();
85 filter->SetInput(input);
86 // filter->SetInputPatientLabelImage(patient, mArgsInfo.patientBG_arg);
87 // filter->SetInputLungLabelImage(lung, mArgsInfo.lungBG_arg, mArgsInfo.lungRight_arg, mArgsInfo.lungLeft_arg);
88 // filter->SetInputBonesLabelImage(bones, mArgsInfo.bonesBG_arg);
89 filter->SetOutputMediastinumFilename(mArgsInfo.output_arg);
90 filter->SetArgsInfo(mArgsInfo);
96 typename FilterType::MaskImageType::Pointer output = filter->GetOutput();
97 this->template SetNextOutput<typename FilterType::MaskImageType>(output);
99 //--------------------------------------------------------------------
101 #endif //#define CLITKEXTRACTMEDIASTINUMSGENERICFILTER_TXX